Wall clock time and date at job start Sun Mar 29 2020 22:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86799 * 120.00216 * 2 1 4 4 H 1.48496 * 109.47309 * 240.00431 * 3 2 1 5 5 H 1.48496 * 109.46796 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46977 * 120.00298 * 3 2 1 7 7 C 1.40051 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00103 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00136 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00240 * 179.97438 * 9 7 2 12 12 C 1.46498 * 120.00413 * 179.97438 * 11 9 7 13 13 C 1.53777 * 113.61922 * 155.00287 * 12 11 9 14 14 C 1.53778 * 87.08479 * 89.11495 * 13 12 11 15 15 C 1.52997 * 113.61679 * 139.98340 * 14 13 12 16 16 F 1.39905 * 109.47157 * 61.52895 * 15 14 13 17 17 F 1.39900 * 109.47010 * 301.53286 * 15 14 13 18 18 F 1.39897 * 109.47422 * 181.52978 * 15 14 13 19 19 C 1.53783 * 87.17189 * 25.39160 * 14 13 12 20 20 H 0.96997 * 120.00232 * 359.97438 * 1 2 3 21 21 H 0.97006 * 119.99722 * 359.97438 * 11 9 7 22 22 H 1.08998 * 112.90893 * 23.74734 * 12 11 9 23 23 H 1.09006 * 113.61080 * 334.56445 * 13 12 11 24 24 H 1.08997 * 113.61849 * 203.66936 * 13 12 11 25 25 H 1.09007 * 113.61285 * 270.80692 * 14 13 12 26 26 H 1.09000 * 113.61048 * 89.16040 * 19 14 13 27 27 H 1.09003 * 113.61260 * 220.06009 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9488 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0010 13 6 2.0135 -6.0884 -0.5976 14 6 2.5549 -6.3390 0.8198 15 6 2.6562 -7.8215 1.1839 16 9 3.5447 -8.4569 0.3098 17 9 1.3937 -8.4150 1.0781 18 9 3.1226 -7.9485 2.4967 19 6 1.2782 -5.6614 1.3449 20 1 -0.4850 0.8400 0.0004 21 1 2.9189 -3.6477 -0.0027 22 1 0.2079 -4.8243 -0.4041 23 1 2.7791 -5.7784 -1.3090 24 1 1.3863 -6.8961 -0.9746 25 1 3.4667 -5.7850 1.0432 26 1 0.4495 -6.3523 1.5000 27 1 1.4509 -5.0073 2.1996 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336099015.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:27 Heat of formation + Delta-G solvation = -181.234141 kcal Electronic energy + Delta-G solvation = -16859.567064 eV Core-core repulsion = 13395.701364 eV Total energy + Delta-G solvation = -3463.865700 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.03106 -47.53740 -47.51715 -39.18140 -36.47611 -32.65490 -31.64554 -27.84933 -26.07587 -25.63611 -22.82249 -20.56788 -18.95306 -18.42164 -18.29137 -17.58016 -16.96589 -15.39281 -15.29008 -14.45834 -14.40190 -14.15216 -13.97216 -13.77610 -13.70704 -13.67215 -13.11836 -12.79145 -12.38002 -12.34581 -11.71664 -11.35714 -11.03105 -10.94452 -10.53039 -10.39859 -10.31099 -10.11115 -8.90238 -7.72149 -7.65364 -6.24688 -4.71223 2.85284 3.12675 3.17969 3.19588 3.90346 3.90586 4.04317 4.11011 4.48800 4.55904 4.76588 4.82830 5.12947 5.18842 5.73516 5.78777 5.84007 6.07141 6.12344 6.22638 6.48863 7.37658 7.82197 7.99732 8.24899 8.96263 9.42596 10.52856 10.70662 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.055528 B = 0.005265 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.127480 B = 5316.535675 C = 5484.091993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.749 5.749 12 C 0.147 3.853 13 C -0.138 4.138 14 C -0.164 4.164 15 C 0.458 3.542 16 F -0.188 7.188 17 F -0.183 7.183 18 F -0.188 7.188 19 C -0.146 4.146 20 H 0.270 0.730 21 H 0.381 0.619 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -11.665 1.168 13.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.460 6.460 11 N -0.402 5.402 12 C 0.039 3.961 13 C -0.176 4.176 14 C -0.184 4.184 15 C 0.404 3.596 16 F -0.169 7.169 17 F -0.165 7.165 18 F -0.169 7.169 19 C -0.186 4.186 20 H 0.081 0.919 21 H 0.213 0.787 22 H 0.119 0.881 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.147 0.853 26 H 0.111 0.889 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.140 -11.562 1.168 12.707 hybrid contribution 1.114 0.386 0.182 1.193 sum 6.255 -11.176 1.350 12.878 Atomic orbital electron populations 1.70000 1.07070 1.27521 1.34891 1.25706 0.94635 1.00328 0.92580 0.86412 0.79806 0.80952 0.79461 1.19263 1.20535 1.19274 1.20835 0.93580 0.89298 1.54497 0.91404 1.18256 0.87264 0.82311 0.76237 1.90606 1.14036 1.86608 1.54738 1.45957 1.08305 1.04105 1.81878 1.21272 0.97710 0.84060 0.93098 1.23406 1.00598 1.00038 0.93562 1.24114 1.03776 0.88480 1.02010 1.20650 0.73162 0.91672 0.74151 1.93160 1.69301 1.84807 1.69649 1.93142 1.41342 1.86190 1.95797 1.93163 1.88790 1.96896 1.38059 1.23642 0.94194 0.99463 1.01256 0.91947 0.78714 0.88076 0.89724 0.88698 0.85274 0.88859 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.52 11.83 55.55 0.66 -21.86 15 2 C 0.09 2.39 5.50 -17.37 -0.10 2.29 15 3 Si 0.91 19.67 29.56 -169.99 -5.02 14.64 15 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 15 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 7 C -0.55 -14.90 9.54 -35.63 -0.34 -15.24 15 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 15 9 C 0.55 15.14 7.75 -12.99 -0.10 15.04 15 10 O -0.58 -18.10 14.62 5.20 0.08 -18.02 15 11 N -0.75 -15.55 5.26 -54.34 -0.29 -15.84 15 12 C 0.15 2.58 4.33 -67.03 -0.29 2.29 15 13 C -0.14 -1.82 7.20 -25.92 -0.19 -2.00 15 14 C -0.16 -2.09 3.67 -89.81 -0.33 -2.42 15 15 C 0.46 5.81 3.01 37.16 0.11 5.92 15 16 F -0.19 -2.39 17.20 2.25 0.04 -2.35 15 17 F -0.18 -2.41 15.74 2.25 0.04 -2.38 15 18 F -0.19 -2.49 17.32 2.25 0.04 -2.45 15 19 C -0.15 -2.20 7.33 -25.82 -0.19 -2.39 15 20 H 0.27 7.21 8.29 -40.82 -0.34 6.87 15 21 H 0.38 6.85 8.68 -40.82 -0.35 6.50 15 22 H 0.10 2.02 7.46 -51.93 -0.39 1.64 15 23 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 24 H 0.09 1.14 7.83 -51.93 -0.41 0.73 15 25 H 0.13 1.52 8.14 -51.93 -0.42 1.09 15 26 H 0.09 1.31 7.18 -51.93 -0.37 0.93 15 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 15 LS Contribution 252.89 15.07 3.81 3.81 Total: -1.00 -31.96 252.89 -4.41 -36.37 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.34 Total: 4.60 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.42 Total: 3.49 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.37 Total: -37.70 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.08 Total: -18.02 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.11 Total: -7.19 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.96 -4.41 -36.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336099015.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.868 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds