Wall clock time and date at job start Sun Mar 29 2020 21:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28600 * 124.61519 * 2 1 4 4 C 1.31382 * 108.71774 * 179.97438 * 3 2 1 5 5 C 1.39680 * 105.89948 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.04979 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47047 * 94.99638 * 6 5 4 8 8 C 1.46899 * 111.00147 * 174.93298 * 7 6 5 9 9 C 1.52991 * 109.47370 * 185.09040 * 8 7 6 10 10 C 1.50700 * 115.55039 * 65.13916 * 9 8 7 11 11 H 1.08006 * 119.99916 * 264.81774 * 10 9 8 12 12 C 1.37875 * 120.00384 * 84.81249 * 10 9 8 13 13 N 1.31516 * 119.99847 * 184.67254 * 12 10 9 14 14 Si 1.86797 * 119.99864 * 4.66954 * 12 10 9 15 15 H 1.48510 * 109.46839 * 94.52046 * 14 12 10 16 16 H 1.48496 * 109.47400 * 214.51528 * 14 12 10 17 17 H 1.48499 * 109.47228 * 334.52154 * 14 12 10 18 18 C 1.52996 * 117.50202 * 279.46402 * 9 8 7 19 19 C 1.53005 * 117.50018 * 210.80235 * 9 8 7 20 20 N 1.28597 * 124.62110 * 179.97438 * 2 1 3 21 21 H 1.08994 * 109.47607 * 90.02391 * 1 2 3 22 22 H 1.09006 * 109.46577 * 210.02477 * 1 2 3 23 23 H 1.09001 * 109.47059 * 330.02034 * 1 2 3 24 24 H 1.07994 * 127.04861 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.46725 * 214.99646 * 6 5 4 26 26 H 1.08994 * 109.47000 * 334.99753 * 6 5 4 27 27 H 1.00901 * 111.00040 * 298.89006 * 7 6 5 28 28 H 1.08999 * 109.46955 * 305.09552 * 8 7 6 29 29 H 1.08999 * 109.46466 * 65.09241 * 8 7 6 30 30 H 0.97009 * 119.99482 * 180.02562 * 13 12 10 31 31 H 1.08998 * 117.50048 * 0.02562 * 18 9 8 32 32 H 1.09004 * 117.50086 * 145.01682 * 18 9 8 33 33 H 1.09000 * 117.49905 * 214.98000 * 19 9 8 34 34 H 1.09000 * 117.49842 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0584 0.0000 4 6 3.4591 0.6985 0.0006 5 6 3.4592 -0.6983 0.0003 6 6 4.6620 -1.6063 0.0013 7 7 4.9788 -1.9978 1.3812 8 6 6.0719 -2.9786 1.4124 9 6 6.2878 -3.4563 2.8497 10 6 5.1447 -4.2283 3.4566 11 1 4.4118 -3.7191 4.0650 12 6 5.0343 -5.5847 3.2353 13 7 3.9886 -6.2418 3.6874 14 14 6.3701 -6.4890 2.2933 15 1 7.3426 -7.0732 3.2517 16 1 5.7580 -7.5746 1.4858 17 1 7.0717 -5.5383 1.3938 18 6 7.1037 -2.5551 3.7787 19 6 7.7069 -3.8606 3.2543 20 7 2.1956 -1.0583 0.0005 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 4.3210 1.3492 0.0011 25 1 4.4453 -2.4969 -0.5885 26 1 5.5134 -1.0818 -0.4322 27 1 5.2012 -1.1905 1.9441 28 1 5.8147 -3.8294 0.7815 29 1 6.9865 -2.5152 1.0423 30 1 3.9112 -7.1962 3.5319 31 1 7.4864 -1.6217 3.3660 32 1 6.8138 -2.5208 4.8289 33 1 7.8136 -4.6847 3.9597 34 1 8.4866 -3.7867 2.4962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378857112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:49 Heat of formation + Delta-G solvation = 144.660692 kcal Electronic energy + Delta-G solvation = -16375.136669 eV Core-core repulsion = 13733.104077 eV Total energy + Delta-G solvation = -2642.032592 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.33830 -37.42068 -35.13664 -33.19929 -32.16018 -31.90405 -28.59769 -26.33020 -25.26121 -23.32230 -22.05227 -21.55737 -20.65294 -18.83540 -17.10529 -16.66667 -16.36556 -15.30375 -14.73571 -14.46589 -14.12823 -13.86433 -13.51153 -13.00385 -12.91685 -12.62720 -12.36497 -12.18627 -11.57840 -11.04873 -10.86324 -10.59814 -10.55723 -10.40650 -10.10467 -10.00108 -9.44433 -9.05998 -8.97388 -8.47132 -8.31783 -7.65699 -5.94026 -3.92692 1.99176 2.47068 2.59138 3.37216 3.46719 3.50843 4.21576 4.55177 4.68848 4.95841 4.96525 5.08231 5.23133 5.24993 5.32758 5.38188 5.61775 5.87437 5.91827 6.09828 6.20496 6.23937 6.33604 6.34836 6.48766 6.54110 6.77759 6.84569 7.12344 7.24397 7.74071 7.86810 8.06600 8.52579 8.69182 9.12041 9.69498 11.18864 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.006295 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.065544 B = 4446.569026 C = 4905.547450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.164 5.164 3 N -0.299 5.299 4 C -0.026 4.026 5 C 0.017 3.983 6 C 0.146 3.854 7 N -0.660 5.660 8 C 0.103 3.897 9 C 0.010 3.990 10 C -0.461 4.461 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.903 5.903 14 Si 0.877 3.123 15 H -0.283 1.283 16 H -0.296 1.296 17 H -0.258 1.258 18 C -0.185 4.185 19 C -0.202 4.202 20 N -0.263 5.263 21 H 0.085 0.915 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.193 0.807 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.336 0.664 28 H 0.068 0.932 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 12.174 -8.764 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.065 5.065 3 N -0.140 5.140 4 C -0.209 4.209 5 C -0.147 4.147 6 C 0.015 3.985 7 N -0.290 5.290 8 C -0.026 4.026 9 C 0.008 3.992 10 C -0.498 4.498 11 H 0.094 0.906 12 C -0.128 4.128 13 N -0.541 5.541 14 Si 0.706 3.294 15 H -0.210 1.210 16 H -0.223 1.223 17 H -0.182 1.182 18 C -0.222 4.222 19 C -0.240 4.240 20 N -0.106 5.106 21 H 0.104 0.896 22 H 0.122 0.878 23 H 0.117 0.883 24 H 0.210 0.790 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.154 0.846 28 H 0.087 0.913 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.881 11.516 -8.737 14.740 hybrid contribution 2.304 -0.024 -0.620 2.386 sum -0.577 11.492 -9.356 14.830 Atomic orbital electron populations 1.22058 0.70622 1.05825 1.04489 1.47928 1.08783 0.99518 1.50268 1.73951 1.03956 1.16440 1.19679 1.24591 0.94365 0.94874 1.07088 1.23145 0.92777 0.93511 1.05236 1.20073 0.89732 0.96200 0.92538 1.60055 1.44611 1.16398 1.07982 1.21700 0.88896 0.94014 0.97974 1.19419 0.90456 0.98270 0.91016 1.20148 1.07676 0.91794 1.30200 0.90568 1.24942 0.95256 0.97496 0.95112 1.69918 1.28417 1.08675 1.47093 0.86886 0.82410 0.79459 0.80666 1.20954 1.22333 1.18212 1.22808 1.06667 0.92437 1.00276 1.22990 0.98341 0.98835 1.03786 1.74153 1.03803 1.14784 1.17837 0.89642 0.87801 0.88257 0.79004 0.89604 0.93862 0.84643 0.91316 0.97737 0.92923 0.91391 0.89679 0.89578 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.02 11.57 59.85 0.69 1.71 16 2 N -0.16 -2.42 4.35 -16.64 -0.07 -2.50 16 3 N -0.30 -4.44 12.05 30.67 0.37 -4.07 16 4 C -0.03 -0.37 12.16 -17.21 -0.21 -0.58 16 5 C 0.02 0.28 6.91 -82.25 -0.57 -0.29 16 6 C 0.15 2.31 6.27 -4.98 -0.03 2.28 16 7 N -0.66 -12.56 6.34 -115.07 -0.73 -13.29 16 8 C 0.10 2.10 5.12 -3.83 -0.02 2.08 16 9 C 0.01 0.22 0.97 -155.66 -0.15 0.07 16 10 C -0.46 -13.02 9.33 -34.44 -0.32 -13.34 16 11 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 14 Si 0.88 21.92 24.94 -169.99 -4.24 17.68 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 17 H -0.26 -5.99 5.69 56.52 0.32 -5.67 16 18 C -0.18 -3.71 9.96 -26.69 -0.27 -3.98 16 19 C -0.20 -4.27 7.31 -26.69 -0.20 -4.46 16 20 N -0.26 -4.61 12.05 33.72 0.41 -4.20 16 21 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 25 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.34 5.94 8.83 -39.29 -0.35 5.60 16 28 H 0.07 1.51 7.01 -51.93 -0.36 1.14 16 29 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.09 1.92 7.13 -51.93 -0.37 1.55 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 289.23 15.07 4.36 4.36 Total: -1.00 -34.15 289.23 -5.24 -39.39 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.94 Total: 4.52 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.17 Total: -14.48 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.75 Total: -51.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.24 Total: 17.68 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.15 -5.24 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378857112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.049 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds