Wall clock time and date at job start Sun Mar 29 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.43569 * 2 1 4 4 C 1.54896 * 110.48891 * 122.53725 * 2 1 3 5 5 C 1.54886 * 102.74780 * 156.61834 * 4 2 1 6 6 C 1.54262 * 104.19885 * 322.06183 * 5 4 2 7 7 H 1.09000 * 110.03231 * 264.32123 * 6 5 4 8 8 N 1.46903 * 110.03206 * 142.89409 * 6 5 4 9 9 C 1.46893 * 111.00189 * 307.23935 * 8 6 5 10 10 C 1.50693 * 109.47500 * 196.30609 * 9 8 6 11 11 H 1.08005 * 120.00102 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00355 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47005 * 60.00116 * 14 12 10 16 16 H 1.48505 * 109.46828 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47277 * 299.99876 * 14 12 10 18 18 C 1.46907 * 110.99791 * 71.19681 * 8 6 5 19 19 C 1.52996 * 109.47445 * 69.99905 * 18 8 6 20 20 C 1.47197 * 109.47146 * 179.97438 * 19 18 8 21 21 N 7.79607 * 140.03038 * 194.40494 * 2 1 3 22 22 C 1.53873 * 106.59750 * 23.60879 * 6 5 4 23 23 H 1.09003 * 109.47177 * 298.91611 * 1 2 3 24 24 H 1.08994 * 109.47187 * 58.91450 * 1 2 3 25 25 H 1.08994 * 109.47273 * 178.91671 * 1 2 3 26 26 H 1.08995 * 110.75655 * 274.94053 * 4 2 1 27 27 H 1.09001 * 110.75230 * 38.30706 * 4 2 1 28 28 H 1.09000 * 110.48737 * 80.74229 * 5 4 2 29 29 H 1.08998 * 110.48749 * 203.37894 * 5 4 2 30 30 H 1.08998 * 109.47058 * 316.30707 * 9 8 6 31 31 H 1.09006 * 109.47235 * 76.30207 * 9 8 6 32 32 H 0.97000 * 120.00403 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.46905 * 190.00164 * 18 8 6 34 34 H 1.09000 * 109.46518 * 309.99521 * 18 8 6 35 35 H 1.08999 * 109.46843 * 299.99923 * 19 18 8 36 36 H 1.09000 * 109.46819 * 59.99728 * 19 18 8 37 37 H 1.08998 * 110.03050 * 240.71547 * 22 6 5 38 38 H 1.09002 * 110.06876 * 119.30849 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7804 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3165 -1.5414 -0.7321 7 1 3.1692 -2.6146 -0.8530 8 7 4.4975 -1.1065 -1.4898 9 6 4.7967 0.3084 -1.2320 10 6 5.7321 0.8257 -2.2941 11 1 6.0709 0.1690 -3.0818 12 6 6.1564 2.1371 -2.2599 13 7 5.7451 2.9365 -1.2999 14 14 7.3165 2.7782 -3.5762 15 1 6.6759 2.6431 -4.9091 16 1 7.6189 4.2086 -3.3156 17 1 8.5765 1.9928 -3.5508 18 6 5.6587 -1.9539 -1.1870 19 6 5.4433 -3.3463 -1.7834 20 6 6.6071 -4.1952 -1.4805 21 7 7.5047 -4.8506 -1.2459 22 6 2.0699 -0.7804 -1.2162 23 1 -0.3634 0.4969 0.8996 24 1 -0.3633 0.5306 -0.8800 25 1 -0.3633 -1.0274 -0.0194 26 1 2.1251 -0.1355 2.1003 27 1 1.4581 -1.6582 1.4244 28 1 4.1898 -0.3696 0.8832 29 1 3.8316 -2.0705 1.3172 30 1 3.8717 0.8846 -1.2505 31 1 5.2671 0.4079 -0.2537 32 1 6.0433 3.8592 -1.2760 33 1 6.5555 -1.5088 -1.6180 34 1 5.7769 -2.0356 -0.1066 35 1 4.5465 -3.7913 -1.3523 36 1 5.3250 -3.2644 -2.8638 37 1 1.3176 -1.4842 -1.5721 38 1 2.3404 -0.0884 -2.0138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339054922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:16 Heat of formation + Delta-G solvation = 10.526671 kcal Electronic energy + Delta-G solvation = -17110.299337 eV Core-core repulsion = 14565.990601 eV Total energy + Delta-G solvation = -2544.308736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.08191 -36.64335 -35.22722 -32.70656 -31.10817 -29.80859 -28.08315 -26.38123 -24.15253 -23.07752 -21.76590 -19.59703 -18.39275 -17.24401 -16.54627 -15.48227 -15.28757 -14.60690 -14.24908 -13.96055 -13.68555 -13.31492 -13.12969 -12.70432 -12.38979 -12.26927 -12.06050 -11.79191 -11.69446 -11.15488 -11.02113 -10.83778 -10.74744 -10.62700 -10.39514 -10.34953 -10.18149 -10.14271 -10.05925 -9.57184 -9.22376 -8.42884 -7.28884 -6.03754 -4.04917 2.96637 3.00503 3.32952 3.37464 3.40137 4.18962 4.42797 4.86036 5.03131 5.09265 5.26480 5.32220 5.38321 5.52882 5.63436 5.69143 5.81003 5.84827 5.94449 5.99037 6.08880 6.14099 6.21183 6.27872 6.33507 6.36676 6.48346 6.55001 6.69381 6.79114 6.84645 7.28961 7.34977 7.76438 7.80870 8.08979 8.14322 8.51684 9.02704 9.59416 11.06388 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.009988 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.182736 B = 2802.770228 C = 4522.938397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.165 4.165 6 C 0.078 3.922 7 H 0.070 0.930 8 N -0.527 5.527 9 C 0.193 3.807 10 C -0.509 4.509 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.065 3.935 19 C -0.028 4.028 20 C 0.219 3.781 21 N -0.457 5.457 22 C -0.110 4.110 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.040 0.960 31 H -0.004 1.004 32 H 0.261 0.739 33 H 0.091 0.909 34 H 0.031 0.969 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 -7.383 2.155 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.204 4.204 6 C -0.031 4.031 7 H 0.089 0.911 8 N -0.250 5.250 9 C 0.069 3.931 10 C -0.548 4.548 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.065 4.065 19 C -0.068 4.068 20 C -0.099 4.099 21 N -0.135 5.135 22 C -0.148 4.148 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.492 -8.217 2.049 11.307 hybrid contribution 0.497 0.849 0.164 0.998 sum -6.995 -7.367 2.213 10.397 Atomic orbital electron populations 1.21780 0.95754 1.01080 1.01148 1.22000 0.94602 1.00127 0.95147 0.90399 1.22443 0.96183 0.99094 0.97421 1.23140 0.97786 1.01598 0.97860 1.22376 0.92165 0.98266 0.90335 0.91147 1.62327 1.02072 1.05811 1.54790 1.19754 0.96944 0.81136 0.95300 1.21160 1.27221 0.95561 1.10862 0.91924 1.24957 0.96638 0.96949 0.95913 1.69936 1.45038 1.06270 1.32462 0.86625 0.81284 0.77682 0.82200 1.20170 1.21449 1.20356 1.21861 0.96704 0.90267 0.97674 1.19440 0.89674 0.93149 1.04569 1.29410 0.94532 0.93344 0.92599 1.81161 1.11401 1.11158 1.09785 1.22221 0.95534 0.98943 0.98064 0.93270 0.92893 0.93105 0.92396 0.92217 0.89967 0.92798 0.94239 0.98664 0.92914 0.89103 0.95115 0.88119 0.86691 0.92451 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.12 37.16 0.34 -1.32 16 2 C -0.10 -1.44 3.31 -88.96 -0.29 -1.73 16 3 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 4 C -0.11 -1.54 6.33 -24.74 -0.16 -1.70 16 5 C -0.16 -2.52 5.26 -25.08 -0.13 -2.65 16 6 C 0.08 1.19 2.85 -66.60 -0.19 1.00 16 7 H 0.07 0.92 6.34 -51.93 -0.33 0.59 16 8 N -0.53 -9.67 4.33 -226.75 -0.98 -10.65 16 9 C 0.19 4.51 3.54 -4.98 -0.02 4.49 16 10 C -0.51 -13.36 8.41 -34.44 -0.29 -13.65 16 11 H 0.06 1.62 7.64 -52.48 -0.40 1.22 16 12 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 14 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.06 1.07 4.67 -3.82 -0.02 1.05 16 19 C -0.03 -0.35 5.73 -29.52 -0.17 -0.52 16 20 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 21 N -0.46 -7.78 18.54 42.15 0.78 -7.00 16 22 C -0.11 -1.66 5.35 -25.62 -0.14 -1.79 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.71 8.06 -51.93 -0.42 0.30 16 28 H 0.08 1.52 5.59 -51.93 -0.29 1.23 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.99 6.01 -51.93 -0.31 0.68 16 31 H 0.00 -0.11 6.49 -51.93 -0.34 -0.45 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.09 1.72 7.10 -51.93 -0.37 1.35 16 34 H 0.03 0.51 7.27 -51.93 -0.38 0.13 16 35 H 0.10 1.04 6.53 -51.93 -0.34 0.70 16 36 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.75 7.81 -51.93 -0.41 0.34 16 38 H 0.08 1.48 6.86 -51.93 -0.36 1.12 16 LS Contribution 303.23 15.07 4.57 4.57 Total: -1.00 -28.59 303.23 -7.41 -36.00 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.02 Total: -1.59 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.48 Total: -12.51 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.54 Total: -42.52 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.59 -7.41 -36.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339054922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.526 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds