Wall clock time and date at job start Sun Mar 29 2020 21:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 112.91067 * 2 1 4 4 C 1.53784 * 113.61395 * 131.25090 * 2 1 3 5 5 C 1.53787 * 87.07923 * 89.11282 * 4 2 1 6 6 C 1.53779 * 113.61251 * 228.74619 * 2 1 3 7 7 H 1.09006 * 113.61307 * 156.33907 * 6 2 1 8 8 N 1.46908 * 113.69212 * 25.44592 * 6 2 1 9 9 C 1.46897 * 111.00028 * 157.95938 * 8 6 2 10 10 C 1.52996 * 109.47202 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.47128 * 305.00689 * 10 9 8 12 12 C 1.47201 * 109.46909 * 64.99865 * 10 9 8 13 13 N 5.49624 * 73.65019 * 274.46163 * 2 1 3 14 14 C 1.52993 * 109.47261 * 184.99795 * 10 9 8 15 15 C 1.50709 * 109.47129 * 175.00085 * 14 10 9 16 16 H 1.07997 * 119.99877 * 0.02562 * 15 14 10 17 17 C 1.37872 * 119.99947 * 180.02562 * 15 14 10 18 18 N 1.31518 * 119.99683 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00077 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47172 * 90.00601 * 19 17 15 21 21 H 1.48507 * 109.47257 * 210.00524 * 19 17 15 22 22 H 1.48500 * 109.47322 * 330.00127 * 19 17 15 23 23 H 1.09000 * 109.47004 * 308.25930 * 1 2 3 24 24 H 1.09004 * 109.47300 * 68.24911 * 1 2 3 25 25 H 1.08995 * 109.47631 * 188.25476 * 1 2 3 26 26 H 1.08996 * 109.47441 * 171.75137 * 3 2 1 27 27 H 1.08999 * 109.47127 * 291.74946 * 3 2 1 28 28 H 1.08999 * 109.47590 * 51.74329 * 3 2 1 29 29 H 1.09004 * 113.61451 * 334.56768 * 4 2 1 30 30 H 1.08994 * 113.61477 * 203.66069 * 4 2 1 31 31 H 1.08997 * 113.61028 * 139.98291 * 5 4 2 32 32 H 1.08998 * 113.61447 * 270.79825 * 5 4 2 33 33 H 1.00894 * 110.99568 * 281.91265 * 8 6 2 34 34 H 1.09002 * 109.47172 * 299.99810 * 9 8 6 35 35 H 1.09000 * 109.46864 * 59.99862 * 9 8 6 36 36 H 1.08997 * 109.47197 * 294.99623 * 14 10 9 37 37 H 1.09001 * 109.47188 * 55.00348 * 14 10 9 38 38 H 0.97003 * 119.99280 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 1.0594 5 6 2.0928 -2.0426 0.0000 6 6 2.1459 -0.9291 -1.0593 7 1 3.1591 -0.6499 -1.3489 8 7 1.2693 -1.1721 -2.2129 9 6 2.0467 -1.5978 -3.3843 10 6 1.1017 -1.8401 -4.5629 11 1 0.3310 -2.5531 -4.2701 12 6 0.4707 -0.5693 -4.9551 13 7 -0.0172 0.4103 -5.2580 14 6 1.8941 -2.4021 -5.7448 15 6 0.9466 -2.7556 -6.8623 16 1 -0.1146 -2.5950 -6.7416 17 6 1.4345 -3.2840 -8.0385 18 7 0.6076 -3.5920 -9.0138 19 14 3.2699 -3.5611 -8.2475 20 1 3.6209 -4.9259 -7.7791 21 1 3.6316 -3.4215 -9.6811 22 1 4.0164 -2.5562 -7.4487 23 1 -0.3633 0.6364 0.8069 24 1 -0.3634 0.3808 -0.9545 25 1 -0.3634 -1.0169 0.1475 26 1 3.2038 1.3481 0.1474 27 1 1.9163 1.8922 -0.9545 28 1 1.6810 1.9917 0.8069 29 1 1.4945 -1.1086 1.9146 30 1 3.1590 -0.6499 1.3489 31 1 2.9715 -2.6875 0.0000 32 1 1.1573 -2.6019 0.0010 33 1 0.5548 -1.8480 -1.9879 34 1 2.7630 -0.8195 -3.6475 35 1 2.5805 -2.5190 -3.1509 36 1 2.6050 -1.6535 -6.0945 37 1 2.4328 -3.2955 -5.4291 38 1 0.9510 -3.9634 -9.8415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382365726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:40 Heat of formation + Delta-G solvation = 6.442278 kcal Electronic energy + Delta-G solvation = -16582.177417 eV Core-core repulsion = 14037.691568 eV Total energy + Delta-G solvation = -2544.485848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78975 -38.44576 -35.96557 -34.93657 -33.00345 -31.24973 -28.80368 -28.22010 -25.28053 -23.52690 -23.29680 -23.14251 -19.40013 -18.86250 -18.21920 -16.68237 -16.22583 -16.07542 -15.51272 -15.21312 -15.00495 -14.75567 -14.31968 -14.04688 -13.85658 -13.79452 -13.22770 -13.15674 -13.01438 -13.00127 -12.82316 -12.36590 -12.35824 -12.20517 -12.06605 -11.76096 -11.66017 -11.39826 -11.30467 -10.97667 -10.75095 -10.72615 -9.10535 -8.24436 -6.29993 1.42217 1.45743 1.55837 2.07746 2.15005 2.41317 3.11829 3.23523 3.36396 3.69041 3.81119 3.95863 4.05848 4.23046 4.36798 4.46322 4.66194 4.72048 4.74460 4.83568 4.86277 4.91361 4.96344 4.99760 5.08166 5.15070 5.20647 5.24412 5.30686 5.38271 5.46432 5.58087 5.64161 5.68595 6.20866 6.29242 6.60660 6.77780 6.92701 7.34601 8.92650 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036654 B = 0.005214 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.706677 B = 5368.958765 C = 5709.376730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.162 4.162 6 C 0.072 3.928 7 H 0.096 0.904 8 N -0.691 5.691 9 C 0.077 3.923 10 C 0.024 3.976 11 H 0.115 0.885 12 C 0.263 3.737 13 N -0.517 5.517 14 C -0.003 4.003 15 C -0.531 4.531 16 H 0.028 0.972 17 C 0.003 3.997 18 N -0.955 5.955 19 Si 0.949 3.051 20 H -0.256 1.256 21 H -0.296 1.296 22 H -0.239 1.239 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.349 0.651 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.063 0.937 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 1.806 22.371 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.190 4.190 4 C -0.163 4.163 5 C -0.201 4.201 6 C -0.038 4.038 7 H 0.115 0.885 8 N -0.322 5.322 9 C -0.053 4.053 10 C 0.003 3.997 11 H 0.133 0.867 12 C -0.053 4.053 13 N -0.195 5.195 14 C -0.042 4.042 15 C -0.569 4.569 16 H 0.047 0.953 17 C -0.194 4.194 18 N -0.595 5.595 19 Si 0.772 3.228 20 H -0.180 1.180 21 H -0.222 1.222 22 H -0.162 1.162 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.021 3.883 21.550 22.995 hybrid contribution 0.456 -1.288 -0.665 1.519 sum 7.477 2.596 20.885 22.334 Atomic orbital electron populations 1.21384 0.93403 1.01631 1.01050 1.22036 0.95829 0.94518 0.95915 1.21686 1.00580 0.95841 1.00917 1.22884 1.01327 0.95728 0.96386 1.23563 1.02624 0.96883 0.97043 1.23205 0.96129 0.96425 0.88057 0.88546 1.60315 1.15264 1.51707 1.04870 1.21946 0.94354 1.01028 0.87966 1.19075 0.98044 0.86244 0.96386 0.86711 1.29427 0.91678 0.94128 0.90074 1.80968 1.11676 1.14789 1.12064 1.19581 0.95316 0.97511 0.91770 1.21416 0.94080 1.41538 0.99897 0.95333 1.26042 1.03411 0.94653 0.95259 1.70097 1.37557 1.45425 1.06470 0.85679 0.79335 0.80429 0.77365 1.18038 1.22220 1.16171 0.92717 0.93557 0.92270 0.91995 0.94291 0.92395 0.90892 0.89472 0.90877 0.89693 0.83131 0.90870 0.90685 0.95656 0.91930 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.31 71.98 0.60 -1.63 16 2 C -0.08 -1.44 1.37 -51.66 -0.07 -1.51 16 3 C -0.13 -2.40 9.17 71.98 0.66 -1.74 16 4 C -0.13 -1.73 7.21 31.12 0.22 -1.51 16 5 C -0.16 -2.34 7.36 31.12 0.23 -2.11 16 6 C 0.07 1.31 3.60 45.44 0.16 1.48 16 7 H 0.10 1.76 7.85 -2.38 -0.02 1.74 16 8 N -0.69 -15.39 5.36 -488.84 -2.62 -18.01 16 9 C 0.08 1.88 4.91 86.30 0.42 2.30 16 10 C 0.02 0.81 2.35 -12.60 -0.03 0.78 16 11 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 12 C 0.26 10.89 13.67 89.45 1.22 12.12 16 13 N -0.52 -24.09 18.53 20.00 0.37 -23.72 16 14 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 15 C -0.53 -28.82 9.15 25.60 0.23 -28.59 16 16 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 17 C 0.00 0.16 5.47 84.65 0.46 0.63 16 18 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 19 Si 0.95 41.58 27.47 68.60 1.88 43.47 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 1.10 7.89 -2.39 -0.02 1.08 16 25 H 0.06 1.01 7.32 -2.39 -0.02 0.99 16 26 H 0.06 0.97 8.01 -2.39 -0.02 0.95 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 30 H 0.09 1.07 8.01 -2.39 -0.02 1.05 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.20 7.32 -2.39 -0.02 1.18 16 33 H 0.35 7.08 8.06 -89.70 -0.72 6.36 16 34 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.03 1.03 7.20 -2.39 -0.02 1.02 16 37 H 0.06 2.21 7.57 -2.39 -0.02 2.19 16 38 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -68.19 312.58 4.41 -63.78 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.25 Total: 13.33 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 4.22 Total: -19.79 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -1.95 Total: -100.80 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.47 kcal Total: -68.19 4.41 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382365726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.225 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds