Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38411 * 120.00229 * 180.02562 * 2 1 3 5 5 N 1.32506 * 119.21305 * 359.97438 * 4 2 1 6 6 C 1.32260 * 120.73943 * 180.02562 * 5 4 2 7 7 C 1.38626 * 119.19657 * 359.97438 * 6 5 4 8 8 C 1.38590 * 118.55706 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.40022 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47445 * 94.99782 * 9 8 7 11 11 C 1.46896 * 111.00055 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46915 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00165 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00205 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99900 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00293 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.46913 * 60.00084 * 16 14 12 18 18 H 1.48501 * 109.47292 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46852 * 300.00304 * 16 14 12 20 20 N 1.32293 * 119.19803 * 359.72848 * 8 7 6 21 21 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 22 22 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 23 23 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 24 24 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 25 25 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 26 26 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 27 27 H 1.07999 * 120.40468 * 179.97438 * 6 5 4 28 28 H 1.07994 * 120.72419 * 180.02562 * 7 6 5 29 29 H 1.09005 * 109.47163 * 214.99882 * 9 8 7 30 30 H 1.09001 * 109.47484 * 334.99557 * 9 8 7 31 31 H 1.00896 * 110.99438 * 303.95792 * 10 9 8 32 32 H 1.09003 * 109.47114 * 299.99705 * 11 10 9 33 33 H 1.08994 * 109.47324 * 60.00111 * 11 10 9 34 34 H 0.97002 * 120.00349 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1571 -1.1986 -0.0005 5 7 1.4789 -2.3370 -0.0005 6 6 2.1095 -3.4996 -0.0005 7 6 3.4957 -3.5170 -0.0011 8 6 4.1734 -2.3082 -0.0011 9 6 5.6801 -2.2786 -0.0011 10 7 6.1674 -2.1484 -1.3808 11 6 7.6355 -2.1156 -1.4197 12 6 8.0972 -1.9823 -2.8480 13 1 7.3725 -1.9270 -3.6469 14 6 9.4448 -1.9298 -3.1349 15 7 10.3272 -1.9967 -2.1621 16 14 10.0171 -1.7638 -4.9053 17 1 9.4780 -0.5070 -5.4840 18 1 11.5013 -1.7308 -4.9447 19 1 9.5271 -2.9223 -5.6945 20 7 3.4817 -1.1805 -0.0060 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5139 23 1 -0.3633 -0.8900 0.5139 24 1 2.3792 1.5834 1.0276 25 1 3.1499 1.1384 -0.5139 26 1 1.6084 2.0284 -0.5139 27 1 1.5513 -4.4242 -0.0001 28 1 4.0357 -4.4522 -0.0015 29 1 6.0269 -1.4298 0.5884 30 1 6.0617 -3.2027 0.4333 31 1 5.8063 -2.8890 -1.9631 32 1 7.9954 -1.2654 -0.8403 33 1 8.0309 -3.0383 -0.9951 34 1 11.2753 -1.9601 -2.3639 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336750167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 64.756468 kcal Electronic energy + Delta-G solvation = -16001.686990 eV Core-core repulsion = 13356.189491 eV Total energy + Delta-G solvation = -2645.497499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77410 -36.86766 -35.47704 -33.46944 -32.30537 -31.00613 -28.39479 -27.45579 -25.65710 -24.95111 -22.63385 -21.56946 -21.01712 -17.51129 -17.26621 -16.29181 -15.61252 -15.36974 -14.78268 -14.58858 -14.30941 -14.04839 -13.73082 -13.30169 -13.06489 -12.61074 -12.31887 -12.08336 -11.94812 -11.41924 -11.26116 -10.78715 -10.74610 -10.68651 -10.42591 -10.12584 -9.83120 -9.24492 -8.80817 -8.48392 -7.80604 -7.35012 -6.03615 -4.05603 1.37561 1.40427 2.75102 3.34340 3.37939 3.41513 4.08084 4.29568 4.44102 4.63190 4.83381 5.15569 5.27104 5.32398 5.33290 5.42091 5.44196 5.50239 5.63727 5.70602 5.85661 5.93799 6.04364 6.15506 6.48617 6.86676 7.08572 7.20062 7.37509 7.57633 7.75688 8.09546 8.33061 8.49701 8.56002 9.02615 9.59110 11.07460 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.034371 B = 0.004721 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.450580 B = 5929.474742 C = 6276.281340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.597 5.597 3 C 0.103 3.897 4 C 0.558 3.442 5 N -0.579 5.579 6 C 0.186 3.814 7 C -0.288 4.288 8 C 0.238 3.762 9 C 0.103 3.897 10 N -0.678 5.678 11 C 0.196 3.804 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.547 5.547 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.163 0.837 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.329 0.671 32 H 0.031 0.969 33 H -0.011 1.011 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.454 0.371 6.098 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.315 5.315 3 C -0.041 4.041 4 C 0.202 3.798 5 N -0.302 5.302 6 C 0.019 3.981 7 C -0.315 4.315 8 C 0.088 3.912 9 C -0.027 4.027 10 N -0.309 5.309 11 C 0.069 3.931 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.269 5.269 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.181 0.819 28 H 0.159 0.841 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.146 0.854 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.903 2.135 6.127 19.042 hybrid contribution 1.054 -1.642 -0.747 2.090 sum -16.848 0.492 5.380 17.694 Atomic orbital electron populations 1.21553 0.78007 1.02742 1.01404 1.45795 1.05506 1.02122 1.78122 1.21627 0.97997 0.82920 1.01509 1.19278 0.85488 0.86151 0.88838 1.67812 1.41120 0.98016 1.23268 1.22798 0.91689 0.95034 0.88557 1.22435 0.96431 1.00241 1.12344 1.21575 0.96918 0.87049 0.85608 1.20867 0.86210 1.01251 0.94383 1.60657 1.13448 1.51388 1.05385 1.19593 0.79835 0.95915 0.97717 1.21119 0.91601 1.50178 0.92447 0.92016 1.24972 0.96643 0.95292 0.97547 1.69948 1.01526 1.50632 1.31620 0.86526 0.77298 0.78747 0.84628 1.20144 1.21306 1.20266 1.67753 1.06073 1.31995 1.21084 0.93333 0.91648 0.90375 0.93277 0.89537 0.91641 0.81948 0.84148 0.89591 0.93912 0.85428 0.95077 0.99308 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.06 10.44 59.85 0.62 1.69 16 2 N -0.60 -8.08 3.37 -191.89 -0.65 -8.73 16 3 C 0.10 1.20 10.44 59.85 0.62 1.83 16 4 C 0.56 9.06 8.17 -322.80 -2.64 6.42 16 5 N -0.58 -8.69 9.11 -13.93 -0.13 -8.81 16 6 C 0.19 2.41 11.30 -17.22 -0.19 2.22 16 7 C -0.29 -4.05 9.83 -39.31 -0.39 -4.43 16 8 C 0.24 4.03 6.33 -82.27 -0.52 3.51 16 9 C 0.10 1.89 6.04 -4.98 -0.03 1.86 16 10 N -0.68 -14.89 6.48 -116.34 -0.75 -15.65 16 11 C 0.20 5.13 5.44 -4.98 -0.03 5.10 16 12 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 13 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 16 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 N -0.55 -9.75 9.05 -10.16 -0.09 -9.84 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 23 H 0.08 0.82 7.33 -51.93 -0.38 0.44 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 1.22 7.33 -51.93 -0.38 0.84 16 26 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 27 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 31 H 0.33 6.94 8.72 -39.29 -0.34 6.60 16 32 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 33 H -0.01 -0.30 8.14 -51.93 -0.42 -0.72 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -32.53 295.46 -9.28 -41.82 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.87 Total: 1.32 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.97 Total: 4.72 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -0.88 Total: -69.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.53 -9.28 -41.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336750167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.572 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds