Wall clock time and date at job start Sun Mar 29 2020 22:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86794 * 120.00531 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00308 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99874 * 3 2 1 7 7 C 1.39014 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.36878 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00255 * 179.97438 * 9 7 2 11 11 O 1.21753 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.46457 * 120.00644 * 180.27332 * 10 9 7 13 13 S 1.75831 * 125.45999 * 359.42605 * 12 10 9 14 14 C 1.70606 * 91.56967 * 179.91131 * 13 12 10 15 15 C 1.33852 * 110.97093 * 0.35253 * 14 13 12 16 16 C 1.36764 * 125.46622 * 179.72257 * 12 10 9 17 17 C 1.50706 * 123.36272 * 0.04424 * 16 12 10 18 18 C 1.52993 * 117.49944 * 188.73951 * 17 16 12 19 19 C 1.52998 * 117.50090 * 120.07809 * 17 16 12 20 20 H 0.97005 * 119.99584 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00374 * 0.02562 * 9 7 2 22 22 H 1.07995 * 124.51906 * 180.02562 * 14 13 12 23 23 H 1.08002 * 122.44920 * 179.70667 * 15 14 13 24 24 H 1.08999 * 115.54471 * 334.41598 * 17 16 12 25 25 H 1.09001 * 117.50319 * 0.02562 * 18 17 16 26 26 H 1.09005 * 117.49289 * 145.01731 * 18 17 16 27 27 H 1.08999 * 117.50244 * 214.98244 * 19 17 16 28 28 H 1.09009 * 117.49980 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4955 2.0463 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4400 0.7001 7 6 2.0090 -1.2039 -0.0005 8 1 3.0889 -1.2039 -0.0010 9 7 1.3245 -2.3893 -0.0005 10 6 1.9982 -3.5565 -0.0016 11 8 3.2157 -3.5566 -0.0021 12 6 1.2659 -4.8249 -0.0076 13 16 -0.4844 -4.9922 0.0004 14 6 -0.3687 -6.6943 -0.0162 15 6 0.9108 -7.0874 -0.0192 16 6 1.8338 -6.0690 -0.0146 17 6 3.3230 -6.3003 -0.0161 18 6 3.8151 -7.7330 -0.2304 19 6 3.9168 -7.0874 1.1538 20 1 -0.4850 0.8401 0.0004 21 1 0.3545 -2.3893 -0.0005 22 1 -1.2150 -7.3652 -0.0183 23 1 1.1970 -8.1288 -0.0246 24 1 3.9235 -5.4936 -0.4364 25 1 3.0619 -8.5083 -0.3707 26 1 4.7397 -7.8688 -0.7915 27 1 4.9083 -6.7988 1.5029 28 1 3.2304 -7.4383 1.9244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336365112.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:35 Heat of formation + Delta-G solvation = -3.651514 kcal Electronic energy + Delta-G solvation = -14129.158897 eV Core-core repulsion = 11657.603369 eV Total energy + Delta-G solvation = -2471.555528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.62019 -39.23933 -36.47293 -36.05340 -33.41576 -30.81763 -27.52662 -25.60879 -23.31103 -22.93581 -22.19574 -20.41806 -19.05169 -18.62022 -17.24084 -16.92671 -16.06753 -15.77867 -15.67781 -15.41122 -14.54813 -14.34882 -13.87970 -13.64140 -13.19621 -12.96208 -12.73892 -12.50652 -12.33048 -12.12611 -11.81232 -11.62092 -11.49109 -11.19876 -10.41615 -10.15940 -9.64012 -9.25509 -8.56701 -6.02389 -0.32830 0.62366 1.08891 1.35570 1.39642 1.53071 1.54978 2.25147 2.32181 3.10282 3.11916 3.22556 3.80992 3.99163 4.14963 4.27969 4.32125 4.51243 4.66373 4.79705 4.93898 5.14259 5.17007 5.28270 5.31925 5.47245 5.61184 5.92982 6.46363 6.99490 7.38544 7.94529 8.61064 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.032382 B = 0.007332 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.462028 B = 3817.710898 C = 4603.971544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.011 4.011 3 Si 1.002 2.998 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.498 3.502 11 O -0.618 6.618 12 C -0.277 4.277 13 S 0.186 5.814 14 C -0.222 4.222 15 C -0.148 4.148 16 C -0.016 4.016 17 C -0.131 4.131 18 C -0.148 4.148 19 C -0.162 4.162 20 H 0.283 0.717 21 H 0.394 0.606 22 H 0.207 0.793 23 H 0.173 0.827 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -13.649 0.335 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.212 4.212 3 Si 0.824 3.176 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.193 5.193 10 C 0.287 3.713 11 O -0.507 6.507 12 C -0.397 4.397 13 S 0.454 5.546 14 C -0.359 4.359 15 C -0.179 4.179 16 C -0.031 4.031 17 C -0.152 4.152 18 C -0.185 4.185 19 C -0.200 4.200 20 H 0.093 0.907 21 H 0.228 0.772 22 H 0.224 0.776 23 H 0.191 0.809 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.751 -12.424 0.353 12.730 hybrid contribution 1.033 0.174 -0.032 1.049 sum -1.718 -12.249 0.321 12.374 Atomic orbital electron populations 1.69673 1.07108 1.29934 1.48574 1.26220 0.96636 1.02766 0.95569 0.84809 0.77882 0.76014 0.78911 1.19296 1.19089 1.19491 1.19791 0.93097 0.83582 1.50144 0.89596 1.41865 1.09137 1.04821 1.63510 1.17212 0.87096 0.83070 0.83886 1.90546 1.14316 1.87189 1.58691 1.24550 0.98406 0.97283 1.19486 1.83144 1.00596 1.02154 1.68667 1.25588 1.02497 0.99600 1.08232 1.19984 0.90993 1.01026 1.05886 1.18959 0.95786 0.90514 0.97881 1.20812 0.90958 0.96795 1.06604 1.23171 1.03561 0.93338 0.98413 1.22995 1.02176 1.02791 0.91989 0.90737 0.77210 0.77649 0.80930 0.88746 0.86322 0.87460 0.88582 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.05 13.05 21.68 0.28 -49.76 15 2 C -0.01 -0.59 5.50 84.94 0.47 -0.13 15 3 Si 1.00 43.09 29.55 68.60 2.03 45.11 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 7 C -0.34 -19.84 9.68 84.09 0.81 -19.03 15 8 H 0.09 5.32 7.15 -2.91 -0.02 5.30 15 9 N -0.56 -31.17 5.27 -310.81 -1.64 -32.80 15 10 C 0.50 26.80 7.72 86.38 0.67 27.47 15 11 O -0.62 -36.64 13.87 -4.52 -0.06 -36.70 15 12 C -0.28 -11.89 6.45 24.07 0.16 -11.73 15 13 S 0.19 6.13 22.15 -56.49 -1.25 4.88 15 14 C -0.22 -5.43 10.92 66.82 0.73 -4.70 15 15 C -0.15 -3.95 9.46 21.08 0.20 -3.75 15 16 C -0.02 -0.58 5.61 -20.40 -0.11 -0.69 15 17 C -0.13 -4.65 5.44 -11.54 -0.06 -4.71 15 18 C -0.15 -3.53 9.95 30.62 0.30 -3.23 15 19 C -0.16 -4.50 10.22 30.62 0.31 -4.18 15 20 H 0.28 14.29 8.31 -92.70 -0.77 13.52 15 21 H 0.39 20.99 7.00 -92.71 -0.65 20.34 15 22 H 0.21 3.18 8.06 -2.91 -0.02 3.16 15 23 H 0.17 3.28 6.61 -2.91 -0.02 3.27 15 24 H 0.09 4.18 6.17 -2.39 -0.01 4.16 15 25 H 0.12 2.19 6.56 -2.39 -0.02 2.17 15 26 H 0.11 2.27 8.14 -2.38 -0.02 2.25 15 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 15 28 H 0.10 2.57 8.14 -2.38 -0.02 2.55 15 Total: -1.00 -69.42 260.46 3.38 -66.04 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.55 Total: 27.92 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.47 Total: -24.68 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.36 Total: -82.57 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.06 Total: -36.70 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.25 Total: 4.88 kcal Total: -69.42 3.38 -66.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336365112.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.386 kcal (2) G-P(sol) polarization free energy of solvation -69.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds