Wall clock time and date at job start Sun Mar 29 2020 21:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46960 * 2 1 4 4 C 1.36939 * 120.00048 * 265.78244 * 3 2 1 5 5 H 1.07996 * 120.00369 * 146.20893 * 4 3 2 6 6 C 1.38813 * 119.99634 * 326.21128 * 4 3 2 7 7 N 1.31623 * 120.00117 * 337.68584 * 6 4 3 8 8 Si 1.86798 * 119.99746 * 157.68603 * 6 4 3 9 9 H 1.48500 * 109.47387 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46959 * 120.00206 * 8 6 4 11 11 H 1.48506 * 109.47104 * 240.00088 * 8 6 4 12 12 C 1.46503 * 119.99932 * 85.78085 * 3 2 1 13 13 C 1.50704 * 109.46834 * 90.00236 * 12 3 2 14 14 N 1.30827 * 125.95971 * 275.30095 * 13 12 3 15 15 C 1.33241 * 109.83026 * 180.12580 * 14 13 12 16 16 C 1.50702 * 125.52622 * 179.85182 * 15 14 13 17 17 C 1.53001 * 117.49271 * 119.72032 * 16 15 14 18 18 C 1.52994 * 60.03142 * 107.50000 * 17 16 15 19 19 N 1.30710 * 108.94567 * 359.59145 * 15 14 13 20 20 N 1.34430 * 125.96249 * 94.97524 * 13 12 3 21 21 H 0.96999 * 126.82147 * 359.97438 * 20 13 12 22 22 H 1.09003 * 109.47030 * 300.00180 * 1 2 3 23 23 H 1.09002 * 109.47078 * 60.00348 * 1 2 3 24 24 H 1.08993 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47225 * 239.99737 * 2 1 3 26 26 H 1.09002 * 109.47078 * 119.99652 * 2 1 3 27 27 H 0.97001 * 119.99779 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47263 * 329.99818 * 12 3 2 29 29 H 1.09006 * 109.46642 * 209.99622 * 12 3 2 30 30 H 1.08994 * 115.54946 * 334.05002 * 16 15 14 31 31 H 1.09007 * 117.49680 * 215.00101 * 17 16 15 32 32 H 1.08991 * 117.50293 * 359.97438 * 17 16 15 33 33 H 1.09002 * 117.50271 * 107.50265 * 18 17 16 34 34 H 1.09000 * 117.49791 * 252.51711 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3288 1.9977 -1.1827 5 1 2.1595 3.0579 -1.2998 6 6 2.8610 1.2599 -2.2312 7 7 3.4700 0.1182 -1.9899 8 14 2.7128 1.8872 -3.9844 9 1 1.9902 3.1845 -3.9866 10 1 4.0692 2.0757 -4.5589 11 1 1.9619 0.9004 -4.8015 12 6 2.1745 2.1030 1.2653 13 6 3.5640 1.8782 1.8036 14 7 3.9523 0.8592 2.5266 15 6 5.2437 0.9858 2.8293 16 6 6.0499 0.0131 3.6508 17 6 7.2594 -0.6434 2.9822 18 6 7.4669 0.4307 4.0518 19 7 5.6992 2.0875 2.2935 20 7 4.6223 2.6865 1.6196 21 1 4.6390 3.5177 1.1200 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8416 -0.3975 -2.7226 28 1 1.4423 1.7371 1.9851 29 1 2.0179 3.1686 1.0974 30 1 5.4812 -0.5859 4.3620 31 1 7.4865 -1.6744 3.2537 32 1 7.4718 -0.3721 1.9482 33 1 7.8306 0.1066 5.0269 34 1 7.8156 1.4092 3.7214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347395139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:32 Heat of formation + Delta-G solvation = 124.417794 kcal Electronic energy + Delta-G solvation = -16764.301709 eV Core-core repulsion = 14121.391319 eV Total energy + Delta-G solvation = -2642.910390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28969 -36.92242 -35.95819 -31.93104 -31.58857 -30.82166 -29.02254 -26.12361 -23.97377 -23.57519 -22.17417 -21.00866 -19.79210 -19.21788 -17.19205 -16.74501 -15.34090 -15.02187 -14.75173 -14.38354 -13.86971 -13.70643 -13.16222 -12.35422 -12.23593 -11.88345 -11.47070 -11.38575 -11.20942 -11.03976 -10.95789 -10.69531 -10.62573 -10.28993 -10.14059 -10.06248 -9.63717 -9.21567 -9.11913 -8.64313 -8.61059 -6.84804 -5.94098 -3.51076 2.37478 3.25742 3.35260 3.36997 3.42797 3.50092 4.20754 4.36213 4.55474 5.05022 5.16800 5.20947 5.33500 5.42403 5.50948 5.79174 5.86489 5.97842 6.23251 6.30090 6.33286 6.34527 6.47415 6.55391 6.66148 6.92768 7.05104 7.18857 7.26324 7.62897 7.74979 7.87823 8.32911 8.93983 9.01234 9.62092 10.18327 11.04770 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.007396 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.831951 B = 3785.155291 C = 4127.639064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 N -0.562 5.562 4 C -0.274 4.274 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.873 5.873 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.285 1.285 12 C 0.207 3.793 13 C 0.297 3.703 14 N -0.547 5.547 15 C 0.247 3.753 16 C -0.061 4.061 17 C -0.161 4.161 18 C -0.165 4.165 19 N -0.341 5.341 20 N -0.478 5.478 21 H 0.434 0.566 22 H 0.034 0.966 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.033 0.967 27 H 0.257 0.743 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 1.311 8.012 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 N -0.281 5.281 4 C -0.404 4.404 5 H 0.085 0.915 6 C -0.187 4.187 7 N -0.514 5.514 8 Si 0.729 3.271 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.211 1.211 12 C 0.076 3.924 13 C 0.017 3.983 14 N -0.277 5.277 15 C -0.035 4.035 16 C -0.082 4.082 17 C -0.199 4.199 18 C -0.203 4.203 19 N -0.172 5.172 20 N -0.194 5.194 21 H 0.279 0.721 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.133 1.116 8.064 8.416 hybrid contribution 0.000 0.736 -1.521 1.689 sum 2.133 1.852 6.543 7.127 Atomic orbital electron populations 1.22260 1.00362 0.98976 1.00422 1.21055 0.89916 0.85436 1.02615 1.44147 1.71800 1.12554 0.99557 1.19170 1.37693 0.94415 0.89149 0.91538 1.25225 0.96246 0.97671 0.99510 1.70043 1.34907 1.15417 1.31032 0.86282 0.77486 0.78652 0.84652 1.19878 1.21665 1.21147 1.19953 0.85089 0.97782 0.89560 1.26643 0.95187 0.85954 0.90553 1.70240 1.11808 1.24590 1.21018 1.22939 0.90389 0.92890 0.97314 1.19942 0.88429 0.99042 1.00793 1.22985 1.00371 0.97834 0.98748 1.22993 0.97421 1.00450 0.99474 1.77646 1.10377 1.12477 1.16686 1.47869 1.07012 1.22253 1.42293 0.72138 0.94644 0.93275 0.94453 0.88491 0.94820 0.93319 0.90557 0.91440 0.85737 0.88194 0.88559 0.88409 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.24 37.16 0.38 -2.78 16 2 C 0.14 3.17 5.97 -4.04 -0.02 3.15 16 3 N -0.56 -13.27 2.44 -174.60 -0.43 -13.70 16 4 C -0.27 -7.01 9.49 -15.06 -0.14 -7.15 16 5 H 0.07 1.65 7.92 -52.49 -0.42 1.23 16 6 C 0.02 0.42 4.93 -17.43 -0.09 0.33 16 7 N -0.87 -24.74 11.32 55.49 0.63 -24.11 16 8 Si 0.90 20.79 29.61 -169.99 -5.03 15.76 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.21 4.16 6.31 -5.19 -0.03 4.12 16 13 C 0.30 6.35 7.82 -155.70 -1.22 5.13 16 14 N -0.55 -12.23 11.19 -8.16 -0.09 -12.32 16 15 C 0.25 5.11 7.69 -156.85 -1.21 3.90 16 16 C -0.06 -1.00 6.33 -91.73 -0.58 -1.58 16 17 C -0.16 -2.32 10.23 -26.73 -0.27 -2.59 16 18 C -0.17 -2.19 10.14 -26.70 -0.27 -2.46 16 19 N -0.34 -7.11 12.34 32.42 0.40 -6.71 16 20 N -0.48 -9.64 7.45 32.62 0.24 -9.40 16 21 H 0.43 7.54 8.96 -182.34 -1.63 5.90 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.10 2.59 5.32 -51.93 -0.28 2.32 16 26 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 29 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 30 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.45 7.88 -51.93 -0.41 1.04 16 LS Contribution 294.41 15.07 4.44 4.44 Total: -1.00 -30.71 294.41 -9.38 -40.10 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.09 Total: 5.86 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.45 Total: 0.07 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: 0.75 Total: -66.23 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.71 -9.38 -40.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347395139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.513 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds