Wall clock time and date at job start Sun Mar 29 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47251 * 2 1 4 4 C 1.36936 * 120.00715 * 265.77081 * 3 2 1 5 5 H 1.07993 * 119.99916 * 146.20166 * 4 3 2 6 6 C 1.38812 * 119.99416 * 326.20350 * 4 3 2 7 7 N 1.31622 * 120.00254 * 337.69510 * 6 4 3 8 8 Si 1.86800 * 119.99910 * 157.69663 * 6 4 3 9 9 H 1.48495 * 109.47236 * 89.99664 * 8 6 4 10 10 H 1.48503 * 109.47315 * 210.00224 * 8 6 4 11 11 H 1.48506 * 109.47113 * 329.99861 * 8 6 4 12 12 C 1.46507 * 119.99484 * 85.76748 * 3 2 1 13 13 C 1.53001 * 109.47088 * 90.00157 * 12 3 2 14 14 H 1.09007 * 115.55014 * 330.67555 * 13 12 3 15 15 C 1.53002 * 117.50160 * 184.99789 * 13 12 3 16 16 C 1.53004 * 117.49956 * 116.37273 * 13 12 3 17 17 Cl 1.80298 * 117.50287 * 214.98165 * 16 13 12 18 18 Cl 1.80296 * 117.49839 * 0.02562 * 16 13 12 19 19 H 1.09003 * 109.47172 * 299.99611 * 1 2 3 20 20 H 1.09000 * 109.47219 * 59.99319 * 1 2 3 21 21 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47686 * 120.00524 * 2 1 3 23 23 H 1.09003 * 109.47172 * 240.00389 * 2 1 3 24 24 H 0.96997 * 119.99891 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46908 * 210.00081 * 12 3 2 26 26 H 1.08995 * 109.47276 * 330.00442 * 12 3 2 27 27 H 1.09003 * 117.49335 * 359.97438 * 15 13 12 28 28 H 1.08999 * 117.49620 * 145.02092 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3290 1.9977 -1.1826 5 1 2.1597 3.0579 -1.2996 6 6 2.8616 1.2599 -2.2308 7 7 3.4705 0.1182 -1.9894 8 14 2.7142 1.8873 -3.9841 9 1 3.8917 2.7321 -4.3082 10 1 2.6592 0.7350 -4.9193 11 1 1.4744 2.6936 -4.1188 12 6 2.1742 2.1030 1.2654 13 6 3.5847 1.8747 1.8123 14 1 4.0451 0.9239 1.5434 15 6 3.9097 2.4519 3.1915 16 6 4.5009 3.0940 1.9348 17 17 6.2597 2.8485 1.6231 18 17 3.8354 4.6899 1.4241 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.8429 -0.3972 -2.7219 25 1 2.0176 3.1685 1.0975 26 1 1.4419 1.7370 1.9850 27 1 3.1187 2.9947 3.7090 28 1 4.5841 1.8811 3.8298 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379312626.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:18 Heat of formation + Delta-G solvation = 14.786737 kcal Electronic energy + Delta-G solvation = -13303.777733 eV Core-core repulsion = 10828.545192 eV Total energy + Delta-G solvation = -2475.232542 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20342 -37.40410 -36.86144 -36.03169 -33.32063 -31.15733 -27.88280 -25.21710 -23.10133 -22.70862 -21.08638 -18.69006 -17.39144 -16.52897 -16.08470 -15.63451 -15.49590 -14.32915 -14.02233 -13.75174 -13.43522 -13.19786 -13.14443 -12.78484 -12.61232 -12.41951 -12.21956 -12.09427 -11.93557 -11.83709 -11.47026 -11.41960 -11.12524 -10.55115 -10.39988 -8.55007 -7.77774 -5.32024 0.35952 1.37363 1.45639 1.48815 1.56476 2.47243 2.55752 3.29249 3.38672 3.50951 3.98825 4.37989 4.57363 4.62650 4.72629 4.86784 4.90127 5.02215 5.08349 5.21747 5.38177 5.58669 5.74932 5.95325 6.52761 7.24003 7.94277 8.42979 9.19660 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.022550 B = 0.010081 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.391210 B = 2776.771431 C = 3242.596240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.593 5.593 4 C -0.247 4.247 5 H 0.053 0.947 6 C -0.036 4.036 7 N -0.913 5.913 8 Si 0.942 3.058 9 H -0.291 1.291 10 H -0.291 1.291 11 H -0.274 1.274 12 C 0.162 3.838 13 C -0.127 4.127 14 H 0.097 0.903 15 C -0.115 4.115 16 C -0.005 4.005 17 Cl -0.123 7.123 18 Cl -0.107 7.107 19 H 0.050 0.950 20 H 0.031 0.969 21 H 0.056 0.944 22 H 0.028 0.972 23 H 0.066 0.934 24 H 0.248 0.752 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 3.573 10.569 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 N -0.313 5.313 4 C -0.378 4.378 5 H 0.071 0.929 6 C -0.233 4.233 7 N -0.558 5.558 8 Si 0.771 3.229 9 H -0.218 1.218 10 H -0.218 1.218 11 H -0.199 1.199 12 C 0.035 3.965 13 C -0.149 4.149 14 H 0.115 0.885 15 C -0.153 4.153 16 C -0.056 4.056 17 Cl -0.096 7.096 18 Cl -0.080 7.080 19 H 0.069 0.931 20 H 0.050 0.950 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.632 3.575 10.376 10.993 hybrid contribution 0.540 0.289 -1.393 1.522 sum -0.092 3.864 8.984 9.780 Atomic orbital electron populations 1.22128 0.98312 1.00149 1.00322 1.20918 0.91765 0.85869 1.00631 1.44081 1.73802 1.12077 1.01327 1.19120 1.34447 0.93520 0.90666 0.92945 1.25572 0.97675 0.98380 1.01634 1.70089 1.37954 1.16850 1.30922 0.85682 0.77898 0.77252 0.82095 1.21770 1.21766 1.19866 1.20910 0.90524 0.97306 0.87727 1.24197 0.98713 0.94268 0.97721 0.88506 1.24172 1.01971 0.99290 0.89913 1.27004 0.82205 0.87351 1.09006 1.98711 1.17818 1.96239 1.96803 1.98698 1.85065 1.31447 1.92795 0.93128 0.95021 0.92531 0.95355 0.91584 0.94277 0.92118 0.90855 0.84301 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 10.24 71.98 0.74 -4.87 15 2 C 0.13 6.00 5.97 86.38 0.52 6.51 15 3 N -0.59 -27.78 2.45 -702.01 -1.72 -29.50 15 4 C -0.25 -13.13 9.49 84.03 0.80 -12.33 15 5 H 0.05 2.85 7.92 -2.91 -0.02 2.83 15 6 C -0.04 -1.96 4.93 84.86 0.42 -1.54 15 7 N -0.91 -52.36 11.32 21.65 0.25 -52.11 15 8 Si 0.94 44.95 29.61 68.60 2.03 46.98 15 9 H -0.29 -13.96 7.11 99.48 0.71 -13.25 15 10 H -0.29 -13.87 7.11 99.48 0.71 -13.16 15 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 15 12 C 0.16 6.11 5.89 86.38 0.51 6.61 15 13 C -0.13 -4.43 5.85 -10.79 -0.06 -4.49 15 14 H 0.10 3.98 8.14 -2.38 -0.02 3.96 15 15 C -0.12 -2.84 9.93 30.60 0.30 -2.53 15 16 C 0.00 -0.15 3.62 30.60 0.11 -0.04 15 17 Cl -0.12 -4.20 29.29 -2.72 -0.08 -4.28 15 18 Cl -0.11 -3.57 27.26 -2.72 -0.07 -3.64 15 19 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 20 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.03 1.19 8.10 -2.39 -0.02 1.17 15 23 H 0.07 3.48 5.32 -2.39 -0.01 3.46 15 24 H 0.25 13.93 8.31 -92.71 -0.77 13.16 15 25 H 0.06 2.32 5.96 -2.39 -0.01 2.31 15 26 H 0.07 2.39 8.07 -2.39 -0.02 2.37 15 27 H 0.14 2.72 8.14 -2.39 -0.02 2.70 15 28 H 0.13 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -59.13 269.71 4.87 -54.25 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 1.14 Total: 0.98 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 3.33 Total: -12.68 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.48 Total: -81.62 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -7.77 SS G_CDS: -0.15 Total: -7.92 kcal Total: -59.13 4.87 -54.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379312626.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.041 kcal (2) G-P(sol) polarization free energy of solvation -59.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds