Wall clock time and date at job start Sun Mar 29 2020 21:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 C 1.47195 * 115.55461 * 34.32961 * 16 15 14 18 18 N 5.33746 * 63.17853 * 76.55334 * 2 1 3 19 19 C 1.53012 * 117.49753 * 248.62230 * 16 15 14 20 20 C 1.53002 * 59.99906 * 252.50960 * 19 16 15 21 21 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 22 22 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 26 26 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 27 27 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 29 29 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 32 32 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 33 33 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 34 34 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 35 35 H 1.08999 * 117.49521 * 359.97438 * 19 16 15 36 36 H 1.08995 * 117.49647 * 145.02024 * 19 16 15 37 37 H 1.09001 * 117.50222 * 252.51022 * 20 19 16 38 38 H 1.09007 * 117.51719 * 107.47571 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.4925 0.0531 4.8955 17 6 0.1540 0.6474 4.7472 18 7 -0.8783 1.1076 4.6327 19 6 2.5084 0.8055 5.7575 20 6 1.8762 -0.4885 6.2741 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1299 -0.7209 -1.2496 28 1 1.6766 -1.7490 -1.2493 29 1 1.6670 -0.1929 -5.6868 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2494 32 1 0.5439 0.0413 2.4401 33 1 1.6588 -1.7222 3.6873 34 1 3.1119 -0.6941 3.6867 35 1 3.5540 0.7673 5.4519 36 1 2.1857 1.7408 6.2148 37 1 1.1375 -0.4045 7.0712 38 1 2.5054 -1.3779 6.3080 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309086314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:59 Heat of formation + Delta-G solvation = 38.975614 kcal Electronic energy + Delta-G solvation = -16605.839511 eV Core-core repulsion = 14062.764414 eV Total energy + Delta-G solvation = -2543.075097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17892 -37.45779 -35.71269 -33.96180 -32.07599 -28.04470 -26.92625 -26.36477 -24.40553 -23.14483 -22.86947 -21.78674 -18.03748 -17.20049 -16.78123 -15.88639 -15.21344 -14.76601 -14.15108 -14.06701 -13.76128 -13.43105 -13.13162 -12.92081 -12.81667 -12.48673 -12.17385 -12.10333 -11.85624 -11.77393 -11.09765 -10.97596 -10.87375 -10.85077 -10.50233 -10.34164 -10.32453 -9.80896 -9.66863 -9.29641 -8.89978 -8.48723 -8.25148 -5.98758 -3.95026 2.39294 2.62898 3.32451 3.40235 3.43206 3.56128 3.65620 4.00312 4.42368 4.48970 4.68452 4.73169 5.21355 5.25156 5.34036 5.40993 5.48154 5.54960 5.60978 5.67659 5.69992 5.87129 6.11674 6.23294 6.40915 6.60335 6.68040 6.80809 7.06092 7.12152 7.17023 7.25147 7.32528 7.41245 7.47041 7.53781 7.86253 8.61166 9.07347 9.64097 11.14429 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042401 B = 0.005017 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.196855 B = 5579.461734 C = 5896.649516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.118 4.118 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.068 3.932 14 N -0.687 5.687 15 C 0.100 3.900 16 C -0.046 4.046 17 C 0.244 3.756 18 N -0.427 5.427 19 C -0.139 4.139 20 C -0.150 4.150 21 H 0.033 0.967 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.016 0.984 28 H 0.008 0.992 29 H 0.261 0.739 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.339 0.661 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 -2.924 20.916 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 C -0.175 4.175 4 C -0.041 4.041 5 C -0.545 4.545 6 H 0.095 0.905 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.061 4.061 14 N -0.319 5.319 15 C -0.031 4.031 16 C -0.050 4.050 17 C -0.074 4.074 18 N -0.102 5.102 19 C -0.177 4.177 20 C -0.188 4.188 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.077 -1.764 20.526 20.831 hybrid contribution 0.331 -1.820 -0.320 1.877 sum 3.409 -3.584 20.206 20.803 Atomic orbital electron populations 1.21790 0.95681 1.00447 1.00963 1.20430 0.95022 0.96277 0.93257 1.21608 0.99687 0.95443 1.00744 1.19625 0.96049 0.95216 0.93255 1.21141 1.31463 1.13236 0.88703 0.90453 1.25021 0.95813 0.96755 0.96008 1.69915 1.46133 1.40648 0.97825 0.86839 0.81293 0.83966 0.77510 1.20534 1.21555 1.19110 1.22161 0.99930 0.94707 0.89293 1.60562 1.16646 1.53676 1.01062 1.21502 1.00589 0.94193 0.86775 1.18463 0.86872 1.04740 0.94938 1.27637 0.93224 0.93253 0.93252 1.81273 1.11948 1.09097 1.07896 1.23222 0.98085 0.96321 1.00077 1.23215 1.03218 0.98959 0.93449 0.94829 0.91044 0.94130 0.94084 0.92115 0.93749 0.96612 0.97377 0.92897 0.95636 0.91145 0.84088 0.94143 0.89093 0.86655 0.88008 0.87938 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.89 37.16 0.29 -2.24 16 2 C -0.05 -0.96 0.60 -154.51 -0.09 -1.05 16 3 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 4 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 5 C -0.51 -14.07 8.20 -34.44 -0.28 -14.35 16 6 H 0.08 2.30 5.92 -52.48 -0.31 1.99 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 9 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.31 6.54 56.52 0.37 -5.95 16 13 C 0.07 1.06 4.65 -3.82 -0.02 1.04 16 14 N -0.69 -9.36 5.49 -113.78 -0.62 -9.99 16 15 C 0.10 0.98 5.85 -3.82 -0.02 0.96 16 16 C -0.05 -0.41 2.46 -157.29 -0.39 -0.79 16 17 C 0.24 2.99 13.50 -20.76 -0.28 2.71 16 18 N -0.43 -6.39 18.54 42.16 0.78 -5.61 16 19 C -0.14 -0.88 9.86 -26.72 -0.26 -1.14 16 20 C -0.15 -0.84 9.93 -26.73 -0.27 -1.10 16 21 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 22 H 0.07 1.54 6.62 -51.93 -0.34 1.20 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 27 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 28 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.34 4.98 5.48 -39.29 -0.22 4.77 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 35 H 0.12 0.59 8.05 -51.93 -0.42 0.17 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -31.40 308.77 -6.38 -37.78 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.09 Total: -0.39 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.20 Total: -16.35 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.93 Total: -42.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.40 -6.38 -37.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309086314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.757 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds