Wall clock time and date at job start Sun Mar 29 2020 21:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47076 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99782 * 2 1 3 5 5 C 1.50697 * 109.46909 * 60.00127 * 4 2 1 6 6 H 1.07997 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99868 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99990 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47212 * 60.00188 * 9 7 5 11 11 H 1.48497 * 109.46964 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47045 * 299.99864 * 9 7 5 13 13 C 1.53007 * 109.47025 * 119.99826 * 2 1 3 14 14 N 1.46900 * 109.46907 * 299.99895 * 13 2 1 15 15 C 1.46904 * 110.99784 * 180.02562 * 14 13 2 16 16 C 1.50695 * 109.47090 * 180.02562 * 15 14 13 17 17 C 1.40900 * 126.29168 * 270.29573 * 16 15 14 18 18 C 1.34850 * 107.41621 * 180.12828 * 17 16 15 19 19 N 1.36348 * 108.21820 * 359.62102 * 18 17 16 20 20 H 0.97004 * 125.63569 * 180.26281 * 19 18 17 21 21 C 1.34858 * 126.29153 * 89.99963 * 16 15 14 22 22 H 1.09003 * 109.47101 * 300.00003 * 1 2 3 23 23 H 1.08999 * 109.46979 * 60.00323 * 1 2 3 24 24 H 1.09003 * 109.47148 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47057 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46953 * 299.99693 * 3 2 1 27 27 H 1.09003 * 109.47158 * 60.00032 * 3 2 1 28 28 H 1.09006 * 109.46702 * 179.97438 * 4 2 1 29 29 H 1.08991 * 109.47092 * 299.99655 * 4 2 1 30 30 H 0.96997 * 119.99866 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46782 * 180.02562 * 13 2 1 32 32 H 1.08998 * 109.47222 * 60.00448 * 13 2 1 33 33 H 1.00903 * 111.00187 * 56.04704 * 14 13 2 34 34 H 1.08999 * 109.46993 * 60.00033 * 15 14 13 35 35 H 1.08999 * 109.46857 * 300.00376 * 15 14 13 36 36 H 1.07999 * 126.29093 * 359.97438 * 17 16 15 37 37 H 1.08002 * 125.89234 * 179.89015 * 18 17 16 38 38 H 1.07990 * 125.89063 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8525 9 14 1.2481 0.3984 -5.2572 10 1 1.7420 1.7988 -5.2571 11 1 1.7432 -0.3016 -6.4696 12 1 -0.2370 0.3973 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0218 -0.6944 3.6704 16 6 1.5002 0.0422 4.8771 17 6 2.1356 1.1100 5.5414 18 6 1.3403 1.4783 6.5663 19 7 0.2332 0.6825 6.5540 20 1 -0.5062 0.7332 7.1798 21 6 0.3368 -0.1958 5.5163 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1301 -0.7208 -1.2493 29 1 1.6768 -1.7489 -1.2491 30 1 2.8617 -1.8824 -4.7335 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 0.5437 0.0415 2.4402 34 1 3.1117 -0.6938 3.6869 35 1 1.6587 -1.7220 3.6874 36 1 3.0861 1.5508 5.2796 37 1 1.5430 2.2701 7.2722 38 1 -0.3880 -0.9512 5.2515 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336762972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:01 Heat of formation + Delta-G solvation = 8.682825 kcal Electronic energy + Delta-G solvation = -16485.255436 eV Core-core repulsion = 13940.866745 eV Total energy + Delta-G solvation = -2544.388691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.80194 -39.11213 -35.92247 -34.25568 -31.81465 -29.94000 -28.90622 -27.86963 -27.12379 -25.50657 -23.70005 -21.54651 -20.27299 -19.53484 -18.79066 -18.30465 -16.61849 -16.39516 -15.71618 -15.45855 -14.85235 -14.70820 -14.41253 -14.35595 -14.01853 -13.86042 -13.51939 -13.48380 -12.84505 -12.70780 -12.57982 -12.54538 -12.23516 -12.18669 -12.10230 -11.87300 -11.34639 -10.83987 -10.73374 -10.48001 -9.56098 -9.19756 -8.90207 -8.11850 -6.19042 1.42074 1.44747 1.47916 1.52009 2.08860 2.45763 2.65357 3.21742 3.61724 4.13868 4.22312 4.32541 4.39835 4.43671 4.54806 4.59809 4.76235 4.84092 4.86111 4.99555 5.04821 5.10821 5.23464 5.24171 5.32731 5.53524 5.55733 5.58274 5.60460 5.68855 5.90162 5.94843 6.09575 6.21500 6.30344 6.40654 6.64156 6.92967 6.95836 7.48076 9.00437 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.058973 B = 0.004229 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.680151 B = 6619.583873 C = 6710.431127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.106 4.106 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.081 3.919 14 N -0.678 5.678 15 C 0.132 3.868 16 C -0.184 4.184 17 C -0.214 4.214 18 C -0.015 4.015 19 N -0.550 5.550 20 H 0.429 0.571 21 C -0.013 4.013 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.029 0.971 26 H 0.039 0.961 27 H 0.064 0.936 28 H -0.017 1.017 29 H -0.015 1.015 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.342 0.658 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.127 0.873 37 H 0.190 0.810 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 4.541 20.925 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.055 4.055 3 C -0.163 4.163 4 C 0.002 3.998 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.048 4.048 14 N -0.310 5.310 15 C 0.003 3.997 16 C -0.191 4.191 17 C -0.239 4.239 18 C -0.146 4.146 19 N -0.146 5.146 20 H 0.269 0.731 21 C -0.146 4.146 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.145 0.855 37 H 0.207 0.793 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.586 4.905 20.919 22.200 hybrid contribution -0.594 -0.805 -1.030 1.436 sum -6.180 4.100 19.889 21.227 Atomic orbital electron populations 1.21670 0.94654 1.00421 1.01073 1.20492 0.95853 0.95992 0.93197 1.21492 0.99055 0.95419 1.00356 1.19006 0.94034 0.94026 0.92696 1.21600 1.30318 1.11963 0.91484 0.91624 1.25929 0.95689 0.95902 1.02576 1.70106 1.38836 1.24952 1.24092 0.85621 0.78966 0.78760 0.78444 1.19363 1.21308 1.19206 1.21832 0.99020 0.94260 0.89713 1.60531 1.16490 1.53560 1.00413 1.20140 0.99267 0.93772 0.86495 1.19463 0.97758 1.02042 0.99843 1.20991 1.02216 1.01252 0.99408 1.22216 0.88960 1.00461 1.02939 1.41950 1.19122 1.27723 1.25831 0.73147 1.21930 1.00191 0.99494 0.92990 0.91617 0.93436 0.94331 0.95218 0.94235 0.91678 0.99837 0.99688 0.93157 0.92787 0.96411 0.83882 0.91835 0.95003 0.85547 0.79278 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 7.89 71.98 0.57 -3.96 16 2 C -0.05 -2.28 0.60 -52.18 -0.03 -2.31 16 3 C -0.11 -4.26 8.06 71.98 0.58 -3.68 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.52 -29.15 7.65 25.60 0.20 -28.96 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.54 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.01 16 9 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.08 2.95 4.65 86.31 0.40 3.35 16 14 N -0.68 -20.61 5.70 -517.92 -2.95 -23.56 16 15 C 0.13 3.58 6.18 85.55 0.53 4.11 16 16 C -0.18 -4.46 5.65 -19.99 -0.11 -4.58 16 17 C -0.21 -4.99 10.81 22.14 0.24 -4.75 16 18 C -0.01 -0.25 11.94 83.21 0.99 0.75 16 19 N -0.55 -7.92 6.07 -194.56 -1.18 -9.10 16 20 H 0.43 3.06 8.96 -92.71 -0.83 2.23 16 21 C -0.01 -0.25 11.85 83.22 0.99 0.74 16 22 H 0.07 2.03 6.57 -2.39 -0.02 2.02 16 23 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 27 H 0.06 2.33 7.60 -2.39 -0.02 2.31 16 28 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 29 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.34 9.76 6.76 -89.69 -0.61 9.15 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.18 2.54 8.06 -2.92 -0.02 2.52 16 Total: -1.00 -67.94 307.14 2.71 -65.23 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.40 Total: 15.20 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 4.93 Total: -36.82 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -3.85 Total: -90.67 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.94 2.71 -65.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336762972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.910 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds