Wall clock time and date at job start Sun Mar 29 2020 21:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35319 * 125.86417 * 2 1 4 4 C 1.35350 * 106.16996 * 180.11605 * 3 2 1 5 5 C 1.50702 * 126.74852 * 179.85130 * 4 3 2 6 6 N 1.46904 * 109.47127 * 94.71068 * 5 4 3 7 7 C 1.46901 * 110.99790 * 185.65378 * 6 5 4 8 8 C 1.53008 * 109.46725 * 182.95434 * 7 6 5 9 9 C 1.50704 * 115.54756 * 294.72891 * 8 7 6 10 10 H 1.07998 * 119.99722 * 92.76679 * 9 8 7 11 11 C 1.37879 * 119.99841 * 272.76326 * 9 8 7 12 12 N 1.31516 * 119.99584 * 183.79652 * 11 9 8 13 13 Si 1.86796 * 119.99985 * 3.79427 * 11 9 8 14 14 H 1.48502 * 109.47370 * 267.18637 * 13 11 9 15 15 H 1.48497 * 109.47205 * 27.18947 * 13 11 9 16 16 H 1.48502 * 109.46779 * 147.18797 * 13 11 9 17 17 C 1.52992 * 117.49746 * 80.40072 * 8 7 6 18 18 C 1.52997 * 117.49591 * 149.05871 * 8 7 6 19 19 N 1.33770 * 106.49806 * 359.58994 * 4 3 2 20 20 N 1.28631 * 108.88662 * 0.26201 * 19 4 3 21 21 H 1.08991 * 109.47179 * 270.32779 * 1 2 3 22 22 H 1.08996 * 109.46917 * 30.33530 * 1 2 3 23 23 H 1.08997 * 109.46574 * 150.32798 * 1 2 3 24 24 H 1.07993 * 126.91451 * 359.96470 * 3 2 1 25 25 H 1.09000 * 109.46964 * 334.71434 * 5 4 3 26 26 H 1.09001 * 109.47346 * 214.70922 * 5 4 3 27 27 H 1.00895 * 111.00139 * 61.69625 * 6 5 4 28 28 H 1.08997 * 109.47202 * 62.95524 * 7 6 5 29 29 H 1.08997 * 109.47339 * 302.95012 * 7 6 5 30 30 H 0.97001 * 119.99457 * 180.02562 * 12 11 9 31 31 H 1.09007 * 117.49945 * 214.99818 * 17 8 7 32 32 H 1.09000 * 117.50147 * 0.02562 * 17 8 7 33 33 H 1.08997 * 117.50216 * 359.97438 * 18 8 7 34 34 H 1.09004 * 117.49436 * 144.97164 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5322 0.6405 -0.0026 5 6 4.7880 1.4736 -0.0068 6 7 5.2624 1.6512 1.3721 7 6 6.4085 2.5689 1.4204 8 6 6.9197 2.6711 2.8589 9 6 5.9668 3.2975 3.8443 10 1 5.2964 2.6746 4.4177 11 6 5.9511 4.6658 4.0136 12 7 5.1734 5.2065 4.9260 13 14 7.0343 5.7514 2.9471 14 1 8.3276 5.9903 3.6368 15 1 7.2835 5.0777 1.6474 16 1 6.3530 7.0492 2.7093 17 6 7.8255 1.5483 3.3681 18 6 8.4144 2.9274 3.0609 19 7 3.4576 -0.6951 0.0051 20 7 2.2192 -1.0430 0.0065 21 1 -0.3633 0.0059 1.0276 22 1 -0.3633 0.8869 -0.5190 23 1 -0.3632 -0.8929 -0.5087 24 1 1.9381 2.1282 -0.0005 25 1 4.5760 2.4482 -0.4465 26 1 5.5563 0.9697 -0.5933 27 1 5.4922 0.7633 1.7927 28 1 6.0993 3.5549 1.0737 29 1 7.2040 2.1909 0.7782 30 1 5.1621 6.1691 5.0449 31 1 7.7325 1.2626 4.4160 32 1 8.0578 0.7370 2.6783 33 1 9.0338 3.0227 2.1691 34 1 8.7087 3.5494 3.9063 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336736618.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:30 Heat of formation + Delta-G solvation = 106.443448 kcal Electronic energy + Delta-G solvation = -16336.829852 eV Core-core repulsion = 13693.140036 eV Total energy + Delta-G solvation = -2643.689816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.15323 -39.09925 -36.53181 -35.16843 -34.10121 -32.22022 -28.97136 -28.30547 -27.24664 -24.79561 -23.22165 -22.96141 -21.97129 -20.74210 -18.40033 -17.95579 -17.51954 -17.02193 -16.24361 -15.89265 -15.52159 -15.15154 -14.96174 -14.66025 -14.09692 -14.00470 -13.57017 -13.34172 -13.26753 -12.96591 -12.47341 -12.32847 -12.11666 -11.86232 -11.74984 -11.46405 -10.98066 -10.84188 -10.54465 -10.29664 -10.10995 -9.09066 -8.17107 -6.20511 0.67883 1.42820 1.44294 1.48104 1.57761 1.62873 2.46970 3.13078 3.18178 3.42673 3.71052 3.79418 4.10308 4.19289 4.27302 4.35479 4.42514 4.47786 4.59620 4.62547 4.64566 4.73668 4.88109 4.89105 5.02579 5.13331 5.17748 5.45941 5.55987 5.73168 5.81202 6.30382 6.44756 6.59236 6.85461 7.45872 7.52407 8.99692 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.006120 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.018023 B = 4574.009592 C = 4990.762493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.289 5.289 3 C -0.024 4.024 4 C -0.032 4.032 5 C 0.148 3.852 6 N -0.681 5.681 7 C 0.109 3.891 8 C -0.022 4.022 9 C -0.458 4.458 10 H 0.023 0.977 11 C 0.014 3.986 12 N -0.958 5.958 13 Si 0.942 3.058 14 H -0.277 1.277 15 H -0.227 1.227 16 H -0.300 1.300 17 C -0.171 4.171 18 C -0.192 4.192 19 N -0.303 5.303 20 N -0.122 5.122 21 H 0.101 0.899 22 H 0.131 0.869 23 H 0.111 0.889 24 H 0.222 0.778 25 H 0.102 0.898 26 H 0.047 0.953 27 H 0.336 0.664 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 -5.674 -14.136 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.083 5.083 3 C -0.176 4.176 4 C -0.171 4.171 5 C 0.018 3.982 6 N -0.312 5.312 7 C -0.020 4.020 8 C -0.023 4.023 9 C -0.496 4.496 10 H 0.041 0.959 11 C -0.182 4.182 12 N -0.600 5.600 13 Si 0.767 3.233 14 H -0.203 1.203 15 H -0.149 1.149 16 H -0.227 1.227 17 C -0.208 4.208 18 C -0.230 4.230 19 N -0.170 5.170 20 N -0.101 5.101 21 H 0.119 0.881 22 H 0.149 0.851 23 H 0.130 0.870 24 H 0.239 0.761 25 H 0.120 0.880 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.530 -6.601 -13.929 16.740 hybrid contribution 0.653 1.210 0.053 1.376 sum -5.877 -5.391 -13.875 16.004 Atomic orbital electron populations 1.22729 0.69809 1.07930 1.06427 1.47621 1.11000 1.04142 1.45582 1.23895 0.90257 0.95954 1.07485 1.22131 0.96711 0.90732 1.07502 1.20105 0.90349 0.97670 0.90093 1.60185 1.37475 1.16457 1.17109 1.21553 0.90225 0.95926 0.94329 1.19392 0.88754 1.00268 0.93855 1.20261 1.18357 0.91370 1.19569 0.95892 1.25805 0.96888 0.99414 0.96068 1.70077 1.42459 1.11584 1.35831 0.85850 0.78339 0.77329 0.81765 1.20285 1.14942 1.22717 1.22818 1.05645 0.91433 1.00934 1.23017 0.97466 1.00001 1.02535 1.74929 1.10529 1.13554 1.17959 1.78126 0.96577 1.13579 1.21837 0.88102 0.85094 0.87002 0.76135 0.88022 0.93499 0.84641 0.92040 0.94961 0.92978 0.91039 0.88185 0.87865 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 11.39 127.77 1.46 2.20 16 2 N -0.29 -6.75 3.74 -369.24 -1.38 -8.13 16 3 C -0.02 -0.58 11.55 83.49 0.96 0.38 16 4 C -0.03 -0.97 6.81 41.60 0.28 -0.69 16 5 C 0.15 4.43 6.25 85.56 0.53 4.96 16 6 N -0.68 -25.39 6.39 -517.91 -3.31 -28.70 16 7 C 0.11 4.17 5.11 86.31 0.44 4.61 16 8 C -0.02 -0.96 0.92 -52.93 -0.05 -1.01 16 9 C -0.46 -26.04 9.32 25.60 0.24 -25.80 16 10 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 11 C 0.01 0.80 5.47 84.65 0.46 1.26 16 12 N -0.96 -60.45 13.96 21.45 0.30 -60.15 16 13 Si 0.94 43.87 24.97 68.60 1.71 45.59 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.23 -9.30 5.65 99.48 0.56 -8.74 16 16 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 17 C -0.17 -6.73 9.96 30.61 0.30 -6.42 16 18 C -0.19 -7.66 7.67 30.62 0.23 -7.43 16 19 N -0.30 -10.56 12.41 -48.60 -0.60 -11.17 16 20 N -0.12 -3.82 13.16 37.02 0.49 -3.33 16 21 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.22 3.84 8.06 -2.91 -0.02 3.81 16 25 H 0.10 2.64 8.12 -2.39 -0.02 2.62 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.34 12.95 8.75 -89.70 -0.78 12.16 16 28 H 0.06 2.45 6.50 -2.39 -0.02 2.44 16 29 H 0.03 1.07 8.09 -2.39 -0.02 1.05 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.07 3.08 7.38 -2.39 -0.02 3.06 16 Total: -1.00 -75.38 289.19 2.25 -73.14 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.17 Total: 20.70 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.87 Total: -27.94 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.50 Total: -111.49 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.71 Total: 45.59 kcal Total: -75.38 2.25 -73.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336736618.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.581 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds