Wall clock time and date at job start Sun Mar 29 2020 21:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00145 * 2 1 4 4 C 1.38532 * 119.99603 * 179.97438 * 2 1 3 5 5 C 1.39679 * 120.48720 * 4.99990 * 4 2 1 6 6 C 1.38093 * 118.49077 * 179.70011 * 5 4 2 7 7 N 1.32513 * 119.28969 * 0.27694 * 6 5 4 8 8 C 1.32475 * 120.93520 * 0.02562 * 7 6 5 9 9 N 1.38397 * 119.17944 * 179.97438 * 8 7 6 10 10 C 1.46503 * 119.99678 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46707 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47200 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99436 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00405 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99622 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00211 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47012 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47276 * 119.99890 * 16 14 12 19 19 H 1.48503 * 109.46890 * 240.00153 * 16 14 12 20 20 N 1.32464 * 121.64270 * 359.97438 * 8 7 6 21 21 H 1.08998 * 109.47025 * 270.00446 * 1 2 3 22 22 H 1.08999 * 109.46971 * 30.00203 * 1 2 3 23 23 H 1.08990 * 109.47115 * 150.00453 * 1 2 3 24 24 H 1.09008 * 109.47079 * 270.00056 * 3 2 1 25 25 H 1.09000 * 109.47588 * 29.99887 * 3 2 1 26 26 H 1.08999 * 109.47683 * 150.00032 * 3 2 1 27 27 H 1.08002 * 120.75848 * 359.97438 * 5 4 2 28 28 H 1.07998 * 120.35376 * 180.25515 * 6 5 4 29 29 H 0.97001 * 119.99796 * 179.97438 * 9 8 7 30 30 H 1.08994 * 109.47481 * 299.99557 * 10 9 8 31 31 H 1.09000 * 109.47462 * 59.99999 * 10 9 8 32 32 H 1.08996 * 109.47691 * 300.00133 * 11 10 9 33 33 H 1.09002 * 109.47264 * 60.00150 * 11 10 9 34 34 H 0.97005 * 119.99855 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1576 -1.1998 0.0005 5 6 1.4734 -2.4130 -0.1038 6 6 2.2053 -3.5840 -0.1054 7 7 3.5251 -3.5237 -0.0031 8 6 4.1476 -2.3590 0.1007 9 7 5.5274 -2.3384 0.2062 10 6 6.2812 -3.5946 0.2015 11 6 7.7758 -3.2929 0.3288 12 6 8.5512 -4.5851 0.3246 13 1 8.0301 -5.5273 0.2392 14 6 9.9258 -4.5647 0.4298 15 7 10.5602 -3.4174 0.5342 16 14 10.8870 -6.1664 0.4239 17 1 9.9458 -7.3080 0.2971 18 1 11.8311 -6.1729 -0.7223 19 1 11.6481 -6.2915 1.6929 20 7 3.4824 -1.2135 0.1061 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8899 -0.5137 24 1 2.3792 1.5833 -1.0277 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1384 0.5138 27 1 0.3967 -2.4347 -0.1859 28 1 1.7074 -4.5387 -0.1888 29 1 5.9954 -1.4921 0.2824 30 1 5.9623 -4.2129 1.0405 31 1 6.0964 -4.1258 -0.7322 32 1 8.0946 -2.6748 -0.5105 33 1 7.9610 -2.7615 1.2623 34 1 11.5273 -3.4030 0.6086 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308933982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:05 Heat of formation + Delta-G solvation = 41.356975 kcal Electronic energy + Delta-G solvation = -15908.596806 eV Core-core repulsion = 13262.084629 eV Total energy + Delta-G solvation = -2646.512177 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72753 -38.39057 -36.94984 -35.04789 -33.90851 -32.22679 -30.52842 -28.88623 -26.96492 -26.35003 -24.11730 -23.20559 -22.02469 -19.15724 -18.58221 -18.22378 -16.94874 -16.60352 -16.43176 -15.89990 -15.81301 -15.67501 -15.16150 -14.82142 -14.46608 -14.21050 -13.40331 -13.20682 -13.06520 -13.01817 -12.91003 -12.46453 -12.45956 -11.91356 -11.58465 -11.54035 -11.33439 -11.29878 -10.58216 -9.94269 -9.27658 -8.64832 -8.22787 -6.33783 0.47513 0.63634 1.42820 1.42952 1.57068 1.77371 2.28631 2.45853 3.11966 3.14836 3.55747 3.94030 4.04755 4.39310 4.41639 4.49768 4.55136 4.57306 4.59150 4.79920 4.80903 4.89785 4.96602 4.97399 5.29509 5.45822 5.59461 5.64911 5.78487 6.10142 6.17191 6.31520 6.43176 6.77483 6.80961 7.35644 7.63522 8.89973 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.054835 B = 0.004220 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.495696 B = 6633.714302 C = 7112.000704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.611 5.611 3 C 0.095 3.905 4 C 0.449 3.551 5 C -0.348 4.348 6 C 0.201 3.799 7 N -0.633 5.633 8 C 0.584 3.416 9 N -0.698 5.698 10 C 0.170 3.830 11 C 0.020 3.980 12 C -0.541 4.541 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.970 3.030 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.277 1.277 20 N -0.650 5.650 21 H 0.063 0.937 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.172 0.828 28 H 0.196 0.804 29 H 0.409 0.591 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.317 6.201 -1.403 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C -0.048 4.048 4 C 0.204 3.796 5 C -0.378 4.378 6 C 0.039 3.961 7 N -0.361 5.361 8 C 0.226 3.774 9 N -0.334 5.334 10 C 0.046 3.954 11 C -0.017 4.017 12 C -0.580 4.580 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.795 3.205 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.203 1.203 20 N -0.385 5.385 21 H 0.082 0.918 22 H 0.112 0.888 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.189 0.811 28 H 0.212 0.788 29 H 0.245 0.755 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.196 6.276 -1.311 22.144 hybrid contribution 0.347 -0.058 0.019 0.353 sum -20.848 6.217 -1.292 21.794 Atomic orbital electron populations 1.21999 0.75652 1.04782 1.02789 1.46505 1.06785 1.02389 1.76797 1.21648 0.97430 0.84105 1.01600 1.18595 0.87049 0.87914 0.86020 1.22090 1.03286 0.91629 1.20833 1.23226 0.87299 0.99788 0.85802 1.68032 1.12901 1.27206 1.28006 1.19146 0.86871 0.84452 0.86932 1.44486 1.01026 1.10341 1.77506 1.21101 0.90697 0.83654 0.99953 1.19161 0.89988 0.96820 0.95761 1.21484 0.92333 0.93397 1.50748 0.91732 1.25960 0.98961 1.00234 0.94412 1.70099 1.08989 1.27162 1.50814 0.85316 0.78317 0.79116 0.77799 1.18485 1.20293 1.20305 1.67208 1.09121 1.29850 1.32340 0.91848 0.88773 0.89764 0.93157 0.88833 0.92554 0.81088 0.78752 0.75488 0.93299 0.93303 0.97995 0.98005 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.30 127.77 1.32 2.30 16 2 N -0.61 -12.76 3.38 -753.46 -2.54 -15.30 16 3 C 0.09 1.80 10.51 127.77 1.34 3.14 16 4 C 0.45 12.78 7.39 133.20 0.98 13.77 16 5 C -0.35 -8.24 9.32 22.58 0.21 -8.03 16 6 C 0.20 5.44 11.28 84.56 0.95 6.40 16 7 N -0.63 -23.36 9.58 -198.27 -1.90 -25.26 16 8 C 0.58 22.96 8.43 261.51 2.20 25.16 16 9 N -0.70 -29.07 5.70 -351.09 -2.00 -31.07 16 10 C 0.17 7.79 5.58 86.38 0.48 8.27 16 11 C 0.02 1.09 5.09 29.85 0.15 1.24 16 12 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 13 H 0.06 3.58 7.74 -2.91 -0.02 3.55 16 14 C 0.00 0.15 5.46 84.66 0.46 0.61 16 15 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 16 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 N -0.65 -23.16 9.24 -195.56 -1.81 -24.97 16 21 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 23 H 0.08 0.76 6.04 -2.39 -0.01 0.74 16 24 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 26 H 0.06 1.38 7.33 -2.39 -0.02 1.36 16 27 H 0.17 2.58 6.15 -2.91 -0.02 2.56 16 28 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.41 16.48 8.59 -92.71 -0.80 15.69 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -71.52 291.73 2.70 -68.82 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.30 Total: 15.60 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 8.34 Total: 21.96 kcal Atomic # 7 Polarization: -144.90 SS G_CDS: -7.97 Total: -152.86 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.52 2.70 -68.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308933982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.178 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds