Wall clock time and date at job start Sun Mar 29 2020 22:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29123 * 120.59610 * 2 1 4 4 S 1.69628 * 108.28372 * 179.97438 * 3 2 1 5 5 C 1.76595 * 95.44285 * 0.02562 * 4 3 2 6 6 N 1.33568 * 134.15438 * 179.97438 * 5 4 3 7 7 C 1.30260 * 121.73044 * 179.72573 * 6 5 4 8 8 N 1.36057 * 122.28116 * 0.61918 * 7 6 5 9 9 C 1.37184 * 119.57322 * 179.68133 * 8 7 6 10 10 H 1.07996 * 120.00394 * 150.40199 * 9 8 7 11 11 C 1.39040 * 119.99497 * 330.39710 * 9 8 7 12 12 N 1.31267 * 120.00425 * 342.70010 * 11 9 8 13 13 Si 1.86806 * 119.99662 * 162.69143 * 11 9 8 14 14 H 1.48503 * 109.46603 * 90.00397 * 13 11 9 15 15 H 1.48500 * 109.47151 * 210.00165 * 13 11 9 16 16 H 1.48494 * 109.47067 * 330.00643 * 13 11 9 17 17 C 1.34963 * 120.85649 * 359.40101 * 8 7 6 18 18 O 1.21810 * 120.99779 * 180.26098 * 17 8 7 19 19 C 1.39775 * 120.59854 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47191 * 270.02146 * 1 2 3 21 21 H 1.08996 * 109.47214 * 30.02419 * 1 2 3 22 22 H 1.09005 * 109.46702 * 150.01876 * 1 2 3 23 23 H 1.07995 * 118.85774 * 180.29560 * 7 6 5 24 24 H 0.97006 * 120.00360 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1643 1.1115 0.0000 4 16 3.8215 0.7497 0.0007 5 6 3.6103 -1.0035 0.0003 6 7 4.4504 -2.0419 0.0000 7 6 4.0201 -3.2713 0.0050 8 7 2.6943 -3.5772 -0.0017 9 6 2.3028 -4.8919 -0.0026 10 1 1.3668 -5.1770 0.4546 11 6 3.1110 -5.8575 -0.5923 12 7 4.0558 -5.4999 -1.4305 13 14 2.8522 -7.6636 -0.1917 14 1 1.8800 -8.2487 -1.1497 15 1 4.1463 -8.3844 -0.2974 16 1 2.3247 -7.7934 1.1903 17 6 1.7594 -2.6038 -0.0019 18 8 0.5718 -2.8747 -0.0031 19 6 2.2185 -1.2031 0.0005 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5136 23 1 4.7406 -4.0758 0.0094 24 1 4.6199 -6.1736 -1.8416 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339117268.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:37 Heat of formation + Delta-G solvation = 3.322975 kcal Electronic energy + Delta-G solvation = -14360.998689 eV Core-core repulsion = 11786.205254 eV Total energy + Delta-G solvation = -2574.793435 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.45719 -39.29130 -38.44464 -36.33854 -33.93485 -31.22056 -30.47341 -28.17054 -25.87327 -24.44145 -21.96681 -20.56221 -19.46704 -18.61885 -18.19473 -17.46656 -16.85002 -16.08076 -15.53565 -15.29720 -14.96764 -14.61301 -14.14850 -13.88162 -13.48757 -13.42144 -13.07929 -12.86088 -12.62373 -12.14168 -11.84214 -11.77570 -11.00305 -10.94046 -10.79985 -9.76933 -9.31299 -8.91175 -6.69689 -0.77866 0.13109 0.63749 0.88816 1.13745 1.37973 1.44759 1.58469 1.93042 2.31132 2.35715 2.88291 3.36966 3.57662 3.71663 4.17604 4.37386 4.62285 4.65835 4.69138 5.00813 5.13367 5.27293 5.70924 5.83182 6.12513 6.51076 6.96294 7.11855 8.09859 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.042081 B = 0.008446 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.226711 B = 3314.416579 C = 3885.874897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.197 3.803 3 N -0.492 5.492 4 S 0.243 5.757 5 C 0.097 3.903 6 N -0.536 5.536 7 C 0.370 3.630 8 N -0.343 5.343 9 C -0.366 4.366 10 H 0.115 0.885 11 C 0.024 3.976 12 N -0.854 5.854 13 Si 1.019 2.981 14 H -0.268 1.268 15 H -0.254 1.254 16 H -0.256 1.256 17 C 0.513 3.487 18 O -0.563 6.563 19 C -0.357 4.357 20 H 0.094 0.906 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.219 0.781 24 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 0.738 2.164 2.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.016 3.984 3 N -0.311 5.311 4 S 0.391 5.609 5 C -0.154 4.154 6 N -0.263 5.263 7 C 0.088 3.912 8 N -0.039 5.039 9 C -0.495 4.495 10 H 0.133 0.867 11 C -0.187 4.187 12 N -0.484 5.484 13 Si 0.837 3.163 14 H -0.193 1.193 15 H -0.177 1.177 16 H -0.179 1.179 17 C 0.311 3.689 18 O -0.444 6.444 19 C -0.378 4.378 20 H 0.112 0.888 21 H 0.114 0.886 22 H 0.095 0.905 23 H 0.235 0.765 24 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.030 2.817 2.002 4.008 hybrid contribution -1.506 -2.388 -0.230 2.833 sum 0.524 0.428 1.772 1.897 Atomic orbital electron populations 1.20719 0.85033 1.04213 1.04469 1.20903 0.99757 0.86323 0.91434 1.76232 1.00484 1.24309 1.30105 1.84221 1.09037 0.91429 1.76232 1.25060 0.91895 1.01508 0.96964 1.67584 1.34483 0.96427 1.27851 1.25344 0.84460 0.93572 0.87836 1.42905 1.06690 1.08966 1.45334 1.20555 1.10321 0.79425 1.39165 0.86690 1.26698 0.94037 1.06649 0.91319 1.69737 1.18198 1.39750 1.20738 0.84571 0.79328 0.72598 0.79818 1.19300 1.17746 1.17914 1.18186 0.86083 0.84690 0.79955 1.90650 1.16011 1.84093 1.53633 1.21524 0.94121 0.95095 1.27049 0.88791 0.88551 0.90519 0.76471 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.83 9.85 71.24 0.70 -2.13 14 2 C 0.20 8.09 6.70 43.33 0.29 8.38 14 3 N -0.49 -19.21 11.91 -50.22 -0.60 -19.80 14 4 S 0.24 9.08 23.91 -56.49 -1.35 7.73 14 5 C 0.10 4.33 7.96 85.01 0.68 5.01 14 6 N -0.54 -24.10 10.36 -192.69 -2.00 -26.10 14 7 C 0.37 16.90 10.25 180.01 1.85 18.75 14 8 N -0.34 -16.96 2.74 -473.51 -1.30 -18.26 14 9 C -0.37 -17.62 9.08 84.05 0.76 -16.86 14 10 H 0.12 5.64 7.58 -2.91 -0.02 5.62 14 11 C 0.02 1.02 4.98 84.97 0.42 1.44 14 12 N -0.85 -37.39 11.21 21.67 0.24 -37.15 14 13 Si 1.02 32.67 29.59 68.60 2.03 34.70 14 14 H -0.27 -8.69 7.11 99.48 0.71 -7.98 14 15 H -0.25 -7.44 7.11 99.48 0.71 -6.73 14 16 H -0.26 -8.08 7.11 99.48 0.71 -7.37 14 17 C 0.51 26.19 7.63 86.63 0.66 26.85 14 18 O -0.56 -30.09 14.93 -4.70 -0.07 -30.16 14 19 C -0.36 -16.58 6.07 -19.92 -0.12 -16.70 14 20 H 0.09 2.91 8.14 -2.39 -0.02 2.89 14 21 H 0.10 2.74 8.14 -2.39 -0.02 2.72 14 22 H 0.08 2.91 6.45 -2.38 -0.02 2.89 14 23 H 0.22 9.32 6.17 -2.91 -0.02 9.30 14 24 H 0.31 11.91 8.31 -92.70 -0.77 11.14 14 Total: -1.00 -55.28 233.27 3.45 -51.83 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.26 Total: 12.48 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 5.24 Total: 24.74 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -3.65 Total: -101.31 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.07 Total: -30.16 kcal Atomic # 14 Polarization: 32.67 SS G_CDS: 2.03 Total: 34.70 kcal Atomic # 16 Polarization: 9.08 SS G_CDS: -1.35 Total: 7.73 kcal Total: -55.28 3.45 -51.83 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339117268.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.153 kcal (2) G-P(sol) polarization free energy of solvation -55.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds