Wall clock time and date at job start Sun Mar 29 2020 21:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.78711 * 2 1 4 4 C 1.50769 * 109.75355 * 239.27794 * 2 1 3 5 5 N 1.29638 * 129.26789 * 44.58159 * 4 2 1 6 6 N 1.28987 * 109.47011 * 180.26972 * 5 4 2 7 7 C 1.30924 * 109.75503 * 359.95422 * 6 5 4 8 8 N 1.34411 * 107.03511 * 359.92219 * 7 6 5 9 9 C 1.46306 * 129.76096 * 180.23933 * 8 7 6 10 10 C 1.53468 * 108.17788 * 163.67036 * 9 8 7 11 11 N 1.46965 * 109.73562 * 49.60742 * 10 9 8 12 12 C 1.46904 * 111.00287 * 53.38014 * 11 10 9 13 13 C 1.53002 * 109.46759 * 64.58154 * 12 11 10 14 14 C 1.50703 * 109.46634 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00022 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99627 * 179.72923 * 14 13 12 17 17 N 1.31514 * 120.00145 * 0.27526 * 16 14 13 18 18 Si 1.86803 * 120.00040 * 180.27485 * 16 14 13 19 19 H 1.48507 * 109.46826 * 90.00101 * 18 16 14 20 20 H 1.48498 * 109.47228 * 209.99567 * 18 16 14 21 21 H 1.48498 * 109.47124 * 329.99961 * 18 16 14 22 22 H 1.09001 * 109.46863 * 292.27787 * 1 2 3 23 23 H 1.09001 * 109.47242 * 52.27657 * 1 2 3 24 24 H 1.09000 * 109.47135 * 172.27966 * 1 2 3 25 25 H 1.08003 * 126.47721 * 179.89797 * 7 6 5 26 26 H 1.09003 * 109.71803 * 44.00407 * 9 8 7 27 27 H 1.09000 * 109.72345 * 283.34589 * 9 8 7 28 28 H 1.08998 * 109.42711 * 289.52139 * 10 9 8 29 29 H 1.09005 * 109.42706 * 169.68720 * 10 9 8 30 30 H 1.08999 * 109.46973 * 304.58557 * 12 11 10 31 31 H 1.08996 * 109.47090 * 184.58729 * 12 11 10 32 32 H 1.08999 * 109.47049 * 60.00449 * 13 12 11 33 33 H 1.08990 * 109.47133 * 300.00279 * 13 12 11 34 34 H 0.96997 * 120.00223 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0396 -0.7249 -1.2198 5 7 1.6441 -0.6373 -2.4513 6 7 2.3434 -1.4349 -3.1852 7 6 3.2187 -2.0655 -2.4435 8 7 3.0515 -1.6319 -1.1823 9 6 3.7676 -2.0043 0.0379 10 6 3.4765 -0.9423 1.1069 11 7 2.0282 -0.7084 1.1927 12 6 1.3024 -1.9692 1.3974 13 6 1.6876 -2.5649 2.7530 14 6 0.9436 -3.8586 2.9628 15 1 0.2644 -4.2199 2.2048 16 6 1.1347 -4.5839 4.1196 17 7 1.9621 -4.1442 5.0424 18 14 0.2183 -6.1914 4.3763 19 1 1.0259 -7.3136 3.8343 20 1 -0.0122 -6.4034 5.8279 21 1 -1.0872 -6.1350 3.6709 22 1 -0.3633 0.3896 0.9510 23 1 -0.3634 0.6288 -0.8129 24 1 -0.3633 -1.0183 -0.1381 25 1 3.9387 -2.7963 -2.7813 26 1 4.8386 -2.0420 -0.1611 27 1 3.4227 -2.9787 0.3839 28 1 3.9789 -0.0125 0.8403 29 1 3.8456 -1.2889 2.0722 30 1 1.5626 -2.6710 0.6050 31 1 0.2295 -1.7784 1.3759 32 1 1.4274 -1.8631 3.5454 33 1 2.7605 -2.7556 2.7744 34 1 2.0969 -4.6546 5.8561 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361985783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:07 Heat of formation + Delta-G solvation = 68.835400 kcal Electronic energy + Delta-G solvation = -17222.022808 eV Core-core repulsion = 14576.702185 eV Total energy + Delta-G solvation = -2645.320623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.39018 -39.99889 -35.89233 -35.36524 -33.36704 -31.61613 -30.88861 -28.85906 -27.06465 -24.73565 -24.20225 -23.14251 -22.60918 -19.82444 -18.56783 -18.29075 -17.73416 -16.97450 -16.47449 -16.18865 -16.00636 -15.46135 -14.90731 -14.39942 -14.19651 -14.13532 -13.43825 -13.06171 -12.96367 -12.88488 -12.71085 -12.49522 -12.47857 -12.15148 -11.76485 -11.53719 -11.33956 -11.27051 -11.11952 -10.54149 -10.26742 -9.55353 -8.21604 -6.31278 0.82704 1.38444 1.40339 1.48880 1.50525 1.79631 2.38017 2.80586 3.12750 3.14535 3.43616 3.68950 3.81949 3.94677 4.13769 4.17744 4.33264 4.43171 4.46233 4.71065 4.75275 4.78148 4.86182 4.99506 5.01945 5.10244 5.24234 5.45384 5.60383 5.74693 5.85346 5.98501 6.00516 6.27005 6.84634 7.37776 7.64959 8.89568 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032638 B = 0.006659 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.702446 B = 4203.730898 C = 4294.419625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.168 3.832 3 H 0.130 0.870 4 C 0.145 3.855 5 N -0.320 5.320 6 N -0.350 5.350 7 C 0.166 3.834 8 N -0.471 5.471 9 C 0.067 3.933 10 C 0.040 3.960 11 N -0.528 5.528 12 C 0.071 3.929 13 C 0.041 3.959 14 C -0.545 4.545 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.270 1.270 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.258 0.742 26 H 0.138 0.862 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.015 0.985 31 H 0.069 0.931 32 H -0.001 1.001 33 H 0.008 0.992 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 5.649 -8.534 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.057 3.943 3 H 0.148 0.852 4 C -0.127 4.127 5 N -0.159 5.159 6 N -0.189 5.189 7 C -0.123 4.123 8 N -0.161 5.161 9 C -0.056 4.056 10 C -0.089 4.089 11 N -0.250 5.250 12 C -0.056 4.056 13 C 0.004 3.996 14 C -0.583 4.583 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.274 0.726 26 H 0.156 0.844 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.033 0.967 31 H 0.087 0.913 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.363 6.328 -9.164 11.960 hybrid contribution 0.498 -2.075 0.711 2.249 sum 4.862 4.253 -8.452 10.638 Atomic orbital electron populations 1.21804 0.91547 1.02040 1.03838 1.20737 0.97086 0.97275 0.79220 0.85226 1.26154 0.91877 0.96431 0.98223 1.73846 1.22534 1.19029 1.00503 1.74420 1.07649 1.09307 1.27535 1.26991 1.02469 1.02467 0.80341 1.46397 1.27850 1.31761 1.10067 1.22925 0.99487 1.01391 0.81828 1.22703 0.88576 0.98705 0.98870 1.62574 1.04233 1.23306 1.34890 1.22174 0.98255 0.87708 0.97468 1.18888 0.95696 0.93602 0.91461 1.21541 1.25925 1.07470 1.03380 0.93176 1.25754 0.96051 1.01206 0.95697 1.70052 1.37305 1.40191 1.08808 0.85621 0.79187 0.79871 0.77428 1.19840 1.20627 1.19413 0.89710 0.89985 0.94068 0.72604 0.84398 0.89718 0.87620 0.87678 0.96721 0.91295 0.98252 0.97364 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.14 71.98 0.59 -3.07 16 2 C 0.17 4.65 3.24 44.10 0.14 4.79 16 3 H 0.13 3.02 8.14 -2.38 -0.02 3.00 16 4 C 0.14 4.46 6.59 138.11 0.91 5.37 16 5 N -0.32 -11.28 12.15 -50.27 -0.61 -11.89 16 6 N -0.35 -11.77 12.24 -60.44 -0.74 -12.51 16 7 C 0.17 4.27 12.86 180.34 2.32 6.59 16 8 N -0.47 -12.73 2.88 -519.18 -1.49 -14.23 16 9 C 0.07 1.56 6.30 86.57 0.55 2.10 16 10 C 0.04 1.01 5.51 86.45 0.48 1.48 16 11 N -0.53 -16.32 4.87 -872.83 -4.25 -20.58 16 12 C 0.07 2.74 3.78 86.30 0.33 3.06 16 13 C 0.04 1.97 4.86 29.85 0.15 2.11 16 14 C -0.54 -29.41 9.11 25.60 0.23 -29.17 16 15 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 16 C 0.01 0.65 5.46 84.65 0.46 1.11 16 17 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 18 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.28 6.64 -2.39 -0.02 1.27 16 25 H 0.26 3.89 8.06 -2.91 -0.02 3.87 16 26 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.08 2.37 6.90 -2.39 -0.02 2.35 16 28 H 0.11 2.14 8.08 -2.39 -0.02 2.12 16 29 H 0.11 2.91 6.77 -2.38 -0.02 2.89 16 30 H 0.01 0.58 5.74 -2.39 -0.01 0.57 16 31 H 0.07 2.74 5.82 -2.39 -0.01 2.73 16 32 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.01 0.40 6.66 -2.39 -0.02 0.38 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.58 273.54 2.46 -65.12 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.10 Total: 7.68 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.15 Total: -5.61 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -6.81 Total: -111.95 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.58 2.46 -65.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361985783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.959 kcal (2) G-P(sol) polarization free energy of solvation -67.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds