Wall clock time and date at job start Sun Mar 29 2020 22:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48506 * 109.46819 * 267.58744 * 3 2 1 5 5 H 1.48499 * 109.46917 * 27.58385 * 3 2 1 6 6 H 1.48493 * 109.47255 * 147.58833 * 3 2 1 7 7 C 1.38809 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99951 * 164.54689 * 7 2 1 9 9 N 1.36941 * 120.00118 * 344.54348 * 7 2 1 10 10 C 1.47140 * 121.37191 * 155.34578 * 9 7 2 11 11 C 1.52784 * 107.95415 * 115.63514 * 10 9 7 12 12 C 1.50606 * 110.82648 * 47.40300 * 11 10 9 13 13 C 1.38992 * 117.60597 * 160.38301 * 12 11 10 14 14 C 1.37915 * 120.61197 * 179.59484 * 13 12 11 15 15 C 1.38242 * 119.84506 * 359.94810 * 14 13 12 16 16 C 1.38082 * 119.69718 * 0.20606 * 15 14 13 17 17 Cl 1.73599 * 119.75754 * 179.97438 * 16 15 14 18 18 C 1.37649 * 122.87128 * 340.29346 * 12 11 10 19 19 C 1.46686 * 121.35610 * 335.32541 * 9 7 2 20 20 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.71915 * 356.03784 * 10 9 7 22 22 H 1.09002 * 109.77737 * 235.27282 * 10 9 7 23 23 H 1.09001 * 109.20311 * 287.07001 * 11 10 9 24 24 H 1.09001 * 109.19794 * 167.73224 * 11 10 9 25 25 H 1.07996 * 119.69438 * 359.58716 * 13 12 11 26 26 H 1.08003 * 120.07529 * 179.97438 * 14 13 12 27 27 H 1.07990 * 120.15248 * 180.22443 * 15 14 13 28 28 H 1.09003 * 109.43686 * 104.32928 * 19 9 7 29 29 H 1.08999 * 109.43566 * 344.44998 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5487 2.0169 -1.3989 5 1 1.4230 2.6668 0.6483 6 1 3.5213 1.4554 0.7504 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2192 -0.2487 9 7 1.3626 -2.3665 0.3171 10 6 1.8504 -3.6691 -0.1628 11 6 2.2708 -4.4919 1.0540 12 6 1.2119 -4.4452 2.1239 13 6 1.2307 -5.4417 3.0927 14 6 0.2951 -5.4539 4.1059 15 6 -0.6712 -4.4669 4.1619 16 6 -0.6949 -3.4773 3.1992 17 17 -1.9081 -2.2374 3.2677 18 6 0.2448 -3.4670 2.1757 19 6 0.1545 -2.3661 1.1490 20 1 -0.4850 0.8400 -0.0004 21 1 2.7061 -3.5215 -0.8216 22 1 1.0550 -4.1855 -0.7003 23 1 3.2021 -4.0906 1.4538 24 1 2.4278 -5.5269 0.7500 25 1 1.9849 -6.2135 3.0517 26 1 0.3175 -6.2326 4.8539 27 1 -1.4041 -4.4696 4.9551 28 1 -0.7199 -2.5286 0.5187 29 1 0.0627 -1.4049 1.6548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334796529.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:09 Heat of formation + Delta-G solvation = 34.334464 kcal Electronic energy + Delta-G solvation = -14679.075374 eV Core-core repulsion = 12207.123335 eV Total energy + Delta-G solvation = -2471.952039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34969 -36.13622 -35.66544 -32.70017 -31.26641 -30.17102 -28.33535 -25.53320 -23.18188 -22.17322 -21.60509 -19.06080 -16.75373 -16.24598 -15.06191 -14.88248 -14.50319 -14.12755 -13.62534 -13.18176 -12.94947 -12.56752 -12.19685 -11.73260 -11.59850 -11.21160 -10.97812 -10.77670 -10.75565 -10.54132 -10.31160 -10.08026 -9.86594 -9.74998 -8.65352 -8.16356 -7.93401 -6.77545 -5.80696 -3.21544 1.59915 1.77799 2.71413 3.38129 3.45134 3.47233 4.06610 4.47923 5.15962 5.18009 5.32741 5.40421 5.48437 5.73283 5.77333 5.96292 6.07806 6.13602 6.31469 6.44273 6.61393 6.66484 6.81207 6.83575 7.01263 7.17639 7.33012 7.61293 7.77403 8.36674 9.16602 9.79428 10.37137 11.29365 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.009911 C = 0.007765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.035159 B = 2824.429506 C = 3605.213263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.140 3.860 11 C -0.098 4.098 12 C -0.057 4.057 13 C -0.125 4.125 14 C -0.129 4.129 15 C -0.123 4.123 16 C -0.039 4.039 17 Cl -0.071 7.071 18 C -0.070 4.070 19 C 0.204 3.796 20 H 0.256 0.744 21 H 0.062 0.938 22 H 0.027 0.973 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.045 0.955 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 -9.292 6.320 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.315 5.315 10 C 0.014 3.986 11 C -0.137 4.137 12 C -0.058 4.058 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.141 4.141 16 C -0.066 4.066 17 Cl -0.042 7.042 18 C -0.072 4.072 19 C 0.078 3.922 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.063 0.937 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.247 -8.991 6.294 10.978 hybrid contribution 0.227 0.901 0.178 0.946 sum -0.020 -8.090 6.472 10.360 Atomic orbital electron populations 1.69994 1.05145 1.25713 1.53861 1.25024 0.95394 0.98366 1.00781 0.86285 0.79101 0.83530 0.77753 1.21302 1.21477 1.20512 1.19131 0.92247 0.84202 1.42647 0.91243 1.43989 1.30004 1.01485 1.56043 1.20910 0.97635 0.87312 0.92785 1.21009 0.96528 0.99998 0.96179 1.19556 0.96137 0.93505 0.96577 1.21248 0.99099 0.98889 0.95103 1.20797 0.95917 0.98866 0.99173 1.20849 1.00065 0.94636 0.98598 1.20948 0.94212 0.93088 0.98342 1.98352 1.54430 1.53335 1.98105 1.20928 0.92237 0.97983 0.96088 1.19868 0.89125 0.94359 0.88820 0.93430 0.91897 0.95517 0.90886 0.91835 0.86416 0.86076 0.85825 0.93733 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.09 55.49 0.62 -25.51 15 2 C 0.00 0.08 5.00 -17.43 -0.09 0.00 15 3 Si 0.90 21.74 29.58 -169.99 -5.03 16.71 15 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 7 C -0.25 -6.94 9.70 -15.06 -0.15 -7.09 15 8 H 0.07 1.85 7.88 -52.49 -0.41 1.43 15 9 N -0.59 -15.05 2.97 -174.01 -0.52 -15.57 15 10 C 0.14 2.91 6.51 -3.80 -0.02 2.89 15 11 C -0.10 -1.73 5.87 -28.04 -0.16 -1.89 15 12 C -0.06 -1.07 5.76 -104.60 -0.60 -1.67 15 13 C -0.13 -1.94 9.59 -39.42 -0.38 -2.31 15 14 C -0.13 -1.86 10.04 -39.70 -0.40 -2.26 15 15 C -0.12 -1.94 9.82 -39.64 -0.39 -2.33 15 16 C -0.04 -0.73 6.31 -39.37 -0.25 -0.98 15 17 Cl -0.07 -1.33 27.45 -51.86 -1.42 -2.76 15 18 C -0.07 -1.47 5.82 -104.52 -0.61 -2.08 15 19 C 0.20 5.03 4.01 -5.04 -0.02 5.01 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.06 1.24 7.96 -51.93 -0.41 0.83 15 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.06 0.92 8.11 -51.93 -0.42 0.50 15 25 H 0.12 1.49 8.05 -52.49 -0.42 1.07 15 26 H 0.12 1.34 8.06 -52.48 -0.42 0.92 15 27 H 0.12 1.65 8.06 -52.49 -0.42 1.22 15 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 15 29 H 0.11 2.90 5.78 -51.93 -0.30 2.60 15 LS Contribution 257.47 15.07 3.88 3.88 Total: -1.00 -29.29 257.47 -8.76 -38.05 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.22 Total: -2.09 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.07 Total: -12.72 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.10 Total: -41.08 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -1.42 Total: -2.76 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.29 -8.76 -38.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334796529.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.387 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds