Wall clock time and date at job start Sun Mar 29 2020 21:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00113 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99923 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47375 * 89.99678 * 9 7 5 11 11 H 1.48508 * 109.47196 * 209.99673 * 9 7 5 12 12 H 1.48504 * 109.47051 * 329.99297 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 N 1.46899 * 109.47254 * 300.00134 * 13 2 1 15 15 C 1.47477 * 111.00047 * 265.97286 * 14 13 2 16 16 C 1.53513 * 87.92932 * 221.29743 * 15 14 13 17 17 C 1.53002 * 114.16931 * 139.67241 * 16 15 14 18 18 C 1.47209 * 114.16880 * 272.37539 * 16 15 14 19 19 N 5.88636 * 77.11245 * 72.20628 * 2 1 3 20 20 C 1.47481 * 111.00017 * 169.99694 * 14 13 2 21 21 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 27 27 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 28 28 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 29 29 H 0.97008 * 120.00167 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 31 31 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 32 32 H 1.09000 * 113.47846 * 336.05901 * 15 14 13 33 33 H 1.08998 * 113.47506 * 106.53321 * 15 14 13 34 34 H 1.08995 * 109.47061 * 326.15461 * 17 16 15 35 35 H 1.09000 * 109.47128 * 86.15779 * 17 16 15 36 36 H 1.09001 * 109.46987 * 206.15429 * 17 16 15 37 37 H 1.09000 * 113.47744 * 253.47034 * 20 14 13 38 38 H 1.08996 * 113.47276 * 23.88258 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 1.4324 0.1382 -4.8057 9 14 2.9453 -2.0001 -3.9034 10 1 2.0868 -3.2110 -3.9494 11 1 3.7377 -1.9073 -5.1560 12 1 3.8654 -2.0895 -2.7412 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.5412 0.9489 2.9360 16 6 2.2132 0.4864 4.3626 17 6 3.4334 0.3638 5.2775 18 6 1.0865 1.2016 4.9840 19 7 0.2172 1.7535 5.4636 20 6 1.8181 -0.8217 3.6630 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 -0.7207 -1.2494 28 1 1.6767 -1.7488 -1.2493 29 1 1.6674 -0.1927 -5.6868 30 1 3.1301 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2492 32 1 3.5623 0.7217 2.6300 33 1 2.2622 1.9842 2.7403 34 1 4.2948 0.0408 4.6930 35 1 3.6451 1.3315 5.7324 36 1 3.2294 -0.3681 6.0590 37 1 0.9264 -1.2868 4.0833 38 1 2.6457 -1.5220 3.5505 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332079438.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:19 Heat of formation + Delta-G solvation = 30.553174 kcal Electronic energy + Delta-G solvation = -17021.598000 eV Core-core repulsion = 14478.157678 eV Total energy + Delta-G solvation = -2543.440322 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.74199 -38.33133 -36.99162 -34.50069 -32.61878 -29.70514 -28.31131 -27.92306 -26.66898 -25.32705 -23.70661 -22.20371 -19.47308 -18.82827 -17.67707 -16.60056 -16.25534 -16.11234 -15.97870 -15.06087 -14.93431 -14.44539 -14.40696 -14.28986 -13.97035 -13.68693 -13.33752 -13.27644 -12.98951 -12.75043 -12.73074 -12.69768 -12.26774 -12.13563 -12.03321 -11.88259 -11.66421 -11.28362 -11.22243 -10.87968 -10.74299 -10.66925 -9.66045 -8.18478 -6.19338 1.39880 1.41004 1.52297 1.64806 1.78063 2.43008 2.84874 3.16907 3.17601 3.42778 3.74311 4.06258 4.19380 4.35245 4.44514 4.51511 4.65970 4.69262 4.81516 4.84546 4.90151 4.96036 5.02370 5.05088 5.05981 5.12425 5.21236 5.38255 5.40827 5.47648 5.49211 5.56231 5.66711 5.80872 5.87188 6.14544 6.45849 6.59734 6.88923 7.43233 8.98219 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.043878 B = 0.005539 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.974341 B = 5053.805920 C = 5320.096564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.043 4.043 3 C -0.120 4.120 4 C -0.003 4.003 5 C -0.505 4.505 6 H 0.037 0.963 7 C -0.003 4.003 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.240 1.240 13 C 0.040 3.960 14 N -0.494 5.494 15 C 0.019 3.981 16 C 0.000 4.000 17 C -0.126 4.126 18 C 0.262 3.738 19 N -0.489 5.489 20 C 0.023 3.977 21 H 0.055 0.945 22 H 0.022 0.978 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.013 0.987 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.683 -4.369 19.908 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.177 4.177 4 C -0.040 4.040 5 C -0.543 4.543 6 H 0.055 0.945 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.163 1.163 13 C -0.088 4.088 14 N -0.216 5.216 15 C -0.111 4.111 16 C -0.004 4.004 17 C -0.184 4.184 18 C -0.055 4.055 19 N -0.165 5.165 20 C -0.107 4.107 21 H 0.074 0.926 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.671 -3.341 20.268 21.598 hybrid contribution 0.828 -0.667 -1.175 1.585 sum 7.499 -4.008 19.093 20.901 Atomic orbital electron populations 1.21517 0.95784 1.00056 0.99411 1.20273 0.95168 0.95520 0.93428 1.21712 1.00019 0.95992 0.99996 1.19608 0.96036 0.95294 0.93111 1.21470 1.29989 1.12003 0.90829 0.94511 1.25999 0.97733 1.00452 0.95644 1.70090 1.48472 1.43085 0.98494 0.85731 0.79618 0.79535 0.78155 1.19823 1.21767 1.16316 1.22673 0.98609 0.97648 0.89900 1.68972 1.41155 1.09914 1.01576 1.24257 0.97695 0.99372 0.89759 1.19394 0.89911 0.96109 0.95001 1.21741 0.93813 1.03697 0.99160 1.28664 0.93111 0.92258 0.91454 1.81221 1.12123 1.11113 1.12032 1.24030 1.03042 0.94192 0.89390 0.92579 0.95926 0.94224 0.92912 0.95723 0.92190 0.96047 0.96857 0.93003 0.91653 0.90676 0.86654 0.90351 0.88070 0.91453 0.90112 0.89614 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 8.06 71.98 0.58 -3.69 16 2 C -0.04 -1.56 0.60 -52.18 -0.03 -1.59 16 3 C -0.12 -4.25 7.43 71.98 0.53 -3.72 16 4 C 0.00 -0.12 3.11 29.84 0.09 -0.02 16 5 C -0.50 -28.19 8.20 25.60 0.21 -27.98 16 6 H 0.04 2.30 5.92 -2.91 -0.02 2.28 16 7 C 0.00 -0.18 5.47 84.65 0.46 0.28 16 8 N -0.96 -60.59 13.96 21.45 0.30 -60.29 16 9 Si 0.95 43.61 27.47 68.60 1.88 45.49 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 13 C 0.04 1.02 3.89 86.30 0.34 1.35 16 14 N -0.49 -10.89 5.15 -927.77 -4.77 -15.67 16 15 C 0.02 0.32 5.28 83.58 0.44 0.76 16 16 C 0.00 0.00 1.44 -53.64 -0.08 -0.08 16 17 C -0.13 -0.89 9.26 71.98 0.67 -0.23 16 18 C 0.26 5.91 14.48 89.45 1.30 7.20 16 19 N -0.49 -14.30 18.54 20.01 0.37 -13.93 16 20 C 0.02 0.33 6.82 83.58 0.57 0.90 16 21 H 0.06 2.01 7.60 -2.39 -0.02 1.99 16 22 H 0.02 1.01 6.62 -2.39 -0.02 0.99 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.02 1.05 6.62 -2.39 -0.02 1.03 16 26 H 0.06 1.87 5.82 -2.39 -0.01 1.86 16 27 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 28 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 29 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 30 H 0.07 1.40 7.30 -2.39 -0.02 1.39 16 31 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 32 H 0.12 1.40 7.21 -2.39 -0.02 1.38 16 33 H 0.08 1.56 7.02 -2.39 -0.02 1.55 16 34 H 0.10 0.32 7.90 -2.39 -0.02 0.31 16 35 H 0.07 0.51 8.13 -2.39 -0.02 0.49 16 36 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.12 1.04 7.87 -2.39 -0.02 1.02 16 Total: -1.00 -71.41 301.60 3.83 -67.57 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 0.97 Total: 3.63 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 5.08 Total: -26.81 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -4.10 Total: -89.88 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -71.41 3.83 -67.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332079438.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.126 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds