Wall clock time and date at job start Sun Mar 29 2020 21:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47076 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99782 * 2 1 3 5 5 C 1.50697 * 109.46909 * 60.00127 * 4 2 1 6 6 H 1.07997 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99868 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47212 * 60.00188 * 9 7 5 11 11 H 1.48497 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47045 * 299.99864 * 9 7 5 13 13 C 1.53007 * 109.47025 * 119.99826 * 2 1 3 14 14 N 1.46900 * 109.46907 * 299.99895 * 13 2 1 15 15 C 1.46904 * 110.99784 * 180.02562 * 14 13 2 16 16 C 1.50695 * 109.47090 * 180.02562 * 15 14 13 17 17 C 1.40900 * 126.29168 * 270.29573 * 16 15 14 18 18 C 1.34850 * 107.41621 * 180.12828 * 17 16 15 19 19 N 1.36348 * 108.21820 * 359.62102 * 18 17 16 20 20 H 0.97004 * 125.63569 * 180.26281 * 19 18 17 21 21 C 1.34858 * 126.29153 * 89.99963 * 16 15 14 22 22 H 1.09003 * 109.47101 * 300.00003 * 1 2 3 23 23 H 1.08999 * 109.46979 * 60.00323 * 1 2 3 24 24 H 1.09003 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47057 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46953 * 299.99693 * 3 2 1 27 27 H 1.09003 * 109.47158 * 60.00032 * 3 2 1 28 28 H 1.09006 * 109.46702 * 179.97438 * 4 2 1 29 29 H 1.08991 * 109.47092 * 299.99655 * 4 2 1 30 30 H 0.96997 * 119.99866 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46782 * 180.02562 * 13 2 1 32 32 H 1.08998 * 109.47222 * 60.00448 * 13 2 1 33 33 H 1.00903 * 111.00187 * 56.04704 * 14 13 2 34 34 H 1.08999 * 109.46993 * 60.00033 * 15 14 13 35 35 H 1.08999 * 109.46857 * 300.00376 * 15 14 13 36 36 H 1.07999 * 126.29093 * 359.97438 * 17 16 15 37 37 H 1.08002 * 125.89234 * 179.89015 * 18 17 16 38 38 H 1.07990 * 125.89063 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8525 9 14 1.2481 0.3984 -5.2572 10 1 1.7420 1.7988 -5.2571 11 1 1.7432 -0.3016 -6.4696 12 1 -0.2370 0.3973 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.5002 0.0422 4.8771 17 6 2.1356 1.1100 5.5414 18 6 1.3403 1.4783 6.5663 19 7 0.2332 0.6825 6.5540 20 1 -0.5062 0.7332 7.1798 21 6 0.3368 -0.1958 5.5163 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1301 -0.7208 -1.2493 29 1 1.6768 -1.7489 -1.2491 30 1 2.8617 -1.8824 -4.7335 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.5437 0.0415 2.4402 34 1 3.1117 -0.6938 3.6869 35 1 1.6587 -1.7220 3.6874 36 1 3.0861 1.5508 5.2796 37 1 1.5430 2.2701 7.2722 38 1 -0.3880 -0.9512 5.2515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336762972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:01 Heat of formation + Delta-G solvation = 28.380133 kcal Electronic energy + Delta-G solvation = -16484.401296 eV Core-core repulsion = 13940.866745 eV Total energy + Delta-G solvation = -2543.534552 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00742 -37.50992 -34.45502 -32.26228 -30.76403 -29.01512 -26.94334 -26.23559 -25.76213 -23.91153 -21.97605 -20.75290 -19.34188 -18.34530 -17.51800 -16.15540 -15.12027 -14.73086 -14.32253 -14.05114 -13.70387 -13.63675 -13.36186 -12.88242 -12.48014 -12.45886 -12.00885 -11.89149 -11.38970 -11.37476 -10.88015 -10.77382 -10.71495 -10.40247 -10.17179 -10.06024 -9.58817 -8.97632 -8.79236 -8.65384 -8.25738 -8.17396 -7.83077 -5.90532 -3.90333 2.26504 2.99717 3.32055 3.38680 3.42983 3.45516 4.52999 4.88906 5.08388 5.16296 5.39779 5.41908 5.45142 5.77207 5.80205 5.91123 6.01081 6.10068 6.17135 6.36350 6.42895 6.47056 6.62062 6.77515 6.89270 6.92180 6.98430 7.13646 7.29951 7.35783 7.36247 7.54428 7.58159 7.77062 7.87523 7.95222 8.10419 8.55394 9.15017 9.72016 11.21202 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.058973 B = 0.004229 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.680151 B = 6619.583873 C = 6710.431127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.128 3.872 16 C -0.154 4.154 17 C -0.178 4.178 18 C -0.026 4.026 19 N -0.563 5.563 20 H 0.411 0.589 21 C -0.017 4.017 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.337 0.663 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 3.254 19.470 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.060 4.060 14 N -0.313 5.313 15 C -0.001 4.001 16 C -0.161 4.161 17 C -0.203 4.203 18 C -0.157 4.157 19 N -0.158 5.158 20 H 0.247 0.753 21 C -0.148 4.148 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.152 0.848 37 H 0.177 0.823 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.803 3.604 19.428 20.122 hybrid contribution -1.160 -0.392 -0.666 1.394 sum -4.963 3.212 18.762 19.672 Atomic orbital electron populations 1.21765 0.96222 1.00251 1.00349 1.20619 0.94639 0.96141 0.94444 1.21593 0.99746 0.95846 1.00103 1.19123 0.96118 0.94949 0.90205 1.21223 1.30691 1.11871 0.90663 0.92364 1.25014 0.95450 0.95133 0.99004 1.69959 1.37344 1.23228 1.23322 0.86731 0.79121 0.79846 0.82732 1.20313 1.21477 1.20398 1.22117 0.99768 0.94567 0.89523 1.60585 1.16207 1.53729 1.00744 1.20204 0.99775 0.93346 0.86786 1.19477 0.96257 1.00926 0.99443 1.20837 1.01483 1.00252 0.97718 1.21806 0.89633 1.00571 1.03651 1.41913 1.18902 1.28795 1.26226 0.75320 1.21670 1.00698 0.99291 0.93161 0.94787 0.91838 0.94194 0.94214 0.92856 0.93807 0.96674 0.96953 0.93159 0.91648 0.96084 0.84456 0.90853 0.95604 0.84800 0.82291 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.89 37.16 0.29 -2.19 16 2 C -0.06 -1.20 0.60 -154.50 -0.09 -1.30 16 3 C -0.12 -2.35 8.06 37.16 0.30 -2.05 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -14.12 7.65 -34.44 -0.26 -14.39 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.07 1.25 4.65 -3.82 -0.02 1.24 16 14 N -0.68 -10.74 5.70 -115.05 -0.66 -11.39 16 15 C 0.13 1.78 6.18 -4.98 -0.03 1.75 16 16 C -0.15 -1.98 5.65 -104.82 -0.59 -2.57 16 17 C -0.18 -2.19 10.81 -39.78 -0.43 -2.62 16 18 C -0.03 -0.26 11.94 -16.75 -0.20 -0.46 16 19 N -0.56 -4.97 6.07 -12.85 -0.08 -5.05 16 20 H 0.41 2.23 8.96 -40.82 -0.37 1.87 16 21 C -0.02 -0.18 11.85 -16.75 -0.20 -0.38 16 22 H 0.03 0.57 6.57 -51.93 -0.34 0.22 16 23 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 27 H 0.04 0.82 7.60 -51.93 -0.39 0.42 16 28 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.34 5.17 6.76 -39.29 -0.27 4.91 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -31.27 307.14 -7.97 -39.24 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.14 Total: 2.96 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -1.44 Total: -20.74 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.00 Total: -42.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.27 -7.97 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336762972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.620 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds