Wall clock time and date at job start Sun Mar 29 2020 21:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35319 * 125.86417 * 2 1 4 4 C 1.35350 * 106.16996 * 180.11605 * 3 2 1 5 5 C 1.50702 * 126.74852 * 179.85130 * 4 3 2 6 6 N 1.46904 * 109.47127 * 94.71068 * 5 4 3 7 7 C 1.46901 * 110.99790 * 185.65378 * 6 5 4 8 8 C 1.53008 * 109.46725 * 182.95434 * 7 6 5 9 9 C 1.50704 * 115.54756 * 294.72891 * 8 7 6 10 10 H 1.07998 * 119.99722 * 92.76679 * 9 8 7 11 11 C 1.37879 * 119.99841 * 272.76326 * 9 8 7 12 12 N 1.31516 * 119.99584 * 183.79652 * 11 9 8 13 13 Si 1.86796 * 119.99985 * 3.79427 * 11 9 8 14 14 H 1.48502 * 109.47370 * 267.18637 * 13 11 9 15 15 H 1.48497 * 109.47205 * 27.18947 * 13 11 9 16 16 H 1.48502 * 109.46779 * 147.18797 * 13 11 9 17 17 C 1.52992 * 117.49746 * 80.40072 * 8 7 6 18 18 C 1.52997 * 117.49591 * 149.05871 * 8 7 6 19 19 N 1.33770 * 106.49806 * 359.58994 * 4 3 2 20 20 N 1.28631 * 108.88662 * 0.26201 * 19 4 3 21 21 H 1.08991 * 109.47179 * 270.32779 * 1 2 3 22 22 H 1.08996 * 109.46917 * 30.33530 * 1 2 3 23 23 H 1.08997 * 109.46574 * 150.32798 * 1 2 3 24 24 H 1.07993 * 126.91451 * 359.96470 * 3 2 1 25 25 H 1.09000 * 109.46964 * 334.71434 * 5 4 3 26 26 H 1.09001 * 109.47346 * 214.70922 * 5 4 3 27 27 H 1.00895 * 111.00139 * 61.69625 * 6 5 4 28 28 H 1.08997 * 109.47202 * 62.95524 * 7 6 5 29 29 H 1.08997 * 109.47339 * 302.95012 * 7 6 5 30 30 H 0.97001 * 119.99457 * 180.02562 * 12 11 9 31 31 H 1.09007 * 117.49945 * 214.99818 * 17 8 7 32 32 H 1.09000 * 117.50147 * 0.02562 * 17 8 7 33 33 H 1.08997 * 117.50216 * 359.97438 * 18 8 7 34 34 H 1.09004 * 117.49436 * 144.97164 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5322 0.6405 -0.0026 5 6 4.7880 1.4736 -0.0068 6 7 5.2624 1.6512 1.3721 7 6 6.4085 2.5689 1.4204 8 6 6.9197 2.6711 2.8589 9 6 5.9668 3.2975 3.8443 10 1 5.2964 2.6746 4.4177 11 6 5.9511 4.6658 4.0136 12 7 5.1734 5.2065 4.9260 13 14 7.0343 5.7514 2.9471 14 1 8.3276 5.9903 3.6368 15 1 7.2835 5.0777 1.6474 16 1 6.3530 7.0492 2.7093 17 6 7.8255 1.5483 3.3681 18 6 8.4144 2.9274 3.0609 19 7 3.4576 -0.6951 0.0051 20 7 2.2192 -1.0430 0.0065 21 1 -0.3633 0.0059 1.0276 22 1 -0.3633 0.8869 -0.5190 23 1 -0.3632 -0.8929 -0.5087 24 1 1.9381 2.1282 -0.0005 25 1 4.5760 2.4482 -0.4465 26 1 5.5563 0.9697 -0.5933 27 1 5.4922 0.7633 1.7927 28 1 6.0993 3.5549 1.0737 29 1 7.2040 2.1909 0.7782 30 1 5.1621 6.1691 5.0449 31 1 7.7325 1.2626 4.4160 32 1 8.0578 0.7370 2.6783 33 1 9.0338 3.0227 2.1691 34 1 8.7087 3.5494 3.9063 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336736618.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:30 Heat of formation + Delta-G solvation = 132.311931 kcal Electronic energy + Delta-G solvation = -16335.708110 eV Core-core repulsion = 13693.140036 eV Total energy + Delta-G solvation = -2642.568074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.08406 -37.42548 -35.25781 -34.04066 -31.94935 -31.01863 -28.11066 -26.83843 -25.38359 -23.30384 -21.95086 -21.55238 -20.83513 -18.88088 -17.14434 -16.53031 -16.33339 -15.30145 -14.79480 -14.51747 -14.18652 -13.65659 -13.61517 -13.22815 -13.12290 -12.63178 -12.22741 -12.05456 -11.69982 -11.31437 -11.01900 -10.68486 -10.48254 -10.40893 -10.03284 -9.95613 -9.53734 -9.07746 -8.95103 -8.45284 -8.40945 -7.66227 -5.97900 -3.96681 1.71111 2.41878 2.67771 3.35186 3.43941 3.47988 4.33310 4.52057 4.58919 4.77116 4.81440 5.06502 5.09236 5.21350 5.26213 5.31239 5.60703 5.80266 5.87501 6.07494 6.12260 6.23031 6.26294 6.31900 6.50437 6.54411 6.64341 6.80110 7.13570 7.24138 7.75257 7.84749 8.07249 8.63793 8.65974 9.08208 9.65908 11.14873 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.006120 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.018023 B = 4574.009592 C = 4990.762493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.300 5.300 3 C -0.030 4.030 4 C -0.006 4.006 5 C 0.143 3.857 6 N -0.663 5.663 7 C 0.099 3.901 8 C 0.005 3.995 9 C -0.461 4.461 10 H 0.077 0.923 11 C 0.073 3.927 12 N -0.905 5.905 13 Si 0.879 3.121 14 H -0.282 1.282 15 H -0.259 1.259 16 H -0.296 1.296 17 C -0.184 4.184 18 C -0.201 4.201 19 N -0.266 5.266 20 N -0.096 5.096 21 H 0.090 0.910 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.191 0.809 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.342 0.658 28 H 0.070 0.930 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -6.004 -11.761 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.093 5.093 3 C -0.182 4.182 4 C -0.144 4.144 5 C 0.012 3.988 6 N -0.294 5.294 7 C -0.029 4.029 8 C 0.003 3.997 9 C -0.498 4.498 10 H 0.095 0.905 11 C -0.128 4.128 12 N -0.543 5.543 13 Si 0.708 3.292 14 H -0.208 1.208 15 H -0.184 1.184 16 H -0.223 1.223 17 C -0.221 4.221 18 C -0.239 4.239 19 N -0.134 5.134 20 N -0.075 5.075 21 H 0.109 0.891 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.208 0.792 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.160 0.840 28 H 0.088 0.912 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.055 -6.882 -11.533 15.171 hybrid contribution 0.972 1.396 -0.774 1.868 sum -6.084 -5.486 -12.307 14.784 Atomic orbital electron populations 1.22209 0.73079 1.05492 1.05002 1.47179 1.09213 1.05106 1.47848 1.23412 0.90875 0.94584 1.09285 1.21944 0.95564 0.90944 1.05985 1.20086 0.90124 0.96679 0.91942 1.60232 1.37664 1.16804 1.14702 1.21767 0.89128 0.95846 0.96194 1.19446 0.88688 0.98311 0.93207 1.20158 1.18633 0.91665 1.19360 0.90493 1.24938 0.95278 0.97839 0.94730 1.69908 1.39801 1.11267 1.33337 0.86870 0.80499 0.79603 0.82276 1.20822 1.18386 1.22317 1.22808 1.07454 0.90832 1.01030 1.22978 0.98878 1.00230 1.01824 1.75000 1.09411 1.12423 1.16548 1.78228 0.96532 1.12244 1.20508 0.89106 0.88437 0.88368 0.79161 0.89676 0.94270 0.84032 0.91154 0.97744 0.92895 0.89570 0.91305 0.91200 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 11.39 59.85 0.68 1.24 16 2 N -0.30 -3.75 3.74 -68.06 -0.25 -4.01 16 3 C -0.03 -0.40 11.55 -17.04 -0.20 -0.60 16 4 C -0.01 -0.10 6.81 -82.78 -0.56 -0.66 16 5 C 0.14 2.27 6.25 -4.97 -0.03 2.24 16 6 N -0.66 -12.79 6.39 -115.05 -0.73 -13.52 16 7 C 0.10 2.04 5.11 -3.82 -0.02 2.02 16 8 C 0.00 0.11 0.92 -155.66 -0.14 -0.03 16 9 C -0.46 -12.83 9.32 -34.44 -0.32 -13.16 16 10 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 11 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 13 Si 0.88 21.60 24.97 -169.99 -4.25 17.35 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.26 -5.95 5.65 56.52 0.32 -5.63 16 16 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 17 C -0.18 -3.80 9.96 -26.70 -0.27 -4.06 16 18 C -0.20 -4.31 7.67 -26.70 -0.20 -4.51 16 19 N -0.27 -4.68 12.41 33.29 0.41 -4.27 16 20 N -0.10 -1.53 13.16 60.35 0.79 -0.73 16 21 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 25 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.34 6.68 8.75 -39.29 -0.34 6.34 16 28 H 0.07 1.51 6.50 -51.93 -0.34 1.18 16 29 H 0.00 0.09 8.09 -51.93 -0.42 -0.34 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.98 7.38 -51.93 -0.38 1.59 16 LS Contribution 289.19 15.07 4.36 4.36 Total: -1.00 -33.56 289.19 -4.99 -38.54 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.93 Total: 4.70 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.16 Total: -15.55 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.99 Total: -49.41 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.25 Total: 17.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.56 -4.99 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336736618.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.856 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds