Wall clock time and date at job start Sun Mar 29 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47374 * 2 1 4 4 C 1.53000 * 109.47184 * 239.99728 * 2 1 3 5 5 C 1.53003 * 109.47121 * 59.99854 * 4 2 1 6 6 C 1.47200 * 109.47331 * 180.02562 * 5 4 2 7 7 N 4.86669 * 100.28888 * 255.11977 * 2 1 3 8 8 C 1.53007 * 109.47194 * 120.00011 * 2 1 3 9 9 N 1.46497 * 109.46610 * 299.99643 * 8 2 1 10 10 C 1.36936 * 120.00333 * 269.99724 * 9 8 2 11 11 H 1.07998 * 120.00202 * 141.14222 * 10 9 8 12 12 C 1.38812 * 119.99508 * 321.14503 * 10 9 8 13 13 N 1.31624 * 119.99665 * 157.87737 * 12 10 9 14 14 Si 1.86797 * 120.00503 * 337.87691 * 12 10 9 15 15 H 1.48499 * 109.47120 * 95.52906 * 14 12 10 16 16 H 1.48503 * 109.47126 * 215.53535 * 14 12 10 17 17 H 1.48498 * 109.46953 * 335.53153 * 14 12 10 18 18 C 1.46501 * 119.99974 * 90.00213 * 9 8 2 19 19 C 1.53002 * 117.49918 * 183.25350 * 18 9 8 20 20 C 1.52999 * 60.00017 * 252.51145 * 19 18 9 21 21 H 1.09008 * 109.47070 * 300.00325 * 1 2 3 22 22 H 1.09008 * 109.47334 * 59.99849 * 1 2 3 23 23 H 1.08999 * 109.47569 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47023 * 180.02562 * 3 2 1 25 25 H 1.09008 * 109.46763 * 299.99606 * 3 2 1 26 26 H 1.08995 * 109.47262 * 60.00136 * 3 2 1 27 27 H 1.08996 * 109.47762 * 180.02562 * 4 2 1 28 28 H 1.09008 * 109.47306 * 300.00446 * 4 2 1 29 29 H 1.09001 * 109.47469 * 300.00580 * 5 4 2 30 30 H 1.08999 * 109.46529 * 60.00368 * 5 4 2 31 31 H 1.08995 * 109.46881 * 179.97438 * 8 2 1 32 32 H 1.08999 * 109.46842 * 59.99580 * 8 2 1 33 33 H 0.97007 * 119.99942 * 179.97438 * 13 12 10 34 34 H 1.08998 * 115.54901 * 328.96951 * 18 9 8 35 35 H 1.08993 * 117.50041 * 0.02562 * 19 18 9 36 36 H 1.09004 * 117.49404 * 145.02383 * 19 18 9 37 37 H 1.09005 * 117.49610 * 252.50699 * 20 19 18 38 38 H 1.08996 * 117.52138 * 107.48458 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -0.0001 -2.4985 6 6 2.0200 -0.6944 -3.7004 7 7 2.3992 -1.2297 -4.6278 8 6 2.0400 -0.7213 1.2493 9 7 1.5517 -0.0306 2.4454 10 6 2.2917 0.9769 3.0044 11 1 1.7994 1.8525 3.4010 12 6 3.6747 0.8726 3.0613 13 7 4.4122 1.9567 3.1776 14 14 4.4894 -0.8060 2.9727 15 1 4.8915 -1.0878 1.5712 16 1 5.6912 -0.8196 3.8449 17 1 3.5330 -1.8452 3.4317 18 6 0.2716 -0.4177 3.0435 19 6 -0.2200 0.3914 4.2455 20 6 0.3035 -1.0325 4.4442 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9563 0.8899 27 1 3.1299 -0.7218 -1.2491 28 1 1.6765 -1.7490 -1.2492 29 1 0.4399 0.0000 -2.4985 30 1 1.8933 1.0275 -2.4985 31 1 3.1299 -0.7216 1.2490 32 1 1.6765 -1.7489 1.2493 33 1 5.3787 1.8838 3.2177 34 1 -0.4789 -0.7913 2.3469 35 1 0.4087 1.2119 4.5909 36 1 -1.2943 0.5503 4.3397 37 1 -0.4264 -1.8102 4.6693 38 1 1.2769 -1.1493 4.9205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352735445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:36 Heat of formation + Delta-G solvation = 48.099031 kcal Electronic energy + Delta-G solvation = -17514.213417 eV Core-core repulsion = 14971.533941 eV Total energy + Delta-G solvation = -2542.679476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93401 -38.16124 -37.07704 -34.88532 -33.08711 -31.08760 -28.05774 -27.58800 -25.99978 -24.62851 -22.94469 -21.30682 -19.66584 -18.64349 -17.94756 -17.13740 -16.98879 -16.11919 -15.53884 -15.22878 -15.04520 -14.71079 -14.35149 -14.15534 -13.74252 -13.63241 -13.47014 -13.10519 -12.73207 -12.66363 -12.58888 -12.28647 -12.10910 -11.84282 -11.79011 -11.64328 -11.50941 -11.36377 -11.07468 -10.92976 -10.76351 -10.48012 -8.44979 -8.10629 -5.44101 1.30316 1.43179 1.51474 1.81923 1.86987 2.46952 3.05027 3.17998 3.36201 3.45319 4.08250 4.11576 4.34165 4.39725 4.42412 4.50977 4.54676 4.63817 4.77187 4.86542 4.92768 5.01989 5.09481 5.13303 5.19817 5.22174 5.24355 5.40239 5.45734 5.51951 5.56734 5.61358 5.86850 5.99600 6.08442 6.33156 6.66016 7.13155 7.77348 8.18189 9.08697 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.008834 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.557984 B = 3168.657601 C = 3780.500733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.121 4.121 4 C -0.103 4.103 5 C -0.023 4.023 6 C 0.239 3.761 7 N -0.509 5.509 8 C 0.140 3.860 9 N -0.579 5.579 10 C -0.221 4.221 11 H 0.048 0.952 12 C -0.009 4.009 13 N -0.944 5.944 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.322 1.322 17 H -0.263 1.263 18 C 0.114 3.886 19 C -0.186 4.186 20 C -0.225 4.225 21 H 0.051 0.949 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.015 0.985 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.025 0.975 32 H 0.060 0.940 33 H 0.257 0.743 34 H 0.132 0.868 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 -4.754 -6.525 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 C -0.178 4.178 4 C -0.143 4.143 5 C -0.062 4.062 6 C -0.077 4.077 7 N -0.187 5.187 8 C 0.016 3.984 9 N -0.298 5.298 10 C -0.351 4.351 11 H 0.066 0.934 12 C -0.205 4.205 13 N -0.589 5.589 14 Si 0.749 3.251 15 H -0.205 1.205 16 H -0.251 1.251 17 H -0.188 1.188 18 C 0.006 3.994 19 C -0.224 4.224 20 C -0.266 4.266 21 H 0.070 0.930 22 H 0.095 0.905 23 H 0.082 0.918 24 H 0.035 0.965 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.162 0.838 30 H 0.142 0.858 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.385 -5.494 -7.922 14.170 hybrid contribution 1.366 -0.263 0.973 1.698 sum -9.019 -5.757 -6.949 12.758 Atomic orbital electron populations 1.21918 0.92680 1.02097 1.02525 1.20932 0.97423 0.95551 0.93326 1.21685 0.98677 0.96111 1.01359 1.21527 1.00435 1.00056 0.92248 1.19705 1.04207 0.99126 0.83209 1.29894 0.91547 0.92193 0.94060 1.81216 1.11588 1.11890 1.14030 1.21323 0.96323 0.94667 0.86122 1.43700 1.20105 1.39358 1.26616 1.18385 0.87763 0.95217 1.33734 0.93407 1.25853 0.97383 0.97821 0.99440 1.69963 1.05037 1.28862 1.55043 0.86244 0.77362 0.84828 0.76631 1.20486 1.25128 1.18777 1.21628 0.89504 1.00563 0.87679 1.23010 1.00410 0.94394 1.04612 1.23369 1.01099 0.96333 1.05796 0.93005 0.90515 0.91799 0.96525 0.91259 0.93500 0.93198 0.90063 0.83845 0.85799 0.95666 0.92208 0.93393 0.85028 0.91453 0.87153 0.87615 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 6.99 71.98 0.50 -2.35 16 2 C -0.07 -1.92 0.62 -52.18 -0.03 -1.96 16 3 C -0.12 -3.98 7.52 71.98 0.54 -3.44 16 4 C -0.10 -2.27 4.23 30.60 0.13 -2.15 16 5 C -0.02 -0.37 5.00 28.79 0.14 -0.23 16 6 C 0.24 5.39 15.43 89.44 1.38 6.77 16 7 N -0.51 -14.89 18.54 20.01 0.37 -14.52 16 8 C 0.14 5.06 3.64 86.38 0.31 5.38 16 9 N -0.58 -23.58 1.90 -678.04 -1.29 -24.87 16 10 C -0.22 -11.22 6.77 84.03 0.57 -10.65 16 11 H 0.05 2.74 6.87 -2.91 -0.02 2.72 16 12 C -0.01 -0.48 5.30 84.86 0.45 -0.03 16 13 N -0.94 -56.43 13.97 21.65 0.30 -56.13 16 14 Si 0.92 44.98 25.09 68.60 1.72 46.70 16 15 H -0.28 -13.02 6.68 99.48 0.66 -12.35 16 16 H -0.32 -16.55 7.11 99.48 0.71 -15.85 16 17 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 18 C 0.11 3.86 5.26 44.99 0.24 4.09 16 19 C -0.19 -6.31 9.80 30.59 0.30 -6.01 16 20 C -0.23 -7.68 10.36 30.59 0.32 -7.36 16 21 H 0.05 1.32 5.99 -2.38 -0.01 1.30 16 22 H 0.08 1.16 6.43 -2.38 -0.02 1.15 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.07 1.70 6.43 -2.38 -0.02 1.69 16 26 H 0.05 1.90 6.29 -2.39 -0.02 1.89 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.14 1.44 6.43 -2.39 -0.02 1.42 16 30 H 0.12 1.81 6.43 -2.39 -0.02 1.79 16 31 H 0.03 1.07 3.43 -2.39 -0.01 1.06 16 32 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 34 H 0.13 3.54 6.57 -2.39 -0.02 3.53 16 35 H 0.07 2.78 6.45 -2.39 -0.02 2.76 16 36 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 38 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -65.78 296.00 6.96 -58.82 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.00 Total: 7.92 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.85 Total: -17.92 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -0.61 Total: -95.52 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.72 Total: 46.70 kcal Total: -65.78 6.96 -58.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352735445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.920 kcal (2) G-P(sol) polarization free energy of solvation -65.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds