Wall clock time and date at job start Sun Mar 29 2020 21:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00113 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99923 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47375 * 89.99678 * 9 7 5 11 11 H 1.48508 * 109.47196 * 209.99673 * 9 7 5 12 12 H 1.48504 * 109.47051 * 329.99297 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 N 1.46899 * 109.47254 * 300.00134 * 13 2 1 15 15 C 1.47477 * 111.00047 * 265.97286 * 14 13 2 16 16 C 1.53513 * 87.92932 * 221.29743 * 15 14 13 17 17 C 1.53002 * 114.16931 * 139.67241 * 16 15 14 18 18 C 1.47209 * 114.16880 * 272.37539 * 16 15 14 19 19 N 5.88636 * 77.11245 * 72.20628 * 2 1 3 20 20 C 1.47481 * 111.00017 * 169.99694 * 14 13 2 21 21 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 27 27 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 29 29 H 0.97008 * 120.00167 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 31 31 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 32 32 H 1.09000 * 113.47846 * 336.05901 * 15 14 13 33 33 H 1.08998 * 113.47506 * 106.53321 * 15 14 13 34 34 H 1.08995 * 109.47061 * 326.15461 * 17 16 15 35 35 H 1.09000 * 109.47128 * 86.15779 * 17 16 15 36 36 H 1.09001 * 109.46987 * 206.15429 * 17 16 15 37 37 H 1.09000 * 113.47744 * 253.47034 * 20 14 13 38 38 H 1.08996 * 113.47276 * 23.88258 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 1.4324 0.1382 -4.8057 9 14 2.9453 -2.0001 -3.9034 10 1 2.0868 -3.2110 -3.9494 11 1 3.7377 -1.9073 -5.1560 12 1 3.8654 -2.0895 -2.7412 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.5412 0.9489 2.9360 16 6 2.2132 0.4864 4.3626 17 6 3.4334 0.3638 5.2775 18 6 1.0865 1.2016 4.9840 19 7 0.2172 1.7535 5.4636 20 6 1.8181 -0.8217 3.6630 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 -0.7207 -1.2494 28 1 1.6767 -1.7488 -1.2493 29 1 1.6674 -0.1927 -5.6868 30 1 3.1301 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2492 32 1 3.5623 0.7217 2.6300 33 1 2.2622 1.9842 2.7403 34 1 4.2948 0.0408 4.6930 35 1 3.6451 1.3315 5.7324 36 1 3.2294 -0.3681 6.0590 37 1 0.9264 -1.2868 4.0833 38 1 2.6457 -1.5220 3.5505 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332079438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:20 Heat of formation + Delta-G solvation = 51.570767 kcal Electronic energy + Delta-G solvation = -17020.686609 eV Core-core repulsion = 14478.157678 eV Total energy + Delta-G solvation = -2542.528930 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89176 -36.95976 -35.85239 -32.58370 -31.57287 -27.96227 -27.22987 -26.60952 -25.70889 -24.04574 -22.32018 -21.17718 -17.97258 -16.95022 -16.73099 -15.60037 -15.28554 -14.95568 -14.15436 -13.83240 -13.75663 -13.40084 -13.14149 -12.85562 -12.72804 -12.53179 -12.31779 -12.20943 -12.00779 -11.68525 -11.18029 -11.00608 -10.91535 -10.79993 -10.57793 -10.41476 -10.38529 -9.78287 -9.68963 -9.24540 -8.99649 -8.71373 -8.49902 -5.99780 -3.96043 2.55725 2.68469 3.31269 3.39057 3.41069 3.64543 4.01958 4.15226 4.45809 4.47643 5.00262 5.08261 5.23908 5.31707 5.33455 5.35320 5.43903 5.53001 5.63201 5.72654 5.75002 5.89420 6.03732 6.09165 6.42030 6.46021 6.65246 6.68361 6.81014 7.01584 7.11042 7.18544 7.24098 7.34389 7.47507 7.50317 7.85142 8.60237 9.06621 9.63069 11.13413 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.043878 B = 0.005539 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.974341 B = 5053.805920 C = 5320.096564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.042 4.042 3 C -0.129 4.129 4 C -0.005 4.005 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.027 3.973 14 N -0.462 5.462 15 C 0.021 3.979 16 C -0.010 4.010 17 C -0.131 4.131 18 C 0.244 3.756 19 N -0.432 5.432 20 C 0.016 3.984 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 -2.288 17.656 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.042 4.042 3 C -0.186 4.186 4 C -0.043 4.043 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.101 4.101 14 N -0.184 5.184 15 C -0.109 4.109 16 C -0.014 4.014 17 C -0.189 4.189 18 C -0.074 4.074 19 N -0.107 5.107 20 C -0.114 4.114 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.107 -1.261 17.979 18.485 hybrid contribution 1.711 -1.413 -0.485 2.272 sum 5.818 -2.675 17.494 18.629 Atomic orbital electron populations 1.21626 0.94695 1.00473 1.00879 1.20317 0.96053 0.95215 0.92611 1.21819 0.99305 0.96345 1.01167 1.19643 0.95779 0.95410 0.93434 1.21137 1.31427 1.13233 0.88675 0.90442 1.25021 0.95829 0.96725 0.96025 1.69911 1.46113 1.40664 0.97830 0.86847 0.81263 0.84070 0.77445 1.20477 1.21593 1.19198 1.22924 0.97618 0.98189 0.91323 1.69038 1.39800 1.08457 1.01103 1.24139 0.96941 1.00563 0.89239 1.19274 0.90053 0.96990 0.95125 1.21692 0.94929 1.03105 0.99214 1.27932 0.93389 0.93342 0.92705 1.81206 1.10225 1.09252 1.09987 1.23931 1.01919 0.93968 0.91628 0.93670 0.92057 0.94397 0.94310 0.91541 0.94085 0.96938 0.97252 0.92896 0.93732 0.91106 0.89270 0.88914 0.90366 0.91494 0.91273 0.89269 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.06 37.16 0.30 -2.00 16 2 C -0.04 -0.77 0.60 -154.51 -0.09 -0.87 16 3 C -0.13 -2.33 7.43 37.16 0.28 -2.06 16 4 C 0.00 -0.11 3.11 -27.89 -0.09 -0.20 16 5 C -0.51 -13.83 8.20 -34.44 -0.28 -14.11 16 6 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.03 0.40 3.89 -3.83 -0.01 0.39 16 14 N -0.46 -5.87 5.15 -244.60 -1.26 -7.13 16 15 C 0.02 0.22 5.28 -7.54 -0.04 0.18 16 16 C -0.01 -0.09 1.44 -156.76 -0.23 -0.32 16 17 C -0.13 -0.76 9.26 37.16 0.34 -0.42 16 18 C 0.24 2.96 14.48 -20.76 -0.30 2.66 16 19 N -0.43 -6.42 18.54 42.15 0.78 -5.63 16 20 C 0.02 0.15 6.82 -7.54 -0.05 0.10 16 21 H 0.04 0.81 7.60 -51.93 -0.39 0.42 16 22 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 26 H 0.04 0.66 5.82 -51.93 -0.30 0.35 16 27 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 28 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.04 0.60 7.30 -51.93 -0.38 0.22 16 31 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.09 0.78 7.21 -51.93 -0.37 0.41 16 33 H 0.09 1.04 7.02 -51.93 -0.36 0.68 16 34 H 0.08 0.36 7.90 -51.93 -0.41 -0.05 16 35 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.09 0.64 7.87 -51.93 -0.41 0.23 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -31.32 301.60 -6.20 -37.52 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -6.10 Total: -4.28 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.27 Total: -14.90 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.30 Total: -39.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.32 -6.20 -37.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332079438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.089 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds