Wall clock time and date at job start Sun Mar 29 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.36936 * 120.00715 * 265.77081 * 3 2 1 5 5 H 1.07993 * 119.99916 * 146.20166 * 4 3 2 6 6 C 1.38812 * 119.99416 * 326.20350 * 4 3 2 7 7 N 1.31622 * 120.00254 * 337.69510 * 6 4 3 8 8 Si 1.86800 * 119.99910 * 157.69663 * 6 4 3 9 9 H 1.48495 * 109.47236 * 89.99664 * 8 6 4 10 10 H 1.48503 * 109.47315 * 210.00224 * 8 6 4 11 11 H 1.48506 * 109.47113 * 329.99861 * 8 6 4 12 12 C 1.46507 * 119.99484 * 85.76748 * 3 2 1 13 13 C 1.53001 * 109.47088 * 90.00157 * 12 3 2 14 14 H 1.09007 * 115.55014 * 330.67555 * 13 12 3 15 15 C 1.53002 * 117.50160 * 184.99789 * 13 12 3 16 16 C 1.53004 * 117.49956 * 116.37273 * 13 12 3 17 17 Cl 1.80298 * 117.50287 * 214.98165 * 16 13 12 18 18 Cl 1.80296 * 117.49839 * 0.02562 * 16 13 12 19 19 H 1.09003 * 109.47172 * 299.99611 * 1 2 3 20 20 H 1.09000 * 109.47219 * 59.99319 * 1 2 3 21 21 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47686 * 120.00524 * 2 1 3 23 23 H 1.09003 * 109.47172 * 240.00389 * 2 1 3 24 24 H 0.96997 * 119.99891 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46908 * 210.00081 * 12 3 2 26 26 H 1.08995 * 109.47276 * 330.00442 * 12 3 2 27 27 H 1.09003 * 117.49335 * 359.97438 * 15 13 12 28 28 H 1.08999 * 117.49620 * 145.02092 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3290 1.9977 -1.1826 5 1 2.1597 3.0579 -1.2996 6 6 2.8616 1.2599 -2.2308 7 7 3.4705 0.1182 -1.9894 8 14 2.7142 1.8873 -3.9841 9 1 3.8917 2.7321 -4.3082 10 1 2.6592 0.7350 -4.9193 11 1 1.4744 2.6936 -4.1188 12 6 2.1742 2.1030 1.2654 13 6 3.5847 1.8747 1.8123 14 1 4.0451 0.9239 1.5434 15 6 3.9097 2.4519 3.1915 16 6 4.5009 3.0940 1.9348 17 17 6.2597 2.8485 1.6231 18 17 3.8354 4.6899 1.4241 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.8429 -0.3972 -2.7219 25 1 2.0176 3.1685 1.0975 26 1 1.4419 1.7370 1.9850 27 1 3.1187 2.9947 3.7090 28 1 4.5841 1.8811 3.8298 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379312626.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:18 Heat of formation + Delta-G solvation = 28.558192 kcal Electronic energy + Delta-G solvation = -13303.180558 eV Core-core repulsion = 10828.545192 eV Total energy + Delta-G solvation = -2474.635366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.77380 -35.76836 -35.49057 -34.55174 -31.35912 -29.48794 -26.10030 -23.42125 -21.85476 -21.03304 -19.49555 -16.85871 -15.80878 -14.77691 -14.54528 -13.90063 -13.69053 -12.86283 -12.39973 -12.23513 -11.92202 -11.71182 -11.35911 -11.21630 -10.80200 -10.73381 -10.66760 -10.58917 -10.28011 -10.10380 -9.84909 -9.71837 -9.54461 -9.14572 -8.44051 -6.61898 -5.76309 -3.28346 1.69630 2.73512 3.39950 3.47268 3.50291 3.79040 4.50962 4.75459 4.87957 5.36626 5.56516 5.70424 5.70800 6.17341 6.29232 6.30476 6.41624 6.57766 6.67962 6.84972 6.93806 7.27350 7.77155 7.87049 8.53197 9.21942 9.84287 10.39431 11.25412 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.010081 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.391210 B = 2776.771431 C = 3242.596240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 N -0.577 5.577 4 C -0.250 4.250 5 H 0.063 0.937 6 C 0.010 3.990 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.161 3.839 13 C -0.107 4.107 14 H 0.125 0.875 15 C -0.163 4.163 16 C 0.013 3.987 17 Cl -0.114 7.114 18 Cl -0.103 7.103 19 H 0.031 0.969 20 H 0.049 0.951 21 H 0.034 0.966 22 H 0.019 0.981 23 H 0.101 0.899 24 H 0.253 0.747 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 3.104 9.019 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.296 5.296 4 C -0.380 4.380 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.213 1.213 10 H -0.216 1.216 11 H -0.204 1.204 12 C 0.034 3.966 13 C -0.129 4.129 14 H 0.143 0.857 15 C -0.202 4.202 16 C -0.038 4.038 17 Cl -0.087 7.087 18 Cl -0.076 7.076 19 H 0.051 0.949 20 H 0.068 0.932 21 H 0.053 0.947 22 H 0.038 0.962 23 H 0.118 0.882 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.129 0.871 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.073 3.093 8.804 9.332 hybrid contribution 0.343 0.417 -0.982 1.121 sum 0.416 3.510 7.822 8.584 Atomic orbital electron populations 1.22304 1.00862 0.98684 1.00395 1.20990 0.89808 0.86375 1.01882 1.43930 1.73336 1.11743 1.00633 1.19035 1.35822 0.93913 0.89232 0.91954 1.25042 0.97012 0.97841 0.99024 1.69970 1.36560 1.15841 1.30711 0.86449 0.78168 0.77953 0.85178 1.21293 1.21578 1.20405 1.20866 0.88999 0.97926 0.88845 1.24614 0.99698 0.94958 0.93630 0.85727 1.24015 1.02366 1.02001 0.91808 1.26739 0.82719 0.87874 1.06483 1.98713 1.17199 1.96207 1.96600 1.98700 1.85087 1.31297 1.92509 0.94942 0.93222 0.94724 0.96211 0.88194 0.93663 0.91822 0.93209 0.87092 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 37.15 0.38 -2.81 15 2 C 0.14 3.07 5.97 -4.04 -0.02 3.05 15 3 N -0.58 -13.69 2.45 -173.24 -0.43 -14.12 15 4 C -0.25 -6.65 9.49 -15.06 -0.14 -6.79 15 5 H 0.06 1.69 7.92 -52.49 -0.42 1.27 15 6 C 0.01 0.28 4.93 -17.43 -0.09 0.20 15 7 N -0.89 -24.98 11.32 55.49 0.63 -24.35 15 8 Si 0.89 21.65 29.61 -169.99 -5.03 16.62 15 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 C 0.16 3.19 5.89 -4.04 -0.02 3.17 15 13 C -0.11 -1.95 5.85 -90.62 -0.53 -2.48 15 14 H 0.12 2.58 8.14 -51.92 -0.42 2.16 15 15 C -0.16 -2.30 9.93 -26.73 -0.27 -2.57 15 16 C 0.01 0.23 3.62 -26.73 -0.10 0.13 15 17 Cl -0.11 -2.01 29.29 -51.86 -1.52 -3.53 15 18 Cl -0.10 -1.80 27.26 -51.86 -1.41 -3.21 15 19 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 22 H 0.02 0.42 8.10 -51.93 -0.42 0.00 15 23 H 0.10 2.60 5.32 -51.93 -0.28 2.32 15 24 H 0.25 6.95 8.31 -40.82 -0.34 6.61 15 25 H 0.06 1.27 5.96 -51.93 -0.31 0.96 15 26 H 0.05 0.89 8.07 -51.93 -0.42 0.47 15 27 H 0.11 1.36 8.14 -51.93 -0.42 0.94 15 28 H 0.11 1.33 8.14 -51.93 -0.42 0.91 15 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -27.58 269.71 -8.00 -35.58 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -3.51 Total: -2.93 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.79 Total: -8.12 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.20 Total: -38.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 17 Polarization: -3.81 SS G_CDS: -2.93 Total: -6.74 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.58 -8.00 -35.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379312626.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.138 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds