Wall clock time and date at job start Sun Mar 29 2020 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46779 * 2 1 4 4 C 1.53003 * 109.46958 * 119.99600 * 2 1 3 5 5 H 1.08993 * 112.96028 * 307.85652 * 4 2 1 6 6 C 1.53934 * 113.75907 * 79.50992 * 4 2 1 7 7 C 1.53935 * 86.45688 * 138.09341 * 6 4 2 8 8 N 1.47967 * 113.85556 * 176.12034 * 4 2 1 9 9 C 1.46894 * 111.00177 * 108.09079 * 8 4 2 10 10 C 1.53005 * 109.47126 * 189.99731 * 9 8 4 11 11 H 1.09001 * 109.46982 * 54.99736 * 10 9 8 12 12 C 1.47200 * 109.46895 * 294.99640 * 10 9 8 13 13 N 6.17028 * 144.66467 * 130.44640 * 2 1 3 14 14 C 1.53001 * 109.47087 * 174.99740 * 10 9 8 15 15 C 1.50703 * 109.46988 * 185.00139 * 14 10 9 16 16 H 1.07996 * 119.99836 * 359.97438 * 15 14 10 17 17 C 1.37874 * 120.00113 * 179.97438 * 15 14 10 18 18 N 1.31511 * 120.00459 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99700 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 90.00064 * 19 17 15 21 21 H 1.48499 * 109.46931 * 209.99851 * 19 17 15 22 22 H 1.48497 * 109.47210 * 330.00022 * 19 17 15 23 23 H 1.08998 * 109.47021 * 299.99838 * 1 2 3 24 24 H 1.08999 * 109.47051 * 60.00370 * 1 2 3 25 25 H 1.09006 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47320 * 239.99741 * 2 1 3 27 27 H 1.08999 * 109.47026 * 299.99644 * 3 2 1 28 28 H 1.09002 * 109.47406 * 59.99794 * 3 2 1 29 29 H 1.09004 * 109.46919 * 179.97438 * 3 2 1 30 30 H 1.09002 * 113.73279 * 252.50531 * 6 4 2 31 31 H 1.09002 * 113.73078 * 23.68230 * 6 4 2 32 32 H 1.09000 * 113.76137 * 90.65073 * 7 6 4 33 33 H 1.09002 * 113.75885 * 222.01772 * 7 6 4 34 34 H 1.09001 * 109.46796 * 309.99371 * 9 8 4 35 35 H 1.08997 * 109.47858 * 69.99415 * 9 8 4 36 36 H 1.09003 * 109.46726 * 304.99949 * 14 10 9 37 37 H 1.08996 * 109.47319 * 64.99899 * 14 10 9 38 38 H 0.96992 * 120.00361 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6010 -0.3380 2.1704 6 6 2.0048 -2.2560 1.1372 7 6 3.3862 -2.2418 1.8162 8 7 3.5124 -0.8576 1.3024 9 6 4.0872 0.0329 2.3195 10 6 5.6106 0.0522 2.1782 11 1 5.8773 0.3282 1.1580 12 6 6.1485 -1.2840 2.4816 13 7 6.5636 -2.3151 2.7158 14 6 6.2003 1.0730 3.1535 15 6 7.6867 1.1813 2.9294 16 1 8.1630 0.5817 2.1678 17 6 8.4383 2.0458 3.6965 18 7 9.7353 2.1407 3.5007 19 14 7.6142 3.0834 5.0133 20 1 7.6107 2.3402 6.2990 21 1 8.3605 4.3564 5.1795 22 1 6.2163 3.3783 4.6083 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.2248 -2.7221 1.7392 31 1 2.0244 -2.6214 0.1104 32 1 3.3418 -2.3044 2.9035 33 1 4.0984 -2.9408 1.3776 34 1 3.6967 1.0412 2.1821 35 1 3.8190 -0.3284 3.3123 36 1 5.7360 2.0450 2.9869 37 1 6.0098 0.7499 4.1769 38 1 10.2642 2.7486 4.0406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353052654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:16 Heat of formation + Delta-G solvation = 36.638338 kcal Electronic energy + Delta-G solvation = -16838.599662 eV Core-core repulsion = 14295.423213 eV Total energy + Delta-G solvation = -2543.176449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22985 -36.55250 -34.60697 -33.84390 -32.21370 -29.49975 -27.15470 -26.07901 -25.63543 -22.65121 -21.46294 -20.80976 -19.51311 -16.91797 -16.81910 -15.94655 -15.29770 -14.92650 -14.38477 -14.18686 -13.44830 -13.25798 -13.06204 -12.69715 -12.57431 -12.39116 -12.21877 -12.09178 -11.92176 -11.53280 -11.39963 -11.29412 -10.98272 -10.85697 -10.75284 -10.68703 -10.26434 -10.23861 -9.93811 -9.65540 -9.31435 -8.69503 -8.60740 -6.09622 -4.10055 3.26796 3.34306 3.34846 3.61991 3.67332 3.88228 4.38776 4.47781 4.63567 4.76670 4.95601 5.07674 5.13815 5.21753 5.25281 5.33988 5.44624 5.53603 5.58624 5.67888 5.69620 5.80994 5.83510 5.88993 5.93377 6.00883 6.16569 6.20292 6.30477 6.38281 6.38644 6.51969 6.96590 7.09712 7.18564 7.65003 8.40716 8.47133 8.94373 9.50281 11.03612 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.029009 B = 0.006187 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.969752 B = 4524.262433 C = 5113.966526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.148 4.148 4 C 0.036 3.964 5 H 0.076 0.924 6 C -0.141 4.141 7 C 0.001 3.999 8 N -0.473 5.473 9 C 0.026 3.974 10 C 0.024 3.976 11 H 0.113 0.887 12 C 0.246 3.754 13 N -0.473 5.473 14 C -0.005 4.005 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.018 0.982 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 -2.488 -5.057 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.205 4.205 4 C -0.073 4.073 5 H 0.094 0.906 6 C -0.179 4.179 7 C -0.128 4.128 8 N -0.195 5.195 9 C -0.104 4.104 10 C 0.002 3.998 11 H 0.131 0.869 12 C -0.071 4.071 13 N -0.150 5.150 14 C -0.044 4.044 15 C -0.564 4.564 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.187 1.187 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.642 -3.804 -5.215 19.728 hybrid contribution -0.632 0.957 1.557 1.934 sum -19.275 -2.847 -3.658 19.824 Atomic orbital electron populations 1.21801 0.95392 1.01489 1.01631 1.20937 0.94659 0.96542 0.97232 1.21811 1.02416 0.95222 1.01079 1.23502 0.90052 0.95376 0.98374 0.90577 1.23403 0.96954 0.95755 1.01807 1.23946 0.97313 0.92889 0.98643 1.68510 1.10101 1.02084 1.38798 1.22833 0.94687 0.98852 0.94030 1.18946 0.91819 0.85390 1.03669 0.86909 1.29028 0.92082 0.94023 0.91973 1.81011 1.09868 1.13788 1.10299 1.19646 0.97654 0.93422 0.93658 1.21035 0.90111 1.24563 1.20736 0.90788 1.24987 0.94663 0.96538 0.96897 1.69902 1.05528 1.37672 1.40452 0.86825 0.80148 0.80122 0.82494 1.20318 1.21223 1.18736 0.92891 0.92630 0.92848 0.90571 0.93056 0.93182 0.91334 0.91475 0.89285 0.91465 0.89565 0.89109 0.93532 0.94455 0.96409 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.16 37.16 0.34 -0.80 16 2 C -0.07 -0.71 2.84 -90.62 -0.26 -0.97 16 3 C -0.15 -1.48 8.61 37.16 0.32 -1.16 16 4 C 0.04 0.38 2.56 -66.64 -0.17 0.21 16 5 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 6 C -0.14 -1.43 7.80 -25.80 -0.20 -1.63 16 7 C 0.00 0.01 6.51 -2.63 -0.02 -0.01 16 8 N -0.47 -6.25 5.57 -230.45 -1.28 -7.54 16 9 C 0.03 0.37 4.30 -3.83 -0.02 0.35 16 10 C 0.02 0.44 2.42 -93.40 -0.23 0.21 16 11 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 12 C 0.25 5.10 12.33 -20.76 -0.26 4.84 16 13 N -0.47 -10.56 18.54 42.15 0.78 -9.78 16 14 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 15 C -0.53 -14.40 9.15 -34.44 -0.32 -14.72 16 16 H 0.07 2.23 7.84 -52.49 -0.41 1.82 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 18 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 19 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.87 8.01 -51.93 -0.42 0.45 16 32 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 33 H 0.09 1.24 8.13 -51.93 -0.42 0.81 16 34 H 0.09 1.19 7.24 -51.93 -0.38 0.81 16 35 H 0.05 0.66 7.39 -51.93 -0.38 0.28 16 36 H 0.04 0.77 7.20 -51.93 -0.37 0.40 16 37 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 310.58 15.07 4.68 4.68 Total: -1.00 -30.52 310.58 -7.22 -37.74 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.51 Total: -2.75 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.99 Total: -11.95 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.27 Total: -43.89 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.52 -7.22 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353052654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.377 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds