Wall clock time and date at job start Sun Mar 29 2020 22:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48506 * 109.46819 * 267.58744 * 3 2 1 5 5 H 1.48499 * 109.46917 * 27.58385 * 3 2 1 6 6 H 1.48493 * 109.47255 * 147.58833 * 3 2 1 7 7 C 1.38809 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99951 * 164.54689 * 7 2 1 9 9 N 1.36941 * 120.00118 * 344.54348 * 7 2 1 10 10 C 1.47140 * 121.37191 * 155.34578 * 9 7 2 11 11 C 1.52784 * 107.95415 * 115.63514 * 10 9 7 12 12 C 1.50606 * 110.82648 * 47.40300 * 11 10 9 13 13 C 1.38992 * 117.60597 * 160.38301 * 12 11 10 14 14 C 1.37915 * 120.61197 * 179.59484 * 13 12 11 15 15 C 1.38242 * 119.84506 * 359.94810 * 14 13 12 16 16 C 1.38082 * 119.69718 * 0.20606 * 15 14 13 17 17 Cl 1.73599 * 119.75754 * 179.97438 * 16 15 14 18 18 C 1.37649 * 122.87128 * 340.29346 * 12 11 10 19 19 C 1.46686 * 121.35610 * 335.32541 * 9 7 2 20 20 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.71915 * 356.03784 * 10 9 7 22 22 H 1.09002 * 109.77737 * 235.27282 * 10 9 7 23 23 H 1.09001 * 109.20311 * 287.07001 * 11 10 9 24 24 H 1.09001 * 109.19794 * 167.73224 * 11 10 9 25 25 H 1.07996 * 119.69438 * 359.58716 * 13 12 11 26 26 H 1.08003 * 120.07529 * 179.97438 * 14 13 12 27 27 H 1.07990 * 120.15248 * 180.22443 * 15 14 13 28 28 H 1.09003 * 109.43686 * 104.32928 * 19 9 7 29 29 H 1.08999 * 109.43566 * 344.44998 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5487 2.0169 -1.3989 5 1 1.4230 2.6668 0.6483 6 1 3.5213 1.4554 0.7504 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2192 -0.2487 9 7 1.3626 -2.3665 0.3171 10 6 1.8504 -3.6691 -0.1628 11 6 2.2708 -4.4919 1.0540 12 6 1.2119 -4.4452 2.1239 13 6 1.2307 -5.4417 3.0927 14 6 0.2951 -5.4539 4.1059 15 6 -0.6712 -4.4669 4.1619 16 6 -0.6949 -3.4773 3.1992 17 17 -1.9081 -2.2374 3.2677 18 6 0.2448 -3.4670 2.1757 19 6 0.1545 -2.3661 1.1490 20 1 -0.4850 0.8400 -0.0004 21 1 2.7061 -3.5215 -0.8216 22 1 1.0550 -4.1855 -0.7003 23 1 3.2021 -4.0906 1.4538 24 1 2.4278 -5.5269 0.7500 25 1 1.9849 -6.2135 3.0517 26 1 0.3175 -6.2326 4.8539 27 1 -1.4041 -4.4696 4.9551 28 1 -0.7199 -2.5286 0.5187 29 1 0.0627 -1.4049 1.6548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334796529.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:09 Heat of formation + Delta-G solvation = 18.149248 kcal Electronic energy + Delta-G solvation = -14679.777218 eV Core-core repulsion = 12207.123335 eV Total energy + Delta-G solvation = -2472.653883 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75754 -37.71894 -37.19149 -34.45459 -32.84068 -31.83144 -29.84204 -27.40338 -24.82270 -23.81318 -22.97583 -20.67538 -18.63119 -17.67445 -16.68009 -16.45145 -16.10518 -15.61620 -15.40784 -14.84967 -14.37150 -14.16730 -13.70693 -13.38155 -13.09954 -12.83095 -12.65646 -12.62271 -12.35004 -12.09950 -12.03308 -11.74997 -11.69139 -11.30059 -10.66963 -9.47018 -9.42908 -8.78407 -7.89444 -5.33310 0.29102 0.44354 1.31684 1.45329 1.47594 1.56628 2.49470 2.75347 3.27251 3.61120 3.86826 4.00812 4.15702 4.38958 4.42155 4.57170 4.68093 4.76775 4.90293 5.00579 5.11105 5.14034 5.36133 5.41394 5.43998 5.54312 5.60055 5.85413 6.03056 6.32191 7.09795 7.79673 8.34715 9.18768 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.009911 C = 0.007765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.035159 B = 2824.429506 C = 3605.213263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.133 3.867 11 C -0.088 4.088 12 C -0.074 4.074 13 C -0.116 4.116 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.056 4.056 17 Cl -0.085 7.085 18 C -0.109 4.109 19 C 0.223 3.777 20 H 0.250 0.750 21 H 0.069 0.931 22 H 0.022 0.978 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.158 0.842 26 H 0.169 0.831 27 H 0.151 0.849 28 H 0.003 0.997 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -11.707 8.005 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.093 0.907 9 N -0.337 5.337 10 C 0.008 3.992 11 C -0.126 4.126 12 C -0.074 4.074 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.138 4.138 16 C -0.083 4.083 17 Cl -0.057 7.057 18 C -0.111 4.111 19 C 0.098 3.902 20 H 0.059 0.941 21 H 0.087 0.913 22 H 0.041 0.959 23 H 0.092 0.908 24 H 0.122 0.878 25 H 0.175 0.825 26 H 0.186 0.814 27 H 0.168 0.832 28 H 0.021 0.979 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.285 -11.440 7.978 14.007 hybrid contribution -0.240 1.518 -0.319 1.570 sum 1.045 -9.922 7.659 12.578 Atomic orbital electron populations 1.70182 1.06603 1.25843 1.55422 1.25811 0.96142 1.01514 1.01229 0.85277 0.77949 0.79408 0.77801 1.20701 1.22085 1.19513 1.19504 0.92670 0.85380 1.41748 0.90749 1.44283 1.30095 1.02604 1.56762 1.21122 0.97521 0.85898 0.94701 1.20907 0.96049 1.01468 0.94224 1.19798 0.95711 0.93902 0.98020 1.21627 0.99827 0.98198 0.93743 1.21373 0.93820 0.98551 0.99087 1.21240 1.00939 0.93663 0.97973 1.21167 0.93956 0.93981 0.99169 1.98340 1.54902 1.54276 1.98145 1.20638 0.95273 0.98460 0.96737 1.19301 0.87607 0.94452 0.88879 0.94124 0.91299 0.95938 0.90808 0.87750 0.82486 0.81372 0.83175 0.97948 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 11.09 21.65 0.24 -56.59 15 2 C -0.05 -2.96 5.00 84.86 0.42 -2.53 15 3 Si 0.97 45.81 29.58 68.60 2.03 47.83 15 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 15 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 7 C -0.26 -14.80 9.70 84.03 0.81 -13.99 15 8 H 0.07 3.99 7.88 -2.91 -0.02 3.97 15 9 N -0.61 -32.15 2.97 -704.44 -2.09 -34.25 15 10 C 0.13 5.51 6.51 86.19 0.56 6.07 15 11 C -0.09 -2.89 5.87 29.75 0.17 -2.71 15 12 C -0.07 -2.60 5.76 -19.85 -0.11 -2.71 15 13 C -0.12 -3.01 9.59 22.37 0.21 -2.80 15 14 C -0.11 -2.58 10.04 22.19 0.22 -2.36 15 15 C -0.12 -3.39 9.82 22.23 0.22 -3.17 15 16 C -0.06 -2.09 6.31 22.40 0.14 -1.95 15 17 Cl -0.09 -3.31 27.45 -2.72 -0.07 -3.38 15 18 C -0.11 -4.61 5.82 -19.80 -0.12 -4.73 15 19 C 0.22 11.62 4.01 85.63 0.34 11.96 15 20 H 0.25 14.75 8.31 -92.71 -0.77 13.98 15 21 H 0.07 2.69 7.96 -2.39 -0.02 2.67 15 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 23 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 24 H 0.10 2.57 8.11 -2.39 -0.02 2.55 15 25 H 0.16 2.88 8.05 -2.91 -0.02 2.85 15 26 H 0.17 2.44 8.06 -2.91 -0.02 2.42 15 27 H 0.15 3.42 8.06 -2.92 -0.02 3.40 15 28 H 0.00 0.16 8.14 -2.39 -0.02 0.14 15 29 H 0.07 4.08 5.78 -2.39 -0.01 4.06 15 Total: -1.00 -67.15 257.47 4.13 -63.01 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 1.15 Total: 2.28 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 2.89 Total: -18.92 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -1.85 Total: -90.83 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.07 Total: -3.38 kcal Total: -67.15 4.13 -63.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334796529.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.162 kcal (2) G-P(sol) polarization free energy of solvation -67.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds