Wall clock time and date at job start Sun Mar 29 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47441 * 2 1 4 4 C 1.47205 * 109.47028 * 239.99886 * 2 1 3 5 5 N 2.60806 * 109.47109 * 239.99966 * 2 1 3 6 6 C 1.53006 * 109.47173 * 120.00149 * 2 1 3 7 7 C 1.52999 * 109.46800 * 299.99787 * 6 2 1 8 8 C 1.53006 * 109.46800 * 180.02562 * 7 6 2 9 9 N 1.46499 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.36937 * 120.00204 * 269.99959 * 9 8 7 11 11 H 1.08003 * 119.99955 * 141.41279 * 10 9 8 12 12 C 1.38811 * 119.99840 * 321.42610 * 10 9 8 13 13 N 1.31619 * 119.99914 * 157.77450 * 12 10 9 14 14 Si 1.86797 * 119.99823 * 337.77040 * 12 10 9 15 15 H 1.48494 * 109.47472 * 95.68500 * 14 12 10 16 16 H 1.48510 * 109.47018 * 215.68668 * 14 12 10 17 17 H 1.48501 * 109.46998 * 335.67978 * 14 12 10 18 18 C 1.46505 * 119.99913 * 89.99908 * 9 8 7 19 19 C 1.53006 * 117.49670 * 183.19169 * 18 9 8 20 20 C 1.52998 * 117.49913 * 114.53382 * 18 9 8 21 21 H 1.08994 * 109.46896 * 299.99855 * 1 2 3 22 22 H 1.08998 * 109.47319 * 59.99996 * 1 2 3 23 23 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47367 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47108 * 300.00513 * 3 2 1 26 26 H 1.09004 * 109.46925 * 59.99585 * 3 2 1 27 27 H 1.08998 * 109.47165 * 179.97438 * 6 2 1 28 28 H 1.09000 * 109.46725 * 59.99819 * 6 2 1 29 29 H 1.08998 * 109.47166 * 60.00118 * 7 6 2 30 30 H 1.08994 * 109.47211 * 299.99888 * 7 6 2 31 31 H 1.08998 * 109.47165 * 60.00117 * 8 7 6 32 32 H 1.09000 * 109.46725 * 300.00033 * 8 7 6 33 33 H 0.96999 * 119.99752 * 179.97438 * 13 12 10 34 34 H 1.09001 * 115.55232 * 328.85904 * 18 9 8 35 35 H 1.08993 * 117.49982 * 0.02562 * 19 18 9 36 36 H 1.09000 * 117.49376 * 145.01943 * 19 18 9 37 37 H 1.09001 * 117.50045 * 214.98064 * 20 18 9 38 38 H 1.09006 * 117.49626 * 359.97234 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3994 -1.2295 -2.1295 6 6 2.0400 -0.7213 1.2493 7 6 1.5301 0.0000 2.4985 8 6 2.0406 -0.7209 3.7477 9 7 1.5518 -0.0307 4.9439 10 6 2.2911 0.9773 5.5030 11 1 1.7978 1.8506 5.9036 12 6 3.6747 0.8768 5.5545 13 7 4.4095 1.9627 5.6690 14 14 4.4934 -0.7996 5.4614 15 1 4.8943 -1.0776 4.0589 16 1 5.6965 -0.8119 6.3319 17 1 3.5403 -1.8421 5.9198 18 6 0.2720 -0.4188 5.5420 19 6 -0.2195 0.3889 6.7450 20 6 0.3045 -1.0358 6.9416 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 -0.7217 1.2490 28 1 1.6766 -1.7489 1.2492 29 1 0.4401 0.0000 2.4985 30 1 1.8934 1.0276 2.4985 31 1 3.1306 -0.7206 3.7475 32 1 1.6776 -1.7487 3.7479 33 1 5.3763 1.8924 5.7054 34 1 -0.4790 -0.7911 4.8451 35 1 0.4092 1.2093 7.0911 36 1 -1.2937 0.5476 6.8396 37 1 -0.4252 -1.8139 7.1658 38 1 1.2782 -1.1534 7.4173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331752492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:35 Heat of formation + Delta-G solvation = 59.159403 kcal Electronic energy + Delta-G solvation = -16984.916316 eV Core-core repulsion = 14442.716454 eV Total energy + Delta-G solvation = -2542.199862 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.57917 -37.21115 -35.44774 -33.70350 -31.81002 -29.75518 -27.39933 -25.86128 -24.20190 -22.97877 -21.49407 -20.24251 -19.61409 -17.08229 -16.20734 -15.59016 -15.34779 -14.73402 -14.55515 -13.93628 -13.65148 -13.61492 -12.92590 -12.62216 -12.50549 -12.36153 -12.06736 -12.03176 -11.79312 -11.74123 -11.16279 -10.99181 -10.84474 -10.71769 -10.58850 -10.52106 -10.22557 -9.89646 -9.64859 -9.43787 -9.40479 -8.52863 -6.72961 -6.04901 -3.46932 2.79727 2.80672 3.27198 3.44579 3.50661 3.89013 4.47694 4.71639 4.80737 4.84000 4.92540 5.02105 5.26457 5.50457 5.61658 5.64929 5.78311 5.79695 5.85844 5.88253 5.98049 6.00338 6.05158 6.08690 6.16651 6.27220 6.38865 6.42032 6.44048 6.51286 6.82010 6.92096 7.01736 7.10793 7.58485 8.02471 8.36771 8.96324 9.66873 10.07695 11.09995 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.007563 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.061046 B = 3701.572144 C = 4280.774451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 C -0.144 4.144 4 C 0.223 3.777 5 N -0.451 5.451 6 C -0.109 4.109 7 C -0.135 4.135 8 C 0.140 3.860 9 N -0.574 5.574 10 C -0.268 4.268 11 H 0.082 0.918 12 C 0.040 3.960 13 N -0.897 5.897 14 Si 0.872 3.128 15 H -0.285 1.285 16 H -0.302 1.302 17 H -0.267 1.267 18 C 0.121 3.879 19 C -0.188 4.188 20 C -0.226 4.226 21 H 0.085 0.915 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -3.273 -6.658 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 C -0.202 4.202 4 C -0.095 4.095 5 N -0.126 5.126 6 C -0.149 4.149 7 C -0.174 4.174 8 C 0.015 3.985 9 N -0.293 5.293 10 C -0.396 4.396 11 H 0.100 0.900 12 C -0.161 4.161 13 N -0.537 5.537 14 Si 0.702 3.298 15 H -0.213 1.213 16 H -0.230 1.230 17 H -0.192 1.192 18 C 0.012 3.988 19 C -0.226 4.226 20 C -0.267 4.267 21 H 0.104 0.896 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.545 -3.994 -8.069 11.747 hybrid contribution 0.586 -0.764 0.416 1.049 sum -6.959 -4.759 -7.653 11.386 Atomic orbital electron populations 1.21937 0.91613 1.02946 1.03464 1.18400 0.96753 0.95168 0.86713 1.21965 1.02096 0.92640 1.03531 1.29420 0.92801 0.93082 0.94190 1.81160 1.09485 1.10003 1.11981 1.21695 1.01492 0.99212 0.92477 1.22250 1.00619 1.01498 0.93058 1.21141 0.98054 0.93692 0.85639 1.43689 1.19749 1.40037 1.25814 1.18718 0.88107 0.95832 1.36945 0.90015 1.25483 0.96582 0.96240 0.97781 1.69856 1.05390 1.27282 1.51190 0.87005 0.78754 0.87238 0.76810 1.21254 1.23011 1.19171 1.21167 0.90115 1.00406 0.87071 1.23058 0.99050 0.95636 1.04905 1.23388 1.01804 0.95219 1.06281 0.89619 0.92211 0.91980 0.91700 0.92288 0.89295 0.91259 0.91563 0.91951 0.90291 0.92815 0.94215 0.92657 0.89101 0.87943 0.90549 0.90923 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.08 37.16 0.30 -1.04 16 2 C 0.03 0.38 0.72 -157.29 -0.11 0.27 16 3 C -0.14 -1.60 8.08 37.16 0.30 -1.30 16 4 C 0.22 3.02 13.86 -20.76 -0.29 2.73 16 5 N -0.45 -7.15 18.54 42.15 0.78 -6.37 16 6 C -0.11 -1.45 4.23 -26.73 -0.11 -1.56 16 7 C -0.13 -2.09 4.83 -26.73 -0.13 -2.22 16 8 C 0.14 2.73 4.55 -4.04 -0.02 2.71 16 9 N -0.57 -12.58 2.39 -165.65 -0.40 -12.97 16 10 C -0.27 -6.95 8.95 -15.06 -0.13 -7.08 16 11 H 0.08 2.31 6.86 -52.48 -0.36 1.95 16 12 C 0.04 1.10 5.30 -17.43 -0.09 1.01 16 13 N -0.90 -26.14 13.97 55.49 0.78 -25.37 16 14 Si 0.87 21.43 25.08 -169.99 -4.26 17.16 16 15 H -0.28 -6.75 6.69 56.52 0.38 -6.37 16 16 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.12 2.30 6.56 -67.93 -0.45 1.85 16 19 C -0.19 -3.43 9.80 -26.69 -0.26 -3.70 16 20 C -0.23 -4.18 10.36 -26.69 -0.28 -4.45 16 21 H 0.09 0.78 6.43 -51.93 -0.33 0.45 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.01 6.43 -51.93 -0.33 0.68 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 30 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 31 H 0.05 1.18 3.40 -51.93 -0.18 1.00 16 32 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.10 2.13 6.44 -51.93 -0.33 1.79 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -29.34 306.42 -5.77 -35.11 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.01 Total: 0.60 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.27 Total: -12.78 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 1.16 Total: -44.71 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.26 Total: 17.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.34 -5.77 -35.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331752492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.265 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds