Wall clock time and date at job start Sun Mar 29 2020 21:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 112.91067 * 2 1 4 4 C 1.53784 * 113.61395 * 131.25090 * 2 1 3 5 5 C 1.53787 * 87.07923 * 89.11282 * 4 2 1 6 6 C 1.53779 * 113.61251 * 228.74619 * 2 1 3 7 7 H 1.09006 * 113.61307 * 156.33907 * 6 2 1 8 8 N 1.46908 * 113.69212 * 25.44592 * 6 2 1 9 9 C 1.46897 * 111.00028 * 157.95938 * 8 6 2 10 10 C 1.52996 * 109.47202 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.47128 * 305.00689 * 10 9 8 12 12 C 1.47201 * 109.46909 * 64.99865 * 10 9 8 13 13 N 5.49624 * 73.65019 * 274.46163 * 2 1 3 14 14 C 1.52993 * 109.47261 * 184.99795 * 10 9 8 15 15 C 1.50709 * 109.47129 * 175.00085 * 14 10 9 16 16 H 1.07997 * 119.99877 * 0.02562 * 15 14 10 17 17 C 1.37872 * 119.99947 * 180.02562 * 15 14 10 18 18 N 1.31518 * 119.99683 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00077 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47172 * 90.00601 * 19 17 15 21 21 H 1.48507 * 109.47257 * 210.00524 * 19 17 15 22 22 H 1.48500 * 109.47322 * 330.00127 * 19 17 15 23 23 H 1.09000 * 109.47004 * 308.25930 * 1 2 3 24 24 H 1.09004 * 109.47300 * 68.24911 * 1 2 3 25 25 H 1.08995 * 109.47631 * 188.25476 * 1 2 3 26 26 H 1.08996 * 109.47441 * 171.75137 * 3 2 1 27 27 H 1.08999 * 109.47127 * 291.74946 * 3 2 1 28 28 H 1.08999 * 109.47590 * 51.74329 * 3 2 1 29 29 H 1.09004 * 113.61451 * 334.56768 * 4 2 1 30 30 H 1.08994 * 113.61477 * 203.66069 * 4 2 1 31 31 H 1.08997 * 113.61028 * 139.98291 * 5 4 2 32 32 H 1.08998 * 113.61447 * 270.79825 * 5 4 2 33 33 H 1.00894 * 110.99568 * 281.91265 * 8 6 2 34 34 H 1.09002 * 109.47172 * 299.99810 * 9 8 6 35 35 H 1.09000 * 109.46864 * 59.99862 * 9 8 6 36 36 H 1.08997 * 109.47197 * 294.99623 * 14 10 9 37 37 H 1.09001 * 109.47188 * 55.00348 * 14 10 9 38 38 H 0.97003 * 119.99280 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 1.0594 5 6 2.0928 -2.0426 0.0000 6 6 2.1459 -0.9291 -1.0593 7 1 3.1591 -0.6499 -1.3489 8 7 1.2693 -1.1721 -2.2129 9 6 2.0467 -1.5978 -3.3843 10 6 1.1017 -1.8401 -4.5629 11 1 0.3310 -2.5531 -4.2701 12 6 0.4707 -0.5693 -4.9551 13 7 -0.0172 0.4103 -5.2580 14 6 1.8941 -2.4021 -5.7448 15 6 0.9466 -2.7556 -6.8623 16 1 -0.1146 -2.5950 -6.7416 17 6 1.4345 -3.2840 -8.0385 18 7 0.6076 -3.5920 -9.0138 19 14 3.2699 -3.5611 -8.2475 20 1 3.6209 -4.9259 -7.7791 21 1 3.6316 -3.4215 -9.6811 22 1 4.0164 -2.5562 -7.4487 23 1 -0.3633 0.6364 0.8069 24 1 -0.3634 0.3808 -0.9545 25 1 -0.3634 -1.0169 0.1475 26 1 3.2038 1.3481 0.1474 27 1 1.9163 1.8922 -0.9545 28 1 1.6810 1.9917 0.8069 29 1 1.4945 -1.1086 1.9146 30 1 3.1590 -0.6499 1.3489 31 1 2.9715 -2.6875 0.0000 32 1 1.1573 -2.6019 0.0010 33 1 0.5548 -1.8480 -1.9879 34 1 2.7630 -0.8195 -3.6475 35 1 2.5805 -2.5190 -3.1509 36 1 2.6050 -1.6535 -6.0945 37 1 2.4328 -3.2955 -5.4291 38 1 0.9510 -3.9634 -9.8415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382365726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:41 Heat of formation + Delta-G solvation = 25.493140 kcal Electronic energy + Delta-G solvation = -16581.351309 eV Core-core repulsion = 14037.691568 eV Total energy + Delta-G solvation = -2543.659741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01398 -36.95833 -34.47350 -33.16005 -31.41475 -30.43703 -27.50771 -27.11457 -24.16357 -22.61280 -22.33838 -21.41684 -18.50342 -16.87190 -16.84014 -15.64211 -15.22445 -14.67201 -14.40162 -14.07370 -13.54752 -13.36713 -13.19883 -12.87667 -12.44830 -12.26997 -12.14525 -12.02505 -11.97337 -11.65737 -11.52046 -11.32558 -11.19572 -10.77480 -10.72413 -10.41332 -10.33002 -10.22596 -9.89503 -9.63041 -9.31428 -8.61665 -8.21702 -6.10543 -4.11082 3.25517 3.34653 3.35671 3.72834 3.81266 4.18923 4.38353 4.42169 4.55062 4.67050 4.78417 4.89545 5.19984 5.24456 5.38837 5.42997 5.47845 5.56939 5.66569 5.66849 5.71230 5.78128 5.86453 5.91145 5.95888 6.04067 6.15384 6.24428 6.29761 6.35297 6.46756 6.92611 7.12084 7.14579 7.48930 7.64265 8.41002 8.57244 8.93291 9.49437 11.02643 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036654 B = 0.005214 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.706677 B = 5368.958765 C = 5709.376730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.170 4.170 6 C 0.077 3.923 7 H 0.096 0.904 8 N -0.679 5.679 9 C 0.064 3.936 10 C 0.019 3.981 11 H 0.103 0.897 12 C 0.253 3.747 13 N -0.471 5.471 14 C -0.005 4.005 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.344 0.656 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.025 0.975 37 H 0.032 0.968 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 2.612 20.075 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.077 4.077 3 C -0.191 4.191 4 C -0.172 4.172 5 C -0.209 4.209 6 C -0.033 4.033 7 H 0.114 0.886 8 N -0.309 5.309 9 C -0.066 4.066 10 C -0.003 4.003 11 H 0.121 0.879 12 C -0.064 4.064 13 N -0.148 5.148 14 C -0.044 4.044 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.189 1.189 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.567 4.683 19.211 20.294 hybrid contribution 1.343 -1.575 0.034 2.070 sum 5.910 3.108 19.245 20.371 Atomic orbital electron populations 1.21434 0.92908 1.01233 1.02229 1.21980 0.96165 0.94361 0.95199 1.21695 0.99814 0.95778 1.01859 1.22924 1.00862 0.96774 0.96689 1.23620 1.02119 0.97161 0.98034 1.23116 0.96456 0.95297 0.88476 0.88625 1.60375 1.14708 1.51295 1.04478 1.22116 0.95546 0.99769 0.89184 1.18951 0.97432 0.87844 0.96055 0.87879 1.28675 0.92626 0.93881 0.91256 1.80973 1.10148 1.13015 1.10659 1.19632 0.96110 0.96251 0.92412 1.21038 0.94970 1.42577 0.97962 0.90788 1.24991 0.97717 0.94746 0.95658 1.69912 1.34783 1.43308 1.05539 0.86819 0.86098 0.79058 0.77588 1.20072 1.21303 1.18870 0.93339 0.91074 0.92985 0.93016 0.92183 0.93021 0.91539 0.90394 0.91677 0.89943 0.83717 0.90620 0.93364 0.95681 0.94992 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.31 37.16 0.31 -0.91 16 2 C -0.08 -0.75 1.37 -153.70 -0.21 -0.96 16 3 C -0.13 -1.31 9.17 37.15 0.34 -0.97 16 4 C -0.13 -1.14 7.21 -25.91 -0.19 -1.33 16 5 C -0.17 -1.51 7.36 -25.92 -0.19 -1.70 16 6 C 0.08 0.81 3.60 -66.90 -0.24 0.57 16 7 H 0.10 1.02 7.85 -51.93 -0.41 0.61 16 8 N -0.68 -8.29 5.36 -105.86 -0.57 -8.85 16 9 C 0.06 0.87 4.91 -3.83 -0.02 0.85 16 10 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 11 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 12 C 0.25 5.24 13.67 -20.78 -0.28 4.96 16 13 N -0.47 -10.78 18.53 42.13 0.78 -10.00 16 14 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 15 C -0.53 -14.24 9.15 -34.44 -0.32 -14.56 16 16 H 0.07 2.20 7.84 -52.49 -0.41 1.78 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 19 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 25 H 0.05 0.49 7.32 -51.93 -0.38 0.11 16 26 H 0.05 0.46 8.01 -51.93 -0.42 0.04 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.08 0.62 8.01 -51.93 -0.42 0.20 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.72 7.32 -51.93 -0.38 0.34 16 33 H 0.34 3.87 8.06 -39.29 -0.32 3.55 16 34 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 37 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -30.67 312.58 -6.63 -37.30 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.45 Total: -0.55 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.21 Total: -12.24 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.99 Total: -45.23 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.67 -6.63 -37.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382365726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.797 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds