Wall clock time and date at job start Sun Mar 29 2020 21:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38411 * 120.00229 * 180.02562 * 2 1 3 5 5 N 1.32506 * 119.21305 * 359.97438 * 4 2 1 6 6 C 1.32260 * 120.73943 * 180.02562 * 5 4 2 7 7 C 1.38626 * 119.19657 * 359.97438 * 6 5 4 8 8 C 1.38590 * 118.55706 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.40022 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47445 * 94.99782 * 9 8 7 11 11 C 1.46896 * 111.00055 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46915 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00165 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00205 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99900 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00293 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.46913 * 60.00084 * 16 14 12 18 18 H 1.48501 * 109.47292 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46852 * 300.00304 * 16 14 12 20 20 N 1.32293 * 119.19803 * 359.72848 * 8 7 6 21 21 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 22 22 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 23 23 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 24 24 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 25 25 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 26 26 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 27 27 H 1.07999 * 120.40468 * 179.97438 * 6 5 4 28 28 H 1.07994 * 120.72419 * 180.02562 * 7 6 5 29 29 H 1.09005 * 109.47163 * 214.99882 * 9 8 7 30 30 H 1.09001 * 109.47484 * 334.99557 * 9 8 7 31 31 H 1.00896 * 110.99438 * 303.95792 * 10 9 8 32 32 H 1.09003 * 109.47114 * 299.99705 * 11 10 9 33 33 H 1.08994 * 109.47324 * 60.00111 * 11 10 9 34 34 H 0.97002 * 120.00349 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1571 -1.1986 -0.0005 5 7 1.4789 -2.3370 -0.0005 6 6 2.1095 -3.4996 -0.0005 7 6 3.4957 -3.5170 -0.0011 8 6 4.1734 -2.3082 -0.0011 9 6 5.6801 -2.2786 -0.0011 10 7 6.1674 -2.1484 -1.3808 11 6 7.6355 -2.1156 -1.4197 12 6 8.0972 -1.9823 -2.8480 13 1 7.3725 -1.9270 -3.6469 14 6 9.4448 -1.9298 -3.1349 15 7 10.3272 -1.9967 -2.1621 16 14 10.0171 -1.7638 -4.9053 17 1 9.4780 -0.5070 -5.4840 18 1 11.5013 -1.7308 -4.9447 19 1 9.5271 -2.9223 -5.6945 20 7 3.4817 -1.1805 -0.0060 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5139 23 1 -0.3633 -0.8900 0.5139 24 1 2.3792 1.5834 1.0276 25 1 3.1499 1.1384 -0.5139 26 1 1.6084 2.0284 -0.5139 27 1 1.5513 -4.4242 -0.0001 28 1 4.0357 -4.4522 -0.0015 29 1 6.0269 -1.4298 0.5884 30 1 6.0617 -3.2027 0.4333 31 1 5.8063 -2.8890 -1.9631 32 1 7.9954 -1.2654 -0.8403 33 1 8.0309 -3.0383 -0.9951 34 1 11.2753 -1.9601 -2.3639 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336750167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:32 Heat of formation + Delta-G solvation = 43.470446 kcal Electronic energy + Delta-G solvation = -16002.610021 eV Core-core repulsion = 13356.189491 eV Total energy + Delta-G solvation = -2646.420530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.91403 -38.02378 -37.02402 -35.06003 -34.07124 -32.26090 -29.66946 -28.88679 -26.69964 -26.63033 -23.93590 -23.40376 -22.28024 -18.83203 -18.62830 -18.01502 -16.80962 -16.67099 -16.43883 -16.01240 -15.43589 -15.41910 -15.07487 -14.73684 -14.52390 -13.96932 -13.42366 -13.34049 -13.11988 -13.07738 -12.84942 -12.61777 -12.60713 -12.07209 -11.85878 -11.61874 -11.36960 -11.06956 -10.65734 -10.00506 -9.18234 -8.82338 -8.22466 -6.33599 0.16796 0.32155 1.41820 1.45286 1.53389 1.77399 2.40374 2.90038 3.10972 3.14039 3.56279 3.67057 3.89312 4.21309 4.34794 4.40826 4.43103 4.51465 4.57289 4.68416 4.78870 4.88335 4.94610 4.96868 5.06565 5.24608 5.41325 5.59088 5.91748 5.97769 6.02319 6.37958 6.46986 6.64823 6.85283 7.36385 7.36865 8.88860 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.034371 B = 0.004721 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.450580 B = 5929.474742 C = 6276.281340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.602 5.602 3 C 0.103 3.897 4 C 0.539 3.461 5 N -0.583 5.583 6 C 0.193 3.807 7 C -0.284 4.284 8 C 0.214 3.786 9 C 0.109 3.891 10 N -0.681 5.681 11 C 0.211 3.789 12 C -0.538 4.538 13 H 0.061 0.939 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.973 3.027 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.265 1.265 20 N -0.579 5.579 21 H 0.053 0.947 22 H 0.094 0.906 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.095 0.905 27 H 0.209 0.791 28 H 0.165 0.835 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.336 0.664 32 H 0.002 0.998 33 H -0.028 1.028 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.082 -0.207 5.326 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.320 5.320 3 C -0.039 4.039 4 C 0.183 3.817 5 N -0.306 5.306 6 C 0.026 3.974 7 C -0.310 4.310 8 C 0.066 3.934 9 C -0.021 4.021 10 N -0.312 5.312 11 C 0.084 3.916 12 C -0.576 4.576 13 H 0.079 0.921 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.797 3.203 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.190 1.190 20 N -0.303 5.303 21 H 0.072 0.928 22 H 0.112 0.888 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.225 0.775 28 H 0.182 0.818 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.020 0.980 33 H -0.010 1.010 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.565 1.569 5.363 20.347 hybrid contribution 1.468 -1.458 -0.437 2.115 sum -18.096 0.112 4.926 18.755 Atomic orbital electron populations 1.21727 0.75985 1.03938 1.02065 1.46176 1.06821 1.01726 1.77270 1.21660 0.97194 0.83143 1.01936 1.19647 0.85270 0.87503 0.89306 1.67944 1.41071 0.98303 1.23284 1.23560 0.91573 0.95936 0.86370 1.22662 0.97134 0.99881 1.11334 1.21384 0.95877 0.88362 0.87734 1.20773 0.87902 1.01336 0.92057 1.60459 1.10789 1.52027 1.07963 1.19223 0.82371 0.93709 0.96320 1.21464 0.92182 1.50636 0.93340 0.92087 1.25906 0.96660 0.94532 1.02276 1.70070 1.01958 1.51140 1.34001 0.85393 0.76962 0.79072 0.78908 1.19648 1.20567 1.19012 1.67659 1.07287 1.32847 1.22495 0.92834 0.88796 0.90855 0.92610 0.92567 0.88604 0.77486 0.81780 0.91197 0.92230 0.84705 0.98034 1.00994 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.88 10.44 127.77 1.33 3.22 16 2 N -0.60 -15.65 3.37 -761.01 -2.57 -18.21 16 3 C 0.10 2.36 10.44 127.77 1.33 3.69 16 4 C 0.54 17.13 8.17 261.49 2.14 19.27 16 5 N -0.58 -16.42 9.11 -197.98 -1.80 -18.23 16 6 C 0.19 4.47 11.30 84.72 0.96 5.42 16 7 C -0.28 -7.44 9.83 22.45 0.22 -7.22 16 8 C 0.21 7.24 6.33 42.57 0.27 7.51 16 9 C 0.11 4.09 6.04 85.55 0.52 4.60 16 10 N -0.68 -30.59 6.48 -521.99 -3.38 -33.98 16 11 C 0.21 11.45 5.44 85.56 0.47 11.91 16 12 C -0.54 -31.12 9.32 25.60 0.24 -30.89 16 13 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 14 C 0.00 0.28 5.46 84.66 0.46 0.74 16 15 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 16 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 N -0.58 -20.86 9.05 -186.04 -1.68 -22.54 16 21 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.09 1.13 8.07 -2.39 -0.02 1.11 16 23 H 0.07 1.40 7.33 -2.38 -0.02 1.38 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.63 7.33 -2.39 -0.02 1.61 16 26 H 0.10 1.55 8.07 -2.38 -0.02 1.53 16 27 H 0.21 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 30 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 31 H 0.34 14.25 8.72 -89.70 -0.78 13.46 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -71.00 295.46 1.12 -69.88 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.31 Total: 14.25 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 7.94 Total: 18.27 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -9.15 Total: -148.97 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.00 1.12 -69.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336750167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.348 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds