Wall clock time and date at job start Sun Mar 29 2020 21:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 C 1.47195 * 115.55461 * 34.32961 * 16 15 14 18 18 N 5.33746 * 63.17853 * 76.55334 * 2 1 3 19 19 C 1.53012 * 117.49753 * 248.62230 * 16 15 14 20 20 C 1.53002 * 59.99906 * 252.50960 * 19 16 15 21 21 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 22 22 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 26 26 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 27 27 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 29 29 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 31 31 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 32 32 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 33 33 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 34 34 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 35 35 H 1.08999 * 117.49521 * 359.97438 * 19 16 15 36 36 H 1.08995 * 117.49647 * 145.02024 * 19 16 15 37 37 H 1.09001 * 117.50222 * 252.51022 * 20 19 16 38 38 H 1.09007 * 117.51719 * 107.47571 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 6 1.4925 0.0531 4.8955 17 6 0.1540 0.6474 4.7472 18 7 -0.8783 1.1076 4.6327 19 6 2.5084 0.8055 5.7575 20 6 1.8762 -0.4885 6.2741 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1299 -0.7209 -1.2496 28 1 1.6766 -1.7490 -1.2493 29 1 1.6670 -0.1929 -5.6868 30 1 1.6767 -1.7490 1.2492 31 1 3.1301 -0.7209 1.2494 32 1 0.5439 0.0413 2.4401 33 1 1.6588 -1.7222 3.6873 34 1 3.1119 -0.6941 3.6867 35 1 3.5540 0.7673 5.4519 36 1 2.1857 1.7408 6.2148 37 1 1.1375 -0.4045 7.0712 38 1 2.5054 -1.3779 6.3080 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309086314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:59 Heat of formation + Delta-G solvation = 19.009251 kcal Electronic energy + Delta-G solvation = -16606.705317 eV Core-core repulsion = 14062.764414 eV Total energy + Delta-G solvation = -2543.940904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97170 -38.80576 -36.64569 -35.32352 -34.00394 -29.82842 -28.11161 -27.96149 -25.76930 -23.99944 -23.48514 -23.23721 -19.54807 -18.86740 -17.99731 -16.86205 -16.35698 -15.97005 -15.71371 -15.25748 -15.04608 -14.60743 -14.40776 -14.37456 -13.95162 -13.82244 -13.56707 -13.48545 -12.86854 -12.78929 -12.60061 -12.49413 -12.26813 -12.21168 -12.06728 -11.73469 -11.45857 -11.41031 -11.02202 -10.91078 -10.79557 -10.69106 -9.26604 -8.20700 -6.21808 1.37799 1.39638 1.51068 1.60637 1.73436 2.41174 2.86812 2.95312 3.14431 3.26532 3.75006 4.03139 4.09534 4.10691 4.19054 4.29280 4.65999 4.71716 4.78063 4.82924 4.86620 4.92947 4.96024 5.00586 5.06636 5.10892 5.15451 5.31544 5.34041 5.43498 5.49801 5.61211 5.72742 5.81041 6.11625 6.35276 6.42784 6.59222 6.85852 7.40767 8.95898 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042401 B = 0.005017 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.196855 B = 5579.461734 C = 5896.649516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.051 4.051 3 C -0.108 4.108 4 C -0.001 4.001 5 C -0.507 4.507 6 H 0.038 0.962 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.243 1.243 13 C 0.080 3.920 14 N -0.696 5.696 15 C 0.101 3.899 16 C -0.074 4.074 17 C 0.263 3.737 18 N -0.490 5.490 19 C -0.130 4.130 20 C -0.124 4.124 21 H 0.049 0.951 22 H 0.034 0.966 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.021 0.979 28 H 0.014 0.986 29 H 0.262 0.738 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.330 0.670 33 H 0.050 0.950 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.468 -4.990 23.616 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 C -0.165 4.165 4 C -0.039 4.039 5 C -0.545 4.545 6 H 0.056 0.944 7 C -0.197 4.197 8 N -0.600 5.600 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.166 1.166 13 C -0.049 4.049 14 N -0.327 5.327 15 C -0.028 4.028 16 C -0.078 4.078 17 C -0.053 4.053 18 N -0.166 5.166 19 C -0.169 4.169 20 C -0.162 4.162 21 H 0.068 0.932 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.149 0.851 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.400 -3.831 23.266 24.190 hybrid contribution -0.430 -1.087 -1.111 1.613 sum 4.969 -4.918 22.154 23.231 Atomic orbital electron populations 1.21686 0.96066 1.00428 0.99948 1.20386 0.94727 0.96144 0.93882 1.21492 0.99934 0.95501 0.99576 1.19581 0.96130 0.95212 0.92975 1.21451 1.30178 1.12091 0.90779 0.94374 1.25988 0.97652 1.00452 0.95616 1.70086 1.48365 1.43006 0.98497 0.85730 0.79629 0.79538 0.78157 1.19694 1.21568 1.16583 1.21904 1.00445 0.94375 0.88157 1.60532 1.16008 1.54337 1.01863 1.21636 1.01798 0.94354 0.85049 1.18693 0.85693 1.07008 0.96373 1.28376 0.93575 0.91870 0.91516 1.81281 1.14019 1.11409 1.09904 1.23381 0.98229 0.96699 0.98555 1.23390 1.02572 0.99543 0.90706 0.93165 0.94692 0.93591 0.93394 0.95789 0.92301 0.96064 0.96815 0.92923 0.94949 0.89885 0.85107 0.93192 0.86877 0.84796 0.88307 0.87634 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 7.89 71.98 0.57 -4.23 16 2 C -0.05 -1.93 0.60 -52.18 -0.03 -1.96 16 3 C -0.11 -4.16 8.06 71.98 0.58 -3.58 16 4 C 0.00 -0.05 3.11 29.85 0.09 0.04 16 5 C -0.51 -28.81 8.20 25.60 0.21 -28.60 16 6 H 0.04 2.41 5.92 -2.91 -0.02 2.39 16 7 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 8 N -0.96 -60.95 13.96 21.45 0.30 -60.65 16 9 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 13 C 0.08 2.27 4.65 86.30 0.40 2.67 16 14 N -0.70 -17.04 5.49 -513.88 -2.82 -19.87 16 15 C 0.10 1.59 5.85 86.30 0.51 2.10 16 16 C -0.07 -1.06 2.46 -53.98 -0.13 -1.19 16 17 C 0.26 6.11 13.50 89.44 1.21 7.32 16 18 N -0.49 -14.67 18.54 20.00 0.37 -14.30 16 19 C -0.13 -1.16 9.86 30.60 0.30 -0.86 16 20 C -0.12 -0.85 9.93 30.60 0.30 -0.55 16 21 H 0.05 1.75 6.57 -2.39 -0.02 1.73 16 22 H 0.03 1.57 6.62 -2.39 -0.02 1.56 16 23 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.02 1.06 6.62 -2.38 -0.02 1.05 16 26 H 0.06 2.07 7.60 -2.39 -0.02 2.05 16 27 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 28 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 29 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.33 9.11 5.48 -89.70 -0.49 8.62 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 1.31 7.90 -2.39 -0.02 1.29 16 35 H 0.13 0.73 8.05 -2.39 -0.02 0.71 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.14 0.29 8.14 -2.38 -0.02 0.27 16 Total: -1.00 -71.03 308.77 4.69 -66.34 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.49 Total: 10.72 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 4.47 Total: -28.47 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -2.15 Total: -94.81 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -71.03 4.69 -66.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309086314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.345 kcal (2) G-P(sol) polarization free energy of solvation -71.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds