Wall clock time and date at job start Sun Mar 29 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47374 * 2 1 4 4 C 1.53000 * 109.47184 * 239.99728 * 2 1 3 5 5 C 1.53003 * 109.47121 * 59.99854 * 4 2 1 6 6 C 1.47200 * 109.47331 * 180.02562 * 5 4 2 7 7 N 4.86669 * 100.28888 * 255.11977 * 2 1 3 8 8 C 1.53007 * 109.47194 * 120.00011 * 2 1 3 9 9 N 1.46497 * 109.46610 * 299.99643 * 8 2 1 10 10 C 1.36936 * 120.00333 * 269.99724 * 9 8 2 11 11 H 1.07998 * 120.00202 * 141.14222 * 10 9 8 12 12 C 1.38812 * 119.99508 * 321.14503 * 10 9 8 13 13 N 1.31624 * 119.99665 * 157.87737 * 12 10 9 14 14 Si 1.86797 * 120.00503 * 337.87691 * 12 10 9 15 15 H 1.48499 * 109.47120 * 95.52906 * 14 12 10 16 16 H 1.48503 * 109.47126 * 215.53535 * 14 12 10 17 17 H 1.48498 * 109.46953 * 335.53153 * 14 12 10 18 18 C 1.46501 * 119.99974 * 90.00213 * 9 8 2 19 19 C 1.53002 * 117.49918 * 183.25350 * 18 9 8 20 20 C 1.52999 * 60.00017 * 252.51145 * 19 18 9 21 21 H 1.09008 * 109.47070 * 300.00325 * 1 2 3 22 22 H 1.09008 * 109.47334 * 59.99849 * 1 2 3 23 23 H 1.08999 * 109.47569 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47023 * 180.02562 * 3 2 1 25 25 H 1.09008 * 109.46763 * 299.99606 * 3 2 1 26 26 H 1.08995 * 109.47262 * 60.00136 * 3 2 1 27 27 H 1.08996 * 109.47762 * 180.02562 * 4 2 1 28 28 H 1.09008 * 109.47306 * 300.00446 * 4 2 1 29 29 H 1.09001 * 109.47469 * 300.00580 * 5 4 2 30 30 H 1.08999 * 109.46529 * 60.00368 * 5 4 2 31 31 H 1.08995 * 109.46881 * 179.97438 * 8 2 1 32 32 H 1.08999 * 109.46842 * 59.99580 * 8 2 1 33 33 H 0.97007 * 119.99942 * 179.97438 * 13 12 10 34 34 H 1.08998 * 115.54901 * 328.96951 * 18 9 8 35 35 H 1.08993 * 117.50041 * 0.02562 * 19 18 9 36 36 H 1.09004 * 117.49404 * 145.02383 * 19 18 9 37 37 H 1.09005 * 117.49610 * 252.50699 * 20 19 18 38 38 H 1.08996 * 117.52138 * 107.48458 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -0.0001 -2.4985 6 6 2.0200 -0.6944 -3.7004 7 7 2.3992 -1.2297 -4.6278 8 6 2.0400 -0.7213 1.2493 9 7 1.5517 -0.0306 2.4454 10 6 2.2917 0.9769 3.0044 11 1 1.7994 1.8525 3.4010 12 6 3.6747 0.8726 3.0613 13 7 4.4122 1.9567 3.1776 14 14 4.4894 -0.8060 2.9727 15 1 4.8915 -1.0878 1.5712 16 1 5.6912 -0.8196 3.8449 17 1 3.5330 -1.8452 3.4317 18 6 0.2716 -0.4177 3.0435 19 6 -0.2200 0.3914 4.2455 20 6 0.3035 -1.0325 4.4442 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 3.1299 -0.7218 -1.2491 28 1 1.6765 -1.7490 -1.2492 29 1 0.4399 0.0000 -2.4985 30 1 1.8933 1.0275 -2.4985 31 1 3.1299 -0.7216 1.2490 32 1 1.6765 -1.7489 1.2493 33 1 5.3787 1.8838 3.2177 34 1 -0.4789 -0.7913 2.3469 35 1 0.4087 1.2119 4.5909 36 1 -1.2943 0.5503 4.3397 37 1 -0.4264 -1.8102 4.6693 38 1 1.2769 -1.1493 4.9205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352735445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:37 Heat of formation + Delta-G solvation = 63.868328 kcal Electronic energy + Delta-G solvation = -17513.529609 eV Core-core repulsion = 14971.533941 eV Total energy + Delta-G solvation = -2541.995668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.58473 -36.90115 -35.84802 -33.19932 -31.43398 -29.79111 -26.73836 -26.21185 -24.44475 -23.23956 -21.48546 -19.64961 -18.35345 -17.56615 -16.25454 -15.48030 -15.38616 -15.13623 -14.05278 -13.90169 -13.69021 -13.41582 -12.89889 -12.58889 -12.41552 -12.29329 -12.08750 -11.76688 -11.49849 -11.13578 -11.05574 -10.81849 -10.67464 -10.52124 -10.38900 -10.12942 -10.11952 -9.80577 -9.65178 -9.40280 -9.34684 -8.49676 -6.69914 -6.04127 -3.44897 2.81787 2.84465 3.27375 3.45098 3.50742 4.07990 4.48390 4.76778 4.86986 5.10802 5.13966 5.28531 5.44270 5.54482 5.66914 5.76000 5.78753 5.97873 6.06551 6.08258 6.10961 6.17452 6.29951 6.36536 6.41955 6.47777 6.62961 6.69173 6.74856 6.81226 6.92132 7.04941 7.10934 7.46881 7.62540 8.03149 8.36877 8.96855 9.67750 10.08825 11.10569 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.008834 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.557984 B = 3168.657601 C = 3780.500733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 C -0.128 4.128 4 C -0.107 4.107 5 C -0.032 4.032 6 C 0.214 3.786 7 N -0.457 5.457 8 C 0.150 3.850 9 N -0.569 5.569 10 C -0.261 4.261 11 H 0.082 0.918 12 C 0.043 3.957 13 N -0.895 5.895 14 Si 0.868 3.132 15 H -0.285 1.285 16 H -0.303 1.303 17 H -0.267 1.267 18 C 0.120 3.880 19 C -0.189 4.189 20 C -0.228 4.228 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 -3.251 -5.068 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 C -0.185 4.185 4 C -0.147 4.147 5 C -0.072 4.072 6 C -0.103 4.103 7 N -0.134 5.134 8 C 0.025 3.975 9 N -0.287 5.287 10 C -0.390 4.390 11 H 0.100 0.900 12 C -0.158 4.158 13 N -0.536 5.536 14 Si 0.698 3.302 15 H -0.213 1.213 16 H -0.231 1.231 17 H -0.192 1.192 18 C 0.012 3.988 19 C -0.227 4.227 20 C -0.268 4.268 21 H 0.088 0.912 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.472 -3.953 -6.451 10.633 hybrid contribution 0.582 -0.770 0.471 1.074 sum -6.890 -4.723 -5.980 10.273 Atomic orbital electron populations 1.21956 0.95285 1.00549 1.01810 1.21109 0.95482 0.97460 0.94078 1.21792 1.00882 0.94406 1.01450 1.21638 1.01432 0.99149 0.92457 1.19594 1.02341 0.99481 0.85787 1.29554 0.93002 0.93397 0.94392 1.81178 1.09798 1.10205 1.12240 1.21184 0.97861 0.93283 0.85214 1.43616 1.19571 1.39979 1.25520 1.18617 0.88007 0.95640 1.36693 0.90047 1.25443 0.96583 0.95956 0.97816 1.69852 1.05275 1.27266 1.51163 0.87077 0.78800 0.87569 0.76765 1.21342 1.23135 1.19211 1.21289 0.90272 1.00310 0.86966 1.23044 0.99000 0.95639 1.04997 1.23380 1.01772 0.95218 1.06468 0.91162 0.93653 0.93830 0.93210 0.95048 0.89605 0.91347 0.91673 0.87292 0.86956 0.92677 0.94231 0.92731 0.88756 0.87949 0.90654 0.91035 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 6.99 37.15 0.26 -1.55 16 2 C -0.08 -1.20 0.62 -154.51 -0.10 -1.29 16 3 C -0.13 -2.18 7.52 37.16 0.28 -1.90 16 4 C -0.11 -1.37 4.23 -26.73 -0.11 -1.49 16 5 C -0.03 -0.33 5.00 -29.52 -0.15 -0.48 16 6 C 0.21 2.74 15.43 -20.76 -0.32 2.42 16 7 N -0.46 -7.11 18.54 42.15 0.78 -6.33 16 8 C 0.15 2.85 3.64 -4.04 -0.01 2.84 16 9 N -0.57 -11.84 1.90 -165.66 -0.31 -12.16 16 10 C -0.26 -6.45 6.77 -15.06 -0.10 -6.55 16 11 H 0.08 2.21 6.87 -52.49 -0.36 1.85 16 12 C 0.04 1.14 5.30 -17.43 -0.09 1.05 16 13 N -0.90 -25.42 13.97 55.49 0.78 -24.65 16 14 Si 0.87 21.10 25.09 -169.99 -4.26 16.83 16 15 H -0.29 -6.75 6.68 56.52 0.38 -6.37 16 16 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.12 2.20 5.26 -67.93 -0.36 1.84 16 19 C -0.19 -3.35 9.80 -26.73 -0.26 -3.62 16 20 C -0.23 -4.13 10.36 -26.73 -0.28 -4.41 16 21 H 0.07 1.04 5.99 -51.92 -0.31 0.73 16 22 H 0.04 0.49 6.43 -51.92 -0.33 0.15 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.43 6.43 -51.92 -0.33 0.09 16 26 H 0.09 1.74 6.29 -51.93 -0.33 1.42 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.11 0.91 6.43 -51.93 -0.33 0.57 16 30 H 0.11 1.07 6.43 -51.93 -0.33 0.74 16 31 H 0.06 1.19 3.43 -51.93 -0.18 1.01 16 32 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.09 1.50 6.57 -51.93 -0.34 1.16 16 35 H 0.10 2.07 6.45 -51.93 -0.33 1.74 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 296.00 15.07 4.46 4.46 Total: -1.00 -28.21 296.00 -5.53 -33.74 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.73 Total: 1.24 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.24 Total: -13.15 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 1.24 Total: -43.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.26 Total: 16.83 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.21 -5.53 -33.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352735445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.605 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds