Wall clock time and date at job start Sun Mar 29 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47441 * 2 1 4 4 C 1.47205 * 109.47028 * 239.99886 * 2 1 3 5 5 N 2.60806 * 109.47109 * 239.99966 * 2 1 3 6 6 C 1.53006 * 109.47173 * 120.00149 * 2 1 3 7 7 C 1.52999 * 109.46800 * 299.99787 * 6 2 1 8 8 C 1.53006 * 109.46800 * 180.02562 * 7 6 2 9 9 N 1.46499 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.36937 * 120.00204 * 269.99959 * 9 8 7 11 11 H 1.08003 * 119.99955 * 141.41279 * 10 9 8 12 12 C 1.38811 * 119.99840 * 321.42610 * 10 9 8 13 13 N 1.31619 * 119.99914 * 157.77450 * 12 10 9 14 14 Si 1.86797 * 119.99823 * 337.77040 * 12 10 9 15 15 H 1.48494 * 109.47472 * 95.68500 * 14 12 10 16 16 H 1.48510 * 109.47018 * 215.68668 * 14 12 10 17 17 H 1.48501 * 109.46998 * 335.67978 * 14 12 10 18 18 C 1.46505 * 119.99913 * 89.99908 * 9 8 7 19 19 C 1.53006 * 117.49670 * 183.19169 * 18 9 8 20 20 C 1.52998 * 117.49913 * 114.53382 * 18 9 8 21 21 H 1.08994 * 109.46896 * 299.99855 * 1 2 3 22 22 H 1.08998 * 109.47319 * 59.99996 * 1 2 3 23 23 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47367 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47108 * 300.00513 * 3 2 1 26 26 H 1.09004 * 109.46925 * 59.99585 * 3 2 1 27 27 H 1.08998 * 109.47165 * 179.97438 * 6 2 1 28 28 H 1.09000 * 109.46725 * 59.99819 * 6 2 1 29 29 H 1.08998 * 109.47166 * 60.00118 * 7 6 2 30 30 H 1.08994 * 109.47211 * 299.99888 * 7 6 2 31 31 H 1.08998 * 109.47165 * 60.00117 * 8 7 6 32 32 H 1.09000 * 109.46725 * 300.00033 * 8 7 6 33 33 H 0.96999 * 119.99752 * 179.97438 * 13 12 10 34 34 H 1.09001 * 115.55232 * 328.85904 * 18 9 8 35 35 H 1.08993 * 117.49982 * 0.02562 * 19 18 9 36 36 H 1.09000 * 117.49376 * 145.01943 * 19 18 9 37 37 H 1.09001 * 117.50045 * 214.98064 * 20 18 9 38 38 H 1.09006 * 117.49626 * 359.97234 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 -1.2019 5 7 2.3994 -1.2295 -2.1295 6 6 2.0400 -0.7213 1.2493 7 6 1.5301 0.0000 2.4985 8 6 2.0406 -0.7209 3.7477 9 7 1.5518 -0.0307 4.9439 10 6 2.2911 0.9773 5.5030 11 1 1.7978 1.8506 5.9036 12 6 3.6747 0.8768 5.5545 13 7 4.4095 1.9627 5.6690 14 14 4.4934 -0.7996 5.4614 15 1 4.8943 -1.0776 4.0589 16 1 5.6965 -0.8119 6.3319 17 1 3.5403 -1.8421 5.9198 18 6 0.2720 -0.4188 5.5420 19 6 -0.2195 0.3889 6.7450 20 6 0.3045 -1.0358 6.9416 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 -0.7217 1.2490 28 1 1.6766 -1.7489 1.2492 29 1 0.4401 0.0000 2.4985 30 1 1.8934 1.0276 2.4985 31 1 3.1306 -0.7206 3.7475 32 1 1.6776 -1.7487 3.7479 33 1 5.3763 1.8924 5.7054 34 1 -0.4790 -0.7911 4.8451 35 1 0.4092 1.2093 7.0911 36 1 -1.2937 0.5476 6.8396 37 1 -0.4252 -1.8139 7.1658 38 1 1.2782 -1.1534 7.4173 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331752492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:35 Heat of formation + Delta-G solvation = 43.007086 kcal Electronic energy + Delta-G solvation = -16985.616733 eV Core-core repulsion = 14442.716454 eV Total energy + Delta-G solvation = -2542.900279 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68436 -38.72796 -36.62650 -35.27257 -33.63126 -31.22579 -28.20849 -27.26939 -25.81141 -24.32679 -22.95089 -21.47876 -21.27383 -18.52599 -17.62973 -17.26873 -16.94814 -15.93836 -15.60862 -15.41527 -15.04132 -14.74973 -14.40256 -14.10499 -13.95994 -13.74590 -13.55983 -13.17413 -12.88894 -12.70194 -12.63379 -12.42725 -12.25705 -12.04397 -11.96730 -11.74026 -11.68615 -11.54051 -11.21709 -11.03901 -10.86536 -10.53210 -8.52731 -8.15629 -5.51652 1.30215 1.42588 1.52214 1.71705 1.74570 2.43993 2.84868 3.08420 3.29956 3.42763 3.85996 3.91599 4.10337 4.33140 4.38246 4.46637 4.53228 4.58847 4.73319 4.78527 4.86379 4.87102 4.98917 5.01004 5.03464 5.10943 5.12906 5.17917 5.31539 5.34346 5.39954 5.58232 5.60524 5.72143 6.02472 6.28137 6.52867 7.08491 7.72497 8.12701 9.03706 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.007563 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.061046 B = 3701.572144 C = 4280.774451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 C -0.145 4.145 4 C 0.243 3.757 5 N -0.493 5.493 6 C -0.105 4.105 7 C -0.120 4.120 8 C 0.131 3.869 9 N -0.588 5.588 10 C -0.240 4.240 11 H 0.049 0.951 12 C -0.014 4.014 13 N -0.946 5.946 14 Si 0.928 3.072 15 H -0.273 1.273 16 H -0.317 1.317 17 H -0.262 1.262 18 C 0.110 3.890 19 C -0.187 4.187 20 C -0.221 4.221 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.260 0.740 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 -4.903 -7.609 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.037 3.963 3 C -0.203 4.203 4 C -0.074 4.074 5 N -0.168 5.168 6 C -0.144 4.144 7 C -0.159 4.159 8 C 0.006 3.994 9 N -0.307 5.307 10 C -0.370 4.370 11 H 0.066 0.934 12 C -0.211 4.211 13 N -0.590 5.590 14 Si 0.758 3.242 15 H -0.200 1.200 16 H -0.247 1.247 17 H -0.186 1.186 18 C 0.002 3.998 19 C -0.225 4.225 20 C -0.262 4.262 21 H 0.111 0.889 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.062 -5.659 -9.036 14.660 hybrid contribution 1.252 -0.220 0.756 1.479 sum -8.810 -5.879 -8.280 13.444 Atomic orbital electron populations 1.21963 0.89358 1.03921 1.04490 1.18445 0.98348 0.94580 0.84933 1.21978 1.01380 0.92690 1.04278 1.29718 0.91611 0.92114 0.93927 1.81186 1.10894 1.11344 1.13384 1.21613 1.00580 1.00081 0.92175 1.22033 1.01958 0.99780 0.92166 1.21287 0.96647 0.95240 0.86190 1.43825 1.20416 1.39491 1.27013 1.18562 0.88104 0.95692 1.34689 0.93372 1.25981 0.97401 0.98605 0.99070 1.69971 1.05340 1.29089 1.54644 0.86082 0.77285 0.83850 0.76947 1.20017 1.24680 1.18608 1.21564 0.89351 1.00850 0.87986 1.23033 1.00521 0.94445 1.04469 1.23369 1.01171 0.96299 1.05350 0.88899 0.90953 0.91043 0.92966 0.90565 0.89529 0.92874 0.89867 0.89395 0.92536 0.95562 0.91749 0.93092 0.85018 0.91553 0.86913 0.87317 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.08 71.98 0.58 -1.52 16 2 C 0.04 0.83 0.72 -53.99 -0.04 0.79 16 3 C -0.15 -2.98 8.08 71.98 0.58 -2.40 16 4 C 0.24 6.10 13.86 89.44 1.24 7.34 16 5 N -0.49 -14.93 18.54 20.01 0.37 -14.56 16 6 C -0.11 -2.51 4.23 30.60 0.13 -2.38 16 7 C -0.12 -3.42 4.83 30.60 0.15 -3.27 16 8 C 0.13 4.79 4.55 86.38 0.39 5.18 16 9 N -0.59 -24.88 2.39 -678.00 -1.62 -26.50 16 10 C -0.24 -12.68 8.95 84.03 0.75 -11.93 16 11 H 0.05 2.84 6.86 -2.91 -0.02 2.82 16 12 C -0.01 -0.79 5.30 84.86 0.45 -0.34 16 13 N -0.95 -57.33 13.97 21.65 0.30 -57.03 16 14 Si 0.93 45.17 25.08 68.60 1.72 46.89 16 15 H -0.27 -12.59 6.69 99.48 0.67 -11.92 16 16 H -0.32 -16.07 7.11 99.48 0.71 -15.37 16 17 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 18 C 0.11 3.82 6.56 44.99 0.30 4.11 16 19 C -0.19 -6.41 9.80 30.62 0.30 -6.11 16 20 C -0.22 -7.58 10.36 30.62 0.32 -7.26 16 21 H 0.09 1.30 6.43 -2.39 -0.02 1.29 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.09 1.84 6.43 -2.39 -0.02 1.83 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 2.07 6.43 -2.39 -0.02 2.05 16 30 H 0.06 1.88 6.43 -2.39 -0.02 1.87 16 31 H 0.03 1.12 3.40 -2.39 -0.01 1.11 16 32 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.07 2.78 6.44 -2.39 -0.02 2.76 16 36 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -65.49 306.42 6.91 -58.58 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.99 Total: 10.41 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 5.15 Total: -17.79 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -0.95 Total: -98.09 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.72 Total: 46.89 kcal Total: -65.49 6.91 -58.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331752492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.591 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds