Wall clock time and date at job start Sun Mar 29 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.43569 * 2 1 4 4 C 1.54896 * 110.48891 * 122.53725 * 2 1 3 5 5 C 1.54886 * 102.74780 * 156.61834 * 4 2 1 6 6 C 1.54262 * 104.19885 * 322.06183 * 5 4 2 7 7 H 1.09000 * 110.03231 * 264.32123 * 6 5 4 8 8 N 1.46903 * 110.03206 * 142.89409 * 6 5 4 9 9 C 1.46893 * 111.00189 * 307.23935 * 8 6 5 10 10 C 1.50693 * 109.47500 * 196.30609 * 9 8 6 11 11 H 1.08005 * 120.00102 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00355 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47005 * 60.00116 * 14 12 10 16 16 H 1.48505 * 109.46828 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47277 * 299.99876 * 14 12 10 18 18 C 1.46907 * 110.99791 * 71.19681 * 8 6 5 19 19 C 1.52996 * 109.47445 * 69.99905 * 18 8 6 20 20 C 1.47197 * 109.47146 * 179.97438 * 19 18 8 21 21 N 7.79607 * 140.03038 * 194.40494 * 2 1 3 22 22 C 1.53873 * 106.59750 * 23.60879 * 6 5 4 23 23 H 1.09003 * 109.47177 * 298.91611 * 1 2 3 24 24 H 1.08994 * 109.47187 * 58.91450 * 1 2 3 25 25 H 1.08994 * 109.47273 * 178.91671 * 1 2 3 26 26 H 1.08995 * 110.75655 * 274.94053 * 4 2 1 27 27 H 1.09001 * 110.75230 * 38.30706 * 4 2 1 28 28 H 1.09000 * 110.48737 * 80.74229 * 5 4 2 29 29 H 1.08998 * 110.48749 * 203.37894 * 5 4 2 30 30 H 1.08998 * 109.47058 * 316.30707 * 9 8 6 31 31 H 1.09006 * 109.47235 * 76.30207 * 9 8 6 32 32 H 0.97000 * 120.00403 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.46905 * 190.00164 * 18 8 6 34 34 H 1.09000 * 109.46518 * 309.99521 * 18 8 6 35 35 H 1.08999 * 109.46843 * 299.99923 * 19 18 8 36 36 H 1.09000 * 109.46819 * 59.99728 * 19 18 8 37 37 H 1.08998 * 110.03050 * 240.71547 * 22 6 5 38 38 H 1.09002 * 110.06876 * 119.30849 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7804 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3165 -1.5414 -0.7321 7 1 3.1692 -2.6146 -0.8530 8 7 4.4975 -1.1065 -1.4898 9 6 4.7967 0.3084 -1.2320 10 6 5.7321 0.8257 -2.2941 11 1 6.0709 0.1690 -3.0818 12 6 6.1564 2.1371 -2.2599 13 7 5.7451 2.9365 -1.2999 14 14 7.3165 2.7782 -3.5762 15 1 6.6759 2.6431 -4.9091 16 1 7.6189 4.2086 -3.3156 17 1 8.5765 1.9928 -3.5508 18 6 5.6587 -1.9539 -1.1870 19 6 5.4433 -3.3463 -1.7834 20 6 6.6071 -4.1952 -1.4805 21 7 7.5047 -4.8506 -1.2459 22 6 2.0699 -0.7804 -1.2162 23 1 -0.3634 0.4969 0.8996 24 1 -0.3633 0.5306 -0.8800 25 1 -0.3633 -1.0274 -0.0194 26 1 2.1251 -0.1355 2.1003 27 1 1.4581 -1.6582 1.4244 28 1 4.1898 -0.3696 0.8832 29 1 3.8316 -2.0705 1.3172 30 1 3.8717 0.8846 -1.2505 31 1 5.2671 0.4079 -0.2537 32 1 6.0433 3.8592 -1.2760 33 1 6.5555 -1.5088 -1.6180 34 1 5.7769 -2.0356 -0.1066 35 1 4.5465 -3.7913 -1.3523 36 1 5.3250 -3.2644 -2.8638 37 1 1.3176 -1.4842 -1.5721 38 1 2.3404 -0.0884 -2.0138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339054922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:16 Heat of formation + Delta-G solvation = -6.194321 kcal Electronic energy + Delta-G solvation = -17111.024414 eV Core-core repulsion = 14565.990601 eV Total energy + Delta-G solvation = -2545.033812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40034 -37.86180 -36.59129 -34.68129 -32.34773 -31.13987 -29.47830 -27.98527 -25.35969 -24.75970 -23.19690 -20.80182 -19.76936 -18.58251 -18.29071 -16.90884 -16.68412 -16.28622 -15.57985 -15.22303 -15.07329 -14.68830 -14.35889 -14.07081 -13.86260 -13.55391 -13.41093 -13.25567 -12.84875 -12.81088 -12.64647 -12.35128 -12.22537 -11.94402 -11.90145 -11.72524 -11.51816 -11.37437 -11.33047 -11.09211 -10.94275 -10.51512 -8.84642 -8.12847 -6.20902 1.43452 1.44801 1.52155 1.77655 1.85400 2.43860 2.99348 3.20034 3.58537 3.85255 3.91143 4.08653 4.23760 4.36683 4.54619 4.55348 4.69750 4.74932 4.82961 4.84687 4.88191 5.00532 5.06420 5.14734 5.19103 5.20367 5.24102 5.27732 5.42233 5.45508 5.54691 5.66801 5.71417 5.75137 6.19670 6.46419 6.62625 6.80150 6.97377 7.48081 8.96555 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.009988 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.182736 B = 2802.770228 C = 4522.938397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 H 0.036 0.964 4 C -0.106 4.106 5 C -0.164 4.164 6 C 0.074 3.926 7 H 0.112 0.888 8 N -0.527 5.527 9 C 0.215 3.785 10 C -0.519 4.519 11 H 0.064 0.936 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.957 3.043 15 H -0.267 1.267 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.066 3.934 19 C -0.011 4.011 20 C 0.242 3.758 21 N -0.502 5.502 22 C -0.107 4.107 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.016 0.984 31 H -0.036 1.036 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.097 -9.485 1.571 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 H 0.054 0.946 4 C -0.143 4.143 5 C -0.203 4.203 6 C -0.034 4.034 7 H 0.129 0.871 8 N -0.250 5.250 9 C 0.089 3.911 10 C -0.557 4.557 11 H 0.082 0.918 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.782 3.218 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.198 1.198 18 C -0.064 4.064 19 C -0.051 4.051 20 C -0.075 4.075 21 N -0.180 5.180 22 C -0.145 4.145 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.034 0.966 31 H -0.019 1.019 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.107 0.893 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.841 -10.341 1.458 13.683 hybrid contribution 0.891 1.510 0.378 1.794 sum -7.950 -8.831 1.836 12.023 Atomic orbital electron populations 1.21727 0.93282 1.02608 1.01468 1.21961 0.96650 0.97950 0.95592 0.94571 1.22432 0.95280 0.99987 0.96649 1.23078 0.98059 1.00777 0.98419 1.22616 0.90642 1.00393 0.89774 0.87066 1.62220 1.03694 1.03373 1.55677 1.19282 0.94778 0.84235 0.92847 1.21580 1.27197 0.95723 1.11241 0.91754 1.25789 0.98325 0.97451 0.97950 1.70073 1.46578 1.06474 1.34360 0.85629 0.79369 0.76926 0.79852 1.19206 1.21408 1.19782 1.21787 0.94901 0.92047 0.97700 1.19412 0.90054 0.90035 1.05579 1.29641 0.94052 0.92519 0.91244 1.81194 1.12674 1.12782 1.11353 1.22214 0.96315 0.98848 0.97144 0.92595 0.93100 0.90816 0.92812 0.89048 0.94316 0.90785 0.96641 1.01875 0.93070 0.92181 0.95342 0.84448 0.84891 0.89288 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.12 71.98 0.66 -2.21 16 2 C -0.10 -2.90 3.31 -9.72 -0.03 -2.93 16 3 H 0.04 1.30 7.92 -2.38 -0.02 1.28 16 4 C -0.11 -2.69 6.33 31.89 0.20 -2.48 16 5 C -0.16 -4.87 5.26 31.67 0.17 -4.70 16 6 C 0.07 2.12 2.85 45.64 0.13 2.25 16 7 H 0.11 2.33 6.34 -2.39 -0.02 2.32 16 8 N -0.53 -19.12 4.33 -871.29 -3.77 -22.89 16 9 C 0.21 10.46 3.54 85.56 0.30 10.77 16 10 C -0.52 -27.96 8.41 25.60 0.22 -27.75 16 11 H 0.06 3.37 7.64 -2.91 -0.02 3.34 16 12 C 0.00 0.14 5.46 84.65 0.46 0.61 16 13 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 14 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 C 0.07 2.10 4.67 86.30 0.40 2.51 16 19 C -0.01 -0.23 5.73 28.79 0.16 -0.07 16 20 C 0.24 6.49 15.43 89.44 1.38 7.87 16 21 N -0.50 -16.40 18.54 20.00 0.37 -16.03 16 22 C -0.11 -3.09 5.35 31.32 0.17 -2.92 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.80 8.06 -2.39 -0.02 1.78 16 28 H 0.04 1.49 5.59 -2.39 -0.01 1.48 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.02 0.83 6.01 -2.39 -0.01 0.81 16 31 H -0.04 -1.98 6.49 -2.38 -0.02 -2.00 16 32 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.06 2.29 7.10 -2.38 -0.02 2.27 16 34 H 0.03 0.92 7.27 -2.39 -0.02 0.90 16 35 H 0.14 2.07 6.53 -2.39 -0.02 2.06 16 36 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.09 2.00 7.81 -2.39 -0.02 1.98 16 38 H 0.05 1.68 6.86 -2.39 -0.02 1.66 16 Total: -1.00 -65.21 303.23 4.16 -61.05 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.03 Total: 6.12 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.22 Total: -19.06 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -3.11 Total: -93.98 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -65.21 4.16 -61.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339054922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.853 kcal (2) G-P(sol) polarization free energy of solvation -65.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds