Wall clock time and date at job start Sun Mar 29 2020 21:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28600 * 124.61519 * 2 1 4 4 C 1.31382 * 108.71774 * 179.97438 * 3 2 1 5 5 C 1.39680 * 105.89948 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.04979 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47047 * 94.99638 * 6 5 4 8 8 C 1.46899 * 111.00147 * 174.93298 * 7 6 5 9 9 C 1.52991 * 109.47370 * 185.09040 * 8 7 6 10 10 C 1.50700 * 115.55039 * 65.13916 * 9 8 7 11 11 H 1.08006 * 119.99916 * 264.81774 * 10 9 8 12 12 C 1.37875 * 120.00384 * 84.81249 * 10 9 8 13 13 N 1.31516 * 119.99847 * 184.67254 * 12 10 9 14 14 Si 1.86797 * 119.99864 * 4.66954 * 12 10 9 15 15 H 1.48510 * 109.46839 * 94.52046 * 14 12 10 16 16 H 1.48496 * 109.47400 * 214.51528 * 14 12 10 17 17 H 1.48499 * 109.47228 * 334.52154 * 14 12 10 18 18 C 1.52996 * 117.50202 * 279.46402 * 9 8 7 19 19 C 1.53005 * 117.50018 * 210.80235 * 9 8 7 20 20 N 1.28597 * 124.62110 * 179.97438 * 2 1 3 21 21 H 1.08994 * 109.47607 * 90.02391 * 1 2 3 22 22 H 1.09006 * 109.46577 * 210.02477 * 1 2 3 23 23 H 1.09001 * 109.47059 * 330.02034 * 1 2 3 24 24 H 1.07994 * 127.04861 * 180.02562 * 4 3 2 25 25 H 1.08998 * 109.46725 * 214.99646 * 6 5 4 26 26 H 1.08994 * 109.47000 * 334.99753 * 6 5 4 27 27 H 1.00901 * 111.00040 * 298.89006 * 7 6 5 28 28 H 1.08999 * 109.46955 * 305.09552 * 8 7 6 29 29 H 1.08999 * 109.46466 * 65.09241 * 8 7 6 30 30 H 0.97009 * 119.99482 * 180.02562 * 13 12 10 31 31 H 1.08998 * 117.50048 * 0.02562 * 18 9 8 32 32 H 1.09004 * 117.50086 * 145.01682 * 18 9 8 33 33 H 1.09000 * 117.49905 * 214.98000 * 19 9 8 34 34 H 1.09000 * 117.49842 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0584 0.0000 4 6 3.4591 0.6985 0.0006 5 6 3.4592 -0.6983 0.0003 6 6 4.6620 -1.6063 0.0013 7 7 4.9788 -1.9978 1.3812 8 6 6.0719 -2.9786 1.4124 9 6 6.2878 -3.4563 2.8497 10 6 5.1447 -4.2283 3.4566 11 1 4.4118 -3.7191 4.0650 12 6 5.0343 -5.5847 3.2353 13 7 3.9886 -6.2418 3.6874 14 14 6.3701 -6.4890 2.2933 15 1 7.3426 -7.0732 3.2517 16 1 5.7580 -7.5746 1.4858 17 1 7.0717 -5.5383 1.3938 18 6 7.1037 -2.5551 3.7787 19 6 7.7069 -3.8606 3.2543 20 7 2.1956 -1.0583 0.0005 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 4.3210 1.3492 0.0011 25 1 4.4453 -2.4969 -0.5885 26 1 5.5134 -1.0818 -0.4322 27 1 5.2012 -1.1905 1.9441 28 1 5.8147 -3.8294 0.7815 29 1 6.9865 -2.5152 1.0423 30 1 3.9112 -7.1962 3.5319 31 1 7.4864 -1.6217 3.3660 32 1 6.8138 -2.5208 4.8289 33 1 7.8136 -4.6847 3.9597 34 1 8.4866 -3.7867 2.4962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378857112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:49 Heat of formation + Delta-G solvation = 117.783250 kcal Electronic energy + Delta-G solvation = -16376.302162 eV Core-core repulsion = 13733.104077 eV Total energy + Delta-G solvation = -2643.198085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.44338 -39.06977 -36.48971 -34.31978 -34.07553 -33.32715 -29.74867 -27.95477 -26.88912 -24.78429 -23.26243 -23.05381 -21.84687 -20.70008 -18.36138 -18.07455 -17.72832 -17.03807 -16.26686 -15.73007 -15.47098 -15.27604 -15.02724 -14.68356 -14.04043 -13.83422 -13.61224 -13.51076 -13.22132 -12.96388 -12.42386 -12.14817 -12.03421 -11.86252 -11.72887 -11.41415 -11.22307 -10.91934 -10.46437 -10.24264 -10.05164 -9.02633 -8.17869 -6.20620 0.86970 1.40006 1.42259 1.45853 1.55806 1.57682 2.45671 3.12992 3.18165 3.26510 3.65176 3.94229 4.19303 4.27452 4.30586 4.36289 4.45948 4.50677 4.55008 4.59536 4.67796 4.77567 4.90337 4.92688 5.16176 5.21167 5.28351 5.49248 5.60358 5.81599 5.82338 6.31760 6.45131 6.71866 6.86353 7.40937 7.45489 8.99395 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.029403 B = 0.006295 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.065544 B = 4446.569026 C = 4905.547450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.166 5.166 3 N -0.309 5.309 4 C -0.020 4.020 5 C -0.001 4.001 6 C 0.151 3.849 7 N -0.687 5.687 8 C 0.113 3.887 9 C -0.022 4.022 10 C -0.456 4.456 11 H 0.019 0.981 12 C 0.008 3.992 13 N -0.961 5.961 14 Si 0.942 3.058 15 H -0.276 1.276 16 H -0.304 1.304 17 H -0.222 1.222 18 C -0.165 4.165 19 C -0.194 4.194 20 N -0.306 5.306 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.120 0.880 24 H 0.230 0.770 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.343 0.657 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.260 0.740 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 13.968 -10.455 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.068 5.068 3 N -0.151 5.151 4 C -0.202 4.202 5 C -0.164 4.164 6 C 0.021 3.979 7 N -0.320 5.320 8 C -0.016 4.016 9 C -0.024 4.024 10 C -0.494 4.494 11 H 0.038 0.962 12 C -0.187 4.187 13 N -0.602 5.602 14 Si 0.767 3.233 15 H -0.202 1.202 16 H -0.232 1.232 17 H -0.144 1.144 18 C -0.202 4.202 19 C -0.232 4.232 20 N -0.150 5.150 21 H 0.126 0.874 22 H 0.122 0.878 23 H 0.139 0.861 24 H 0.246 0.754 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.162 0.838 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.408 13.351 -10.433 16.948 hybrid contribution 1.402 -0.477 -0.006 1.481 sum 0.994 12.873 -10.439 16.604 Atomic orbital electron populations 1.22479 0.68378 1.06910 1.06385 1.48403 1.10103 0.98841 1.49460 1.73941 1.04527 1.16575 1.20036 1.25150 0.95107 0.94335 1.05620 1.23334 0.92475 0.94680 1.05926 1.20078 0.91003 0.96111 0.90731 1.59907 1.44827 1.16964 1.10272 1.21456 0.90845 0.94006 0.95318 1.19353 0.89618 1.00219 0.93164 1.20328 1.08115 0.92087 1.28886 0.96233 1.25870 0.97677 0.98597 0.96556 1.70101 1.31289 1.08939 1.49908 0.85838 0.79447 0.78264 0.79712 1.20233 1.23193 1.14436 1.22839 1.04516 0.93775 0.99074 1.23038 0.97375 0.98773 1.04013 1.74092 1.05080 1.16573 1.19216 0.87359 0.87805 0.86132 0.75414 0.91149 0.89832 0.83848 0.93364 0.93804 0.93145 0.87383 0.91197 0.91262 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 11.57 127.77 1.48 3.19 16 2 N -0.17 -4.77 4.35 -206.55 -0.90 -5.67 16 3 N -0.31 -8.66 12.05 -56.87 -0.69 -9.35 16 4 C -0.02 -0.51 12.16 85.11 1.03 0.52 16 5 C 0.00 -0.04 6.91 42.98 0.30 0.26 16 6 C 0.15 4.48 6.27 85.56 0.54 5.01 16 7 N -0.69 -25.02 6.34 -517.97 -3.28 -28.31 16 8 C 0.11 4.27 5.12 86.30 0.44 4.71 16 9 C -0.02 -0.99 0.97 -52.93 -0.05 -1.04 16 10 C -0.46 -26.51 9.33 25.60 0.24 -26.27 16 11 H 0.02 1.31 8.06 -2.91 -0.02 1.28 16 12 C 0.01 0.48 5.47 84.65 0.46 0.94 16 13 N -0.96 -62.81 13.96 21.45 0.30 -62.51 16 14 Si 0.94 45.22 24.94 68.60 1.71 46.94 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 16 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 17 H -0.22 -9.29 5.69 99.48 0.57 -8.73 16 18 C -0.16 -6.13 9.96 30.62 0.30 -5.82 16 19 C -0.19 -7.50 7.31 30.62 0.22 -7.28 16 20 N -0.31 -10.67 12.05 -47.24 -0.57 -11.24 16 21 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.23 3.74 8.06 -2.91 -0.02 3.72 16 25 H 0.07 2.27 8.09 -2.39 -0.02 2.25 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.34 11.37 8.83 -89.69 -0.79 10.58 16 28 H 0.05 2.00 7.01 -2.39 -0.02 1.98 16 29 H 0.04 1.33 8.09 -2.39 -0.02 1.31 16 30 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 31 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 33 H 0.07 2.91 7.13 -2.39 -0.02 2.89 16 34 H 0.10 3.36 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -77.69 289.23 1.70 -75.99 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.16 Total: 19.93 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.97 Total: -25.78 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -5.14 Total: -117.08 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.71 Total: 46.94 kcal Total: -77.69 1.70 -75.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378857112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.771 kcal (2) G-P(sol) polarization free energy of solvation -77.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds