Wall clock time and date at job start Sun Mar 29 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86794 * 120.00531 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00308 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99874 * 3 2 1 7 7 C 1.39014 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.36878 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00255 * 179.97438 * 9 7 2 11 11 O 1.21753 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.46457 * 120.00644 * 180.27332 * 10 9 7 13 13 S 1.75831 * 125.45999 * 359.42605 * 12 10 9 14 14 C 1.70606 * 91.56967 * 179.91131 * 13 12 10 15 15 C 1.33852 * 110.97093 * 0.35253 * 14 13 12 16 16 C 1.36764 * 125.46622 * 179.72257 * 12 10 9 17 17 C 1.50706 * 123.36272 * 0.04424 * 16 12 10 18 18 C 1.52993 * 117.49944 * 188.73951 * 17 16 12 19 19 C 1.52998 * 117.50090 * 120.07809 * 17 16 12 20 20 H 0.97005 * 119.99584 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00374 * 0.02562 * 9 7 2 22 22 H 1.07995 * 124.51906 * 180.02562 * 14 13 12 23 23 H 1.08002 * 122.44920 * 179.70667 * 15 14 13 24 24 H 1.08999 * 115.54471 * 334.41598 * 17 16 12 25 25 H 1.09001 * 117.50319 * 0.02562 * 18 17 16 26 26 H 1.09005 * 117.49289 * 145.01731 * 18 17 16 27 27 H 1.08999 * 117.50244 * 214.98244 * 19 17 16 28 28 H 1.09009 * 117.49980 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4955 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4400 0.7001 7 6 2.0090 -1.2039 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3245 -2.3893 -0.0005 10 6 1.9982 -3.5565 -0.0016 11 8 3.2157 -3.5566 -0.0021 12 6 1.2659 -4.8249 -0.0076 13 16 -0.4844 -4.9922 0.0004 14 6 -0.3687 -6.6943 -0.0162 15 6 0.9108 -7.0874 -0.0192 16 6 1.8338 -6.0690 -0.0146 17 6 3.3230 -6.3003 -0.0161 18 6 3.8151 -7.7330 -0.2304 19 6 3.9168 -7.0874 1.1538 20 1 -0.4850 0.8401 0.0004 21 1 0.3545 -2.3893 -0.0005 22 1 -1.2150 -7.3652 -0.0183 23 1 1.1970 -8.1288 -0.0246 24 1 3.9235 -5.4936 -0.4364 25 1 3.0619 -8.5083 -0.3707 26 1 4.7397 -7.8688 -0.7915 27 1 4.9083 -6.7988 1.5029 28 1 3.2304 -7.4383 1.9244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336365112.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:35 Heat of formation + Delta-G solvation = 15.135589 kcal Electronic energy + Delta-G solvation = -14128.344227 eV Core-core repulsion = 11657.603369 eV Total energy + Delta-G solvation = -2470.740858 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.02501 -37.55013 -35.20615 -34.04962 -31.41238 -29.34234 -25.74272 -24.00677 -22.14934 -21.67281 -20.48932 -18.48261 -17.31649 -17.20883 -15.89260 -15.08010 -14.38422 -14.23254 -13.91989 -13.75390 -13.37877 -12.56096 -12.37601 -12.01636 -11.60902 -11.42451 -11.20480 -11.16273 -10.55541 -10.46957 -10.32986 -10.25583 -9.92258 -9.66228 -8.46490 -8.27300 -8.09858 -7.90730 -6.59127 -3.91456 1.08127 2.02244 2.40997 2.80776 3.15212 3.20030 3.26081 4.06294 4.14404 4.39690 4.89596 5.06445 5.22432 5.22723 5.32998 5.45866 5.66270 5.85519 5.92785 6.10233 6.16812 6.36051 6.40732 6.55450 6.78356 7.04392 7.39787 7.91646 8.45281 9.01393 9.35995 9.91121 10.57516 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.032382 B = 0.007332 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.462028 B = 3817.710898 C = 4603.971544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.023 3.977 3 Si 0.936 3.064 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.292 4.292 8 H 0.110 0.890 9 N -0.543 5.543 10 C 0.496 3.504 11 O -0.582 6.582 12 C -0.204 4.204 13 S 0.178 5.822 14 C -0.265 4.265 15 C -0.135 4.135 16 C -0.042 4.042 17 C -0.081 4.081 18 C -0.186 4.186 19 C -0.169 4.169 20 H 0.277 0.723 21 H 0.392 0.608 22 H 0.159 0.841 23 H 0.134 0.866 24 H 0.138 0.862 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 -10.917 0.244 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.422 4.422 8 H 0.128 0.872 9 N -0.176 5.176 10 C 0.283 3.717 11 O -0.470 6.470 12 C -0.325 4.325 13 S 0.445 5.555 14 C -0.402 4.402 15 C -0.166 4.166 16 C -0.056 4.056 17 C -0.101 4.101 18 C -0.224 4.224 19 C -0.206 4.206 20 H 0.087 0.913 21 H 0.226 0.774 22 H 0.177 0.823 23 H 0.152 0.848 24 H 0.155 0.845 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.699 -9.690 0.265 9.841 hybrid contribution 0.720 -0.373 0.000 0.811 sum -0.979 -10.063 0.265 10.114 Atomic orbital electron populations 1.69615 1.06166 1.28846 1.47994 1.25412 0.95721 1.00170 0.96750 0.85753 0.79296 0.80075 0.78629 1.20107 1.20673 1.19102 1.19851 0.93789 0.81955 1.46634 0.87197 1.41884 1.09226 1.04769 1.61758 1.16510 0.87146 0.81775 0.86241 1.90593 1.12481 1.86015 1.57893 1.24905 0.95827 0.98542 1.13213 1.83182 1.03726 0.99681 1.68896 1.24971 1.01218 1.00859 1.13195 1.19728 0.91583 1.00106 1.05228 1.18494 0.94776 0.90445 1.01844 1.20898 0.91381 0.95043 1.02813 1.23026 1.02836 0.96351 1.00143 1.22896 1.02180 1.04107 0.91461 0.91329 0.77379 0.82336 0.84848 0.84477 0.89149 0.88894 0.88762 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.66 13.05 55.50 0.72 -22.93 15 2 C 0.02 0.61 5.50 -17.45 -0.10 0.52 15 3 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 15 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 15 7 C -0.29 -8.09 9.68 -15.01 -0.15 -8.24 15 8 H 0.11 3.14 7.15 -52.49 -0.38 2.76 15 9 N -0.54 -14.23 5.27 -12.23 -0.06 -14.29 15 10 C 0.50 12.55 7.72 -12.95 -0.10 12.45 15 11 O -0.58 -16.05 13.87 5.14 0.07 -15.98 15 12 C -0.20 -4.29 6.45 -36.81 -0.24 -4.53 15 13 S 0.18 3.04 22.15 -107.50 -2.38 0.65 15 14 C -0.26 -3.87 10.92 29.19 0.32 -3.55 15 15 C -0.13 -2.09 9.46 -41.41 -0.39 -2.48 15 16 C -0.04 -0.78 5.61 -105.44 -0.59 -1.37 15 17 C -0.08 -1.46 5.44 -91.77 -0.50 -1.96 15 18 C -0.19 -2.54 9.95 -26.70 -0.27 -2.81 15 19 C -0.17 -2.51 10.22 -26.70 -0.27 -2.79 15 20 H 0.28 6.90 8.31 -40.82 -0.34 6.56 15 21 H 0.39 9.88 7.00 -40.82 -0.29 9.60 15 22 H 0.16 1.80 8.06 -52.49 -0.42 1.38 15 23 H 0.13 1.72 6.61 -52.49 -0.35 1.37 15 24 H 0.14 2.86 6.17 -51.93 -0.32 2.54 15 25 H 0.09 1.10 6.56 -51.93 -0.34 0.76 15 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 28 H 0.09 1.27 8.14 -51.92 -0.42 0.84 15 LS Contribution 260.46 15.07 3.93 3.93 Total: -1.00 -29.54 260.46 -7.52 -37.07 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -2.49 Total: 10.89 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -2.28 Total: -14.76 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.66 Total: -37.23 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.07 Total: -15.98 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -2.38 Total: 0.65 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.54 -7.52 -37.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336365112.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.203 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds