Wall clock time and date at job start Sun Mar 29 2020 21:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46960 * 2 1 4 4 C 1.36939 * 120.00048 * 265.78244 * 3 2 1 5 5 H 1.07996 * 120.00369 * 146.20893 * 4 3 2 6 6 C 1.38813 * 119.99634 * 326.21128 * 4 3 2 7 7 N 1.31623 * 120.00117 * 337.68584 * 6 4 3 8 8 Si 1.86798 * 119.99746 * 157.68603 * 6 4 3 9 9 H 1.48500 * 109.47387 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46959 * 120.00206 * 8 6 4 11 11 H 1.48506 * 109.47104 * 240.00088 * 8 6 4 12 12 C 1.46503 * 119.99932 * 85.78085 * 3 2 1 13 13 C 1.50704 * 109.46834 * 90.00236 * 12 3 2 14 14 N 1.30827 * 125.95971 * 275.30095 * 13 12 3 15 15 C 1.33241 * 109.83026 * 180.12580 * 14 13 12 16 16 C 1.50702 * 125.52622 * 179.85182 * 15 14 13 17 17 C 1.53001 * 117.49271 * 119.72032 * 16 15 14 18 18 C 1.52994 * 60.03142 * 107.50000 * 17 16 15 19 19 N 1.30710 * 108.94567 * 359.59145 * 15 14 13 20 20 N 1.34430 * 125.96249 * 94.97524 * 13 12 3 21 21 H 0.96999 * 126.82147 * 359.97438 * 20 13 12 22 22 H 1.09003 * 109.47030 * 300.00180 * 1 2 3 23 23 H 1.09002 * 109.47078 * 60.00348 * 1 2 3 24 24 H 1.08993 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47225 * 239.99737 * 2 1 3 26 26 H 1.09002 * 109.47078 * 119.99652 * 2 1 3 27 27 H 0.97001 * 119.99779 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47263 * 329.99818 * 12 3 2 29 29 H 1.09006 * 109.46642 * 209.99622 * 12 3 2 30 30 H 1.08994 * 115.54946 * 334.05002 * 16 15 14 31 31 H 1.09007 * 117.49680 * 215.00101 * 17 16 15 32 32 H 1.08991 * 117.50293 * 359.97438 * 17 16 15 33 33 H 1.09002 * 117.50271 * 107.50265 * 18 17 16 34 34 H 1.09000 * 117.49791 * 252.51711 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3288 1.9977 -1.1827 5 1 2.1595 3.0579 -1.2998 6 6 2.8610 1.2599 -2.2312 7 7 3.4700 0.1182 -1.9899 8 14 2.7128 1.8872 -3.9844 9 1 1.9902 3.1845 -3.9866 10 1 4.0692 2.0757 -4.5589 11 1 1.9619 0.9004 -4.8015 12 6 2.1745 2.1030 1.2653 13 6 3.5640 1.8782 1.8036 14 7 3.9523 0.8592 2.5266 15 6 5.2437 0.9858 2.8293 16 6 6.0499 0.0131 3.6508 17 6 7.2594 -0.6434 2.9822 18 6 7.4669 0.4307 4.0518 19 7 5.6992 2.0875 2.2935 20 7 4.6223 2.6865 1.6196 21 1 4.6390 3.5177 1.1200 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8416 -0.3975 -2.7226 28 1 1.4423 1.7371 1.9851 29 1 2.0179 3.1686 1.0974 30 1 5.4812 -0.5859 4.3620 31 1 7.4865 -1.6744 3.2537 32 1 7.4718 -0.3721 1.9482 33 1 7.8306 0.1066 5.0269 34 1 7.8156 1.4092 3.7214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347395139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:32 Heat of formation + Delta-G solvation = 106.435577 kcal Electronic energy + Delta-G solvation = -16765.081476 eV Core-core repulsion = 14121.391319 eV Total energy + Delta-G solvation = -2643.690157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.89352 -38.22353 -37.66835 -33.80723 -33.21130 -32.51477 -30.73684 -27.91375 -25.38435 -25.36179 -23.27947 -22.74790 -21.49992 -20.65491 -18.83026 -18.59125 -16.99216 -16.52728 -16.42587 -15.76625 -15.63258 -15.42214 -14.74269 -14.08184 -13.87935 -13.27999 -13.22808 -12.90561 -12.80554 -12.63069 -12.41531 -12.37765 -12.08171 -11.93561 -11.82030 -11.47176 -11.42970 -10.86251 -10.72942 -10.59009 -10.17278 -8.77641 -7.91029 -5.51079 0.76755 1.42778 1.47500 1.56508 1.88909 1.96244 2.47027 2.94742 3.16012 3.26104 3.69477 3.77372 3.96948 4.01857 4.13969 4.38438 4.61976 4.75134 4.76653 4.80734 4.91230 4.96369 4.99703 5.15224 5.23228 5.25946 5.46589 5.52640 5.62300 5.63699 5.88483 6.32677 6.37904 7.05313 7.33060 7.72942 8.25656 9.05844 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.007396 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.831951 B = 3785.155291 C = 4127.639064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 N -0.574 5.574 4 C -0.270 4.270 5 H 0.076 0.924 6 C -0.036 4.036 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.259 1.259 10 H -0.299 1.299 11 H -0.290 1.290 12 C 0.208 3.792 13 C 0.288 3.712 14 N -0.573 5.573 15 C 0.236 3.764 16 C -0.090 4.090 17 C -0.159 4.159 18 C -0.138 4.138 19 N -0.355 5.355 20 N -0.477 5.477 21 H 0.444 0.556 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.020 0.980 27 H 0.249 0.751 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 1.895 9.039 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 N -0.294 5.294 4 C -0.401 4.401 5 H 0.094 0.906 6 C -0.235 4.235 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.182 1.182 10 H -0.227 1.227 11 H -0.217 1.217 12 C 0.077 3.923 13 C 0.007 3.993 14 N -0.303 5.303 15 C -0.046 4.046 16 C -0.111 4.111 17 C -0.198 4.198 18 C -0.175 4.175 19 N -0.185 5.185 20 N -0.194 5.194 21 H 0.290 0.710 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.857 1.740 9.099 9.448 hybrid contribution 0.103 0.575 -1.742 1.837 sum 1.959 2.314 7.357 7.958 Atomic orbital electron populations 1.22069 0.97179 1.00389 1.00884 1.20924 0.92369 0.85327 1.00270 1.44271 1.72213 1.12504 1.00392 1.19500 1.35873 0.94746 0.89935 0.90608 1.25908 0.96685 0.98054 1.02804 1.70200 1.36997 1.17029 1.31409 0.85342 0.76752 0.78522 0.80563 1.18245 1.22671 1.21689 1.20138 0.84786 0.98916 0.88411 1.26752 0.95702 0.86074 0.90751 1.70244 1.12988 1.25224 1.21871 1.23788 0.90288 0.93359 0.97173 1.20249 0.89476 0.99642 1.01692 1.23037 0.99091 0.99900 0.97734 1.23080 0.94350 0.99417 1.00672 1.77605 1.10742 1.12927 1.17256 1.47858 1.06721 1.22601 1.42236 0.70965 0.92694 0.94103 0.92642 0.91904 0.96128 0.94145 0.88841 0.88813 0.84199 0.85181 0.91367 0.84566 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 10.24 71.98 0.74 -4.77 16 2 C 0.14 6.41 5.97 86.38 0.52 6.93 16 3 N -0.57 -26.72 2.44 -706.32 -1.72 -28.44 16 4 C -0.27 -13.60 9.49 84.03 0.80 -12.81 16 5 H 0.08 3.62 7.92 -2.91 -0.02 3.60 16 6 C -0.04 -1.94 4.93 84.86 0.42 -1.52 16 7 N -0.91 -52.98 11.32 21.65 0.25 -52.73 16 8 Si 0.96 42.97 29.61 68.60 2.03 45.00 16 9 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 10 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 12 C 0.21 8.02 6.31 85.63 0.54 8.56 16 13 C 0.29 12.15 7.82 138.23 1.08 13.23 16 14 N -0.57 -25.52 11.19 -179.72 -2.01 -27.53 16 15 C 0.24 9.69 7.69 138.63 1.07 10.76 16 16 C -0.09 -2.81 6.33 -11.52 -0.07 -2.88 16 17 C -0.16 -4.36 10.23 30.59 0.31 -4.04 16 18 C -0.14 -3.32 10.14 30.62 0.31 -3.01 16 19 N -0.35 -14.71 12.34 -51.33 -0.63 -15.34 16 20 N -0.48 -19.03 7.45 -50.71 -0.38 -19.41 16 21 H 0.44 15.15 8.96 -213.10 -1.91 13.24 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 3.44 5.32 -2.39 -0.01 3.43 16 26 H 0.02 0.99 8.10 -2.39 -0.02 0.97 16 27 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.09 3.27 8.07 -2.39 -0.02 3.25 16 29 H 0.09 3.09 8.04 -2.38 -0.02 3.08 16 30 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 31 H 0.13 2.73 8.14 -2.38 -0.02 2.72 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 2.38 7.88 -2.39 -0.02 2.37 16 Total: -1.00 -66.40 294.41 2.43 -63.97 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.81 Total: 24.05 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 5.71 Total: 10.44 kcal Atomic # 7 Polarization: -138.97 SS G_CDS: -4.50 Total: -143.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -66.40 2.43 -63.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347395139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.403 kcal (2) G-P(sol) polarization free energy of solvation -66.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds