Wall clock time and date at job start Sun Mar 29 2020 21:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.78711 * 2 1 4 4 C 1.50769 * 109.75355 * 239.27794 * 2 1 3 5 5 N 1.29638 * 129.26789 * 44.58159 * 4 2 1 6 6 N 1.28987 * 109.47011 * 180.26972 * 5 4 2 7 7 C 1.30924 * 109.75503 * 359.95422 * 6 5 4 8 8 N 1.34411 * 107.03511 * 359.92219 * 7 6 5 9 9 C 1.46306 * 129.76096 * 180.23933 * 8 7 6 10 10 C 1.53468 * 108.17788 * 163.67036 * 9 8 7 11 11 N 1.46965 * 109.73562 * 49.60742 * 10 9 8 12 12 C 1.46904 * 111.00287 * 53.38014 * 11 10 9 13 13 C 1.53002 * 109.46759 * 64.58154 * 12 11 10 14 14 C 1.50703 * 109.46634 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00022 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99627 * 179.72923 * 14 13 12 17 17 N 1.31514 * 120.00145 * 0.27526 * 16 14 13 18 18 Si 1.86803 * 120.00040 * 180.27485 * 16 14 13 19 19 H 1.48507 * 109.46826 * 90.00101 * 18 16 14 20 20 H 1.48498 * 109.47228 * 209.99567 * 18 16 14 21 21 H 1.48498 * 109.47124 * 329.99961 * 18 16 14 22 22 H 1.09001 * 109.46863 * 292.27787 * 1 2 3 23 23 H 1.09001 * 109.47242 * 52.27657 * 1 2 3 24 24 H 1.09000 * 109.47135 * 172.27966 * 1 2 3 25 25 H 1.08003 * 126.47721 * 179.89797 * 7 6 5 26 26 H 1.09003 * 109.71803 * 44.00407 * 9 8 7 27 27 H 1.09000 * 109.72345 * 283.34589 * 9 8 7 28 28 H 1.08998 * 109.42711 * 289.52139 * 10 9 8 29 29 H 1.09005 * 109.42706 * 169.68720 * 10 9 8 30 30 H 1.08999 * 109.46973 * 304.58557 * 12 11 10 31 31 H 1.08996 * 109.47090 * 184.58729 * 12 11 10 32 32 H 1.08999 * 109.47049 * 60.00449 * 13 12 11 33 33 H 1.08990 * 109.47133 * 300.00279 * 13 12 11 34 34 H 0.96997 * 120.00223 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0396 -0.7249 -1.2198 5 7 1.6441 -0.6373 -2.4513 6 7 2.3434 -1.4349 -3.1852 7 6 3.2187 -2.0655 -2.4435 8 7 3.0515 -1.6319 -1.1823 9 6 3.7676 -2.0043 0.0379 10 6 3.4765 -0.9423 1.1069 11 7 2.0282 -0.7084 1.1927 12 6 1.3024 -1.9692 1.3974 13 6 1.6876 -2.5649 2.7530 14 6 0.9436 -3.8586 2.9628 15 1 0.2644 -4.2199 2.2048 16 6 1.1347 -4.5839 4.1196 17 7 1.9621 -4.1442 5.0424 18 14 0.2183 -6.1914 4.3763 19 1 1.0259 -7.3136 3.8343 20 1 -0.0122 -6.4034 5.8279 21 1 -1.0872 -6.1350 3.6709 22 1 -0.3633 0.3896 0.9510 23 1 -0.3634 0.6288 -0.8129 24 1 -0.3633 -1.0183 -0.1381 25 1 3.9387 -2.7963 -2.7813 26 1 4.8386 -2.0420 -0.1611 27 1 3.4227 -2.9787 0.3839 28 1 3.9789 -0.0125 0.8403 29 1 3.8456 -1.2889 2.0722 30 1 1.5626 -2.6710 0.6050 31 1 0.2295 -1.7784 1.3759 32 1 1.4274 -1.8631 3.5454 33 1 2.7605 -2.7556 2.7744 34 1 2.0969 -4.6546 5.8561 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361985783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:07 Heat of formation + Delta-G solvation = 88.695744 kcal Electronic energy + Delta-G solvation = -17221.161598 eV Core-core repulsion = 14576.702185 eV Total energy + Delta-G solvation = -2644.459414 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.21281 -38.72779 -34.68988 -33.48856 -31.90853 -30.20821 -29.47815 -27.65042 -25.35697 -23.40145 -22.86735 -21.99055 -21.06425 -18.50396 -17.18235 -16.64884 -16.49548 -15.62211 -15.02987 -14.74075 -14.53244 -14.22530 -13.63900 -13.22896 -12.69908 -12.26389 -11.96919 -11.87028 -11.56488 -11.54116 -11.13228 -11.05260 -10.84741 -10.65083 -10.30539 -10.02273 -9.98972 -9.56692 -9.28331 -9.04882 -8.46677 -8.23164 -6.12431 -4.15525 1.96016 2.58296 3.00257 3.23921 3.31360 3.34730 4.00508 4.29662 4.38484 4.50991 4.69061 4.85864 5.02553 5.17785 5.24126 5.29861 5.51189 5.61088 5.81096 5.87574 5.90023 6.07254 6.16372 6.23293 6.24813 6.36292 6.74745 6.93508 7.13763 7.18460 7.54848 7.69569 7.90057 8.27852 8.84532 8.91094 9.49520 10.98596 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032638 B = 0.006659 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.702446 B = 4203.730898 C = 4294.419625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.165 3.835 3 H 0.107 0.893 4 C 0.152 3.848 5 N -0.291 5.291 6 N -0.310 5.310 7 C 0.150 3.850 8 N -0.468 5.468 9 C 0.062 3.938 10 C 0.043 3.957 11 N -0.523 5.523 12 C 0.048 3.952 13 C 0.030 3.970 14 C -0.525 4.525 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.215 0.785 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.022 0.978 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.015 0.985 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 5.880 -7.982 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.054 3.946 3 H 0.124 0.876 4 C -0.118 4.118 5 N -0.130 5.130 6 N -0.150 5.150 7 C -0.137 4.137 8 N -0.158 5.158 9 C -0.062 4.062 10 C -0.086 4.086 11 N -0.245 5.245 12 C -0.078 4.078 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.232 0.768 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.617 6.550 -8.598 11.397 hybrid contribution 0.690 -2.164 0.543 2.336 sum 4.307 4.385 -8.055 10.132 Atomic orbital electron populations 1.21844 0.91687 1.03134 1.03018 1.20609 0.96901 0.96662 0.80440 0.87574 1.25964 0.91531 0.95944 0.98374 1.73926 1.21541 1.17944 0.99614 1.74494 1.06128 1.07989 1.26421 1.26174 1.03241 1.03333 0.80992 1.46240 1.28070 1.32061 1.09426 1.22888 0.97447 1.03086 0.82790 1.22624 0.90111 0.97017 0.98855 1.62680 1.02932 1.25164 1.33688 1.22648 0.98355 0.86435 1.00365 1.19095 0.96578 0.95100 0.89954 1.21140 1.25791 1.06174 1.03322 0.92855 1.24962 0.95263 0.97913 0.95906 1.69949 1.36013 1.38773 1.08317 0.86610 0.80317 0.83771 0.77435 1.20702 1.21058 1.19819 0.90354 0.91188 0.91913 0.76829 0.88475 0.87643 0.90338 0.86681 0.95979 0.90536 0.95370 0.96656 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.14 37.16 0.30 -1.64 16 2 C 0.17 2.41 3.24 -68.56 -0.22 2.19 16 3 H 0.11 1.37 8.14 -51.92 -0.42 0.95 16 4 C 0.15 2.46 6.59 -155.27 -1.02 1.44 16 5 N -0.29 -5.25 12.15 32.76 0.40 -4.85 16 6 N -0.31 -5.42 12.24 29.55 0.36 -5.06 16 7 C 0.15 2.13 12.86 -90.59 -1.17 0.96 16 8 N -0.47 -6.84 2.88 -115.45 -0.33 -7.17 16 9 C 0.06 0.79 6.30 -3.90 -0.02 0.77 16 10 C 0.04 0.58 5.51 -3.55 -0.02 0.56 16 11 N -0.52 -8.35 4.87 -227.23 -1.11 -9.45 16 12 C 0.05 0.93 3.78 -3.82 -0.01 0.91 16 13 C 0.03 0.71 4.86 -27.88 -0.14 0.58 16 14 C -0.53 -14.06 9.11 -34.44 -0.31 -14.38 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 18 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.98 6.64 -51.93 -0.34 0.63 16 25 H 0.22 2.03 8.06 -52.48 -0.42 1.61 16 26 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.11 1.54 6.90 -51.93 -0.36 1.19 16 28 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.12 1.65 6.77 -51.93 -0.35 1.30 16 30 H 0.02 0.44 5.74 -51.93 -0.30 0.14 16 31 H 0.08 1.51 5.82 -51.93 -0.30 1.20 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.37 6.66 -51.93 -0.35 0.02 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 273.54 15.07 4.12 4.12 Total: -1.00 -31.31 273.54 -8.05 -39.36 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.50 Total: -1.14 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.71 Total: -7.02 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.06 Total: -51.23 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.31 -8.05 -39.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361985783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.058 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds