Wall clock time and date at job start Sun Mar 29 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 112.90579 * 2 1 4 4 C 1.53953 * 113.61091 * 228.67421 * 2 1 3 5 5 C 1.53773 * 87.11242 * 270.84217 * 4 2 1 6 6 C 1.53776 * 113.61733 * 131.25116 * 2 1 3 7 7 H 1.08997 * 113.61890 * 203.74739 * 6 2 1 8 8 N 1.46903 * 113.61605 * 334.57018 * 6 2 1 9 9 C 1.46897 * 111.00285 * 203.47026 * 8 6 2 10 10 C 1.53001 * 109.47259 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46753 * 304.99784 * 10 9 8 12 12 C 1.47197 * 109.47050 * 64.99833 * 10 9 8 13 13 N 5.91956 * 70.62595 * 133.57591 * 2 1 3 14 14 C 1.53004 * 109.46855 * 184.99987 * 10 9 8 15 15 C 1.50695 * 109.46637 * 175.00152 * 14 10 9 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 10 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 10 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47093 * 60.00328 * 19 17 15 21 21 H 1.48495 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47239 * 300.00048 * 19 17 15 23 23 H 1.09004 * 109.46697 * 288.74848 * 1 2 3 24 24 H 1.08996 * 109.47087 * 48.74980 * 1 2 3 25 25 H 1.09001 * 109.46503 * 168.75090 * 1 2 3 26 26 H 1.08994 * 109.46938 * 191.25666 * 3 2 1 27 27 H 1.09006 * 109.47167 * 311.25211 * 3 2 1 28 28 H 1.08997 * 109.46942 * 71.25053 * 3 2 1 29 29 H 1.09003 * 113.53664 * 156.28487 * 4 2 1 30 30 H 1.09003 * 113.74558 * 25.42849 * 4 2 1 31 31 H 1.09006 * 113.61322 * 220.09373 * 5 4 2 32 32 H 1.08997 * 113.69075 * 89.19881 * 5 4 2 33 33 H 1.00906 * 111.00209 * 79.50945 * 8 6 2 34 34 H 1.09003 * 109.46961 * 59.99446 * 9 8 6 35 35 H 1.09002 * 109.47006 * 299.99675 * 9 8 6 36 36 H 1.08992 * 109.47421 * 55.00199 * 14 10 9 37 37 H 1.08997 * 109.46955 * 294.99652 * 14 10 9 38 38 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1467 -0.9315 -1.0593 5 6 2.0950 -2.0438 0.0012 6 6 2.1462 -0.9290 1.0593 7 1 3.1587 -0.6490 1.3500 8 7 1.2682 -1.1711 2.2119 9 6 2.0471 -1.5639 3.3938 10 6 1.1004 -1.8062 4.5711 11 1 0.4851 -0.9207 4.7307 12 6 0.2342 -2.9588 4.2750 13 7 -0.4336 -3.8494 4.0457 14 6 1.9180 -2.0932 5.8322 15 6 0.9920 -2.2104 7.0152 16 1 -0.0736 -2.0964 6.8804 17 6 1.5045 -2.4693 8.2688 18 7 2.8014 -2.6134 8.4321 19 14 0.3566 -2.6138 9.7355 20 1 -0.6042 -3.7224 9.5048 21 1 1.1500 -2.8925 10.9594 22 1 -0.3885 -1.3409 9.9083 23 1 -0.3633 0.3303 0.9732 24 1 -0.3633 0.6776 -0.7726 25 1 -0.3632 -1.0080 -0.2005 26 1 3.1954 1.3517 -0.2006 27 1 1.6428 2.0078 -0.7727 28 1 1.9627 1.8726 0.9731 29 1 3.1594 -0.6511 -1.3491 30 1 1.4968 -1.1137 -1.9153 31 1 2.9748 -2.6874 0.0022 32 1 1.1603 -2.6045 0.0025 33 1 0.5678 -1.8640 1.9938 34 1 2.7470 -0.7680 3.6486 35 1 2.5997 -2.4781 3.1774 36 1 2.6226 -1.2791 6.0015 37 1 2.4655 -3.0271 5.7054 38 1 3.1619 -2.7952 9.3141 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382365727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:42 Heat of formation + Delta-G solvation = 20.885073 kcal Electronic energy + Delta-G solvation = -16534.401230 eV Core-core repulsion = 13990.541668 eV Total energy + Delta-G solvation = -2543.859562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95010 -36.96549 -34.44875 -33.21373 -31.22792 -30.34753 -27.44050 -26.68451 -24.11991 -22.56761 -22.31532 -21.74941 -18.34986 -16.67141 -16.48892 -15.62086 -15.39759 -14.66873 -14.40033 -14.18550 -13.34627 -13.19670 -13.08525 -12.85958 -12.47288 -12.23717 -12.08509 -11.95025 -11.78874 -11.61347 -11.45097 -11.21295 -11.00023 -10.80157 -10.66662 -10.58544 -10.30097 -10.15278 -10.10826 -9.48615 -9.20944 -8.44503 -8.17220 -6.08802 -4.11954 3.31863 3.35944 3.39606 3.57512 3.62803 4.24546 4.42662 4.46525 4.60750 4.71471 4.80938 4.93379 5.24252 5.29140 5.44625 5.50456 5.54225 5.62808 5.70710 5.73247 5.76345 5.84235 5.89612 5.98672 6.05783 6.17270 6.19795 6.34796 6.42728 6.49779 6.57097 7.21196 7.44155 7.50204 7.54727 7.86084 8.24062 8.40925 8.92385 9.53408 11.02057 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040617 B = 0.004778 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.199347 B = 5858.622853 C = 6015.854070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.134 4.134 5 C -0.172 4.172 6 C 0.076 3.924 7 H 0.098 0.902 8 N -0.678 5.678 9 C 0.067 3.933 10 C 0.006 3.994 11 H 0.110 0.890 12 C 0.242 3.758 13 N -0.478 5.478 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.339 0.661 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 6.685 -16.575 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.076 4.076 3 C -0.191 4.191 4 C -0.172 4.172 5 C -0.211 4.211 6 C -0.034 4.034 7 H 0.116 0.884 8 N -0.308 5.308 9 C -0.063 4.063 10 C -0.016 4.016 11 H 0.128 0.872 12 C -0.075 4.075 13 N -0.155 5.155 14 C -0.006 4.006 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.158 0.842 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.057 5.969 -16.577 17.618 hybrid contribution -0.040 -0.801 0.804 1.136 sum -0.097 5.167 -15.773 16.598 Atomic orbital electron populations 1.21454 0.92998 1.01064 1.02402 1.22005 0.96097 0.94374 0.95171 1.21700 0.99837 0.95589 1.01942 1.22960 1.00879 0.96727 0.96631 1.23615 1.02052 0.97251 0.98211 1.23129 0.96530 0.95212 0.88573 0.88413 1.60476 1.15536 1.50536 1.04229 1.22111 0.95380 0.99891 0.88915 1.19343 0.94276 0.90780 0.97179 0.87180 1.29362 0.92902 0.94155 0.91061 1.81052 1.11309 1.11832 1.11329 1.19153 0.94826 0.98319 0.88289 1.21116 0.93352 1.49599 0.92444 0.92575 1.24951 0.95035 0.94951 0.98987 1.69929 1.11221 1.48504 1.23414 0.86654 0.80813 0.78778 0.81835 1.20282 1.21190 1.20004 0.90857 0.93297 0.93219 0.92985 0.93064 0.91981 0.90327 0.91602 0.91696 0.90210 0.84163 0.89152 0.94792 0.94216 0.95814 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.41 37.16 0.31 -0.94 16 2 C -0.08 -0.76 1.37 -153.60 -0.21 -0.97 16 3 C -0.13 -1.24 9.20 37.16 0.34 -0.90 16 4 C -0.13 -1.24 7.20 -25.83 -0.19 -1.43 16 5 C -0.17 -1.81 7.36 -25.92 -0.19 -2.00 16 6 C 0.08 0.86 3.61 -66.90 -0.24 0.62 16 7 H 0.10 1.08 7.84 -51.93 -0.41 0.68 16 8 N -0.68 -8.93 5.55 -105.87 -0.59 -9.52 16 9 C 0.07 0.99 4.97 -3.82 -0.02 0.97 16 10 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 11 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 12 C 0.24 4.91 12.98 -20.74 -0.27 4.64 16 13 N -0.48 -10.47 18.54 42.17 0.78 -9.69 16 14 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 15 C -0.53 -14.09 8.60 -34.44 -0.30 -14.39 16 16 H 0.06 1.49 7.59 -52.48 -0.40 1.10 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.07 0.84 7.77 -51.93 -0.40 0.44 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.52 7.35 -51.93 -0.38 0.13 16 26 H 0.05 0.44 7.95 -51.93 -0.41 0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.66 7.96 -51.93 -0.41 0.25 16 30 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.89 7.35 -51.93 -0.38 0.50 16 33 H 0.34 4.71 7.16 -39.29 -0.28 4.43 16 34 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -28.73 314.88 -6.99 -35.72 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.44 Total: -0.51 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.21 Total: -12.22 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.93 Total: -44.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.73 -6.99 -35.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382365727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.603 kcal (2) G-P(sol) polarization free energy of solvation -28.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds