Wall clock time and date at job start Sun Mar 29 2020 21:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 112.90579 * 2 1 4 4 C 1.53953 * 113.61091 * 228.67421 * 2 1 3 5 5 C 1.53773 * 87.11242 * 270.84217 * 4 2 1 6 6 C 1.53776 * 113.61733 * 131.25116 * 2 1 3 7 7 H 1.08997 * 113.61890 * 203.74739 * 6 2 1 8 8 N 1.46903 * 113.61605 * 334.57018 * 6 2 1 9 9 C 1.46897 * 111.00285 * 203.47026 * 8 6 2 10 10 C 1.53001 * 109.47259 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46753 * 304.99784 * 10 9 8 12 12 C 1.47197 * 109.47050 * 64.99833 * 10 9 8 13 13 N 5.91956 * 70.62595 * 133.57591 * 2 1 3 14 14 C 1.53004 * 109.46855 * 184.99987 * 10 9 8 15 15 C 1.50695 * 109.46637 * 175.00152 * 14 10 9 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 10 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 10 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47093 * 60.00328 * 19 17 15 21 21 H 1.48495 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47239 * 300.00048 * 19 17 15 23 23 H 1.09004 * 109.46697 * 288.74848 * 1 2 3 24 24 H 1.08996 * 109.47087 * 48.74980 * 1 2 3 25 25 H 1.09001 * 109.46503 * 168.75090 * 1 2 3 26 26 H 1.08994 * 109.46938 * 191.25666 * 3 2 1 27 27 H 1.09006 * 109.47167 * 311.25211 * 3 2 1 28 28 H 1.08997 * 109.46942 * 71.25053 * 3 2 1 29 29 H 1.09003 * 113.53664 * 156.28487 * 4 2 1 30 30 H 1.09003 * 113.74558 * 25.42849 * 4 2 1 31 31 H 1.09006 * 113.61322 * 220.09373 * 5 4 2 32 32 H 1.08997 * 113.69075 * 89.19881 * 5 4 2 33 33 H 1.00906 * 111.00209 * 79.50945 * 8 6 2 34 34 H 1.09003 * 109.46961 * 59.99446 * 9 8 6 35 35 H 1.09002 * 109.47006 * 299.99675 * 9 8 6 36 36 H 1.08992 * 109.47421 * 55.00199 * 14 10 9 37 37 H 1.08997 * 109.46955 * 294.99652 * 14 10 9 38 38 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1467 -0.9315 -1.0593 5 6 2.0950 -2.0438 0.0012 6 6 2.1462 -0.9290 1.0593 7 1 3.1587 -0.6490 1.3500 8 7 1.2682 -1.1711 2.2119 9 6 2.0471 -1.5639 3.3938 10 6 1.1004 -1.8062 4.5711 11 1 0.4851 -0.9207 4.7307 12 6 0.2342 -2.9588 4.2750 13 7 -0.4336 -3.8494 4.0457 14 6 1.9180 -2.0932 5.8322 15 6 0.9920 -2.2104 7.0152 16 1 -0.0736 -2.0964 6.8804 17 6 1.5045 -2.4693 8.2688 18 7 2.8014 -2.6134 8.4321 19 14 0.3566 -2.6138 9.7355 20 1 -0.6042 -3.7224 9.5048 21 1 1.1500 -2.8925 10.9594 22 1 -0.3885 -1.3409 9.9083 23 1 -0.3633 0.3303 0.9732 24 1 -0.3633 0.6776 -0.7726 25 1 -0.3632 -1.0080 -0.2005 26 1 3.1954 1.3517 -0.2006 27 1 1.6428 2.0078 -0.7727 28 1 1.9627 1.8726 0.9731 29 1 3.1594 -0.6511 -1.3491 30 1 1.4968 -1.1137 -1.9153 31 1 2.9748 -2.6874 0.0022 32 1 1.1603 -2.6045 0.0025 33 1 0.5678 -1.8640 1.9938 34 1 2.7470 -0.7680 3.6486 35 1 2.5997 -2.4781 3.1774 36 1 2.6226 -1.2791 6.0015 37 1 2.4655 -3.0271 5.7054 38 1 3.1619 -2.7952 9.3141 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382365727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:42 Heat of formation + Delta-G solvation = 4.956675 kcal Electronic energy + Delta-G solvation = -16535.091937 eV Core-core repulsion = 13990.541668 eV Total energy + Delta-G solvation = -2544.550269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81477 -38.50848 -35.97712 -35.00521 -32.78086 -31.23747 -28.45584 -28.14491 -25.40307 -23.66471 -23.53681 -23.21929 -19.24307 -18.47198 -18.21303 -16.74228 -16.57071 -16.27709 -15.42931 -15.24753 -14.69854 -14.61240 -14.42291 -13.99734 -13.92912 -13.65622 -13.38222 -13.08302 -13.04239 -12.79225 -12.75584 -12.50921 -12.44172 -12.32656 -12.20892 -11.97618 -11.54467 -11.40475 -11.28448 -10.98658 -10.73714 -10.54818 -9.21514 -8.19331 -6.27740 1.41476 1.42560 1.49950 1.93309 1.95333 2.41677 3.15622 3.21213 3.25295 3.65728 3.78565 3.90831 4.04116 4.22686 4.42382 4.49417 4.59665 4.67769 4.76933 4.82291 4.95066 4.97898 4.98068 5.00754 5.08400 5.11745 5.23548 5.31966 5.38945 5.46948 5.59706 5.63555 5.67461 5.79283 6.13120 6.24221 6.40049 6.74735 6.87025 7.40813 8.91393 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040617 B = 0.004778 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.199347 B = 5858.622853 C = 6015.854070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.173 4.173 6 C 0.069 3.931 7 H 0.103 0.897 8 N -0.677 5.677 9 C 0.079 3.921 10 C 0.019 3.981 11 H 0.122 0.878 12 C 0.252 3.748 13 N -0.506 5.506 14 C 0.039 3.961 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.281 1.281 21 H -0.281 1.281 22 H -0.263 1.263 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.335 0.665 34 H 0.103 0.897 35 H 0.030 0.970 36 H 0.036 0.964 37 H -0.001 1.001 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 7.616 -17.482 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.075 4.075 3 C -0.189 4.189 4 C -0.162 4.162 5 C -0.212 4.212 6 C -0.042 4.042 7 H 0.121 0.879 8 N -0.306 5.306 9 C -0.051 4.051 10 C -0.003 4.003 11 H 0.140 0.860 12 C -0.064 4.064 13 N -0.183 5.183 14 C 0.000 4.000 15 C -0.579 4.579 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.207 1.207 21 H -0.207 1.207 22 H -0.188 1.188 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.207 6.913 -17.498 18.816 hybrid contribution 0.008 -1.094 1.058 1.522 sum -0.199 5.819 -16.441 17.441 Atomic orbital electron populations 1.21432 0.93312 1.01034 1.02004 1.22006 0.95867 0.94854 0.94803 1.21685 1.00466 0.94973 1.01741 1.22933 1.01635 0.95379 0.96240 1.23590 1.01697 0.97375 0.98576 1.23295 0.96560 0.96216 0.88087 0.87942 1.60483 1.15597 1.50052 1.04450 1.21950 0.94571 1.00278 0.88340 1.19243 0.94093 0.90288 0.96674 0.86019 1.29701 0.92437 0.94023 0.90273 1.81050 1.12333 1.12614 1.12322 1.18977 0.94572 0.96901 0.89547 1.21535 0.93771 1.48839 0.93750 0.92831 1.25712 0.96350 0.94936 1.01691 1.70025 1.12656 1.49629 1.24015 0.85750 0.78982 0.78909 0.78947 1.20692 1.20672 1.18759 0.92219 0.92141 0.93654 0.92100 0.92171 0.92928 0.89090 0.90967 0.91607 0.91018 0.84671 0.87836 0.95169 0.94545 0.98243 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.41 71.99 0.61 -1.70 16 2 C -0.07 -1.34 1.37 -51.59 -0.07 -1.42 16 3 C -0.13 -2.14 9.20 71.98 0.66 -1.48 16 4 C -0.12 -2.00 7.20 31.18 0.22 -1.77 16 5 C -0.17 -3.38 7.36 31.12 0.23 -3.15 16 6 C 0.07 1.43 3.61 45.44 0.16 1.59 16 7 H 0.10 2.06 7.84 -2.39 -0.02 2.04 16 8 N -0.68 -16.97 5.55 -488.85 -2.72 -19.69 16 9 C 0.08 2.25 4.97 86.30 0.43 2.68 16 10 C 0.02 0.68 2.42 -12.60 -0.03 0.65 16 11 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 12 C 0.25 10.12 12.98 89.44 1.16 11.29 16 13 N -0.51 -22.02 18.54 20.01 0.37 -21.65 16 14 C 0.04 1.80 4.42 29.85 0.13 1.94 16 15 C -0.54 -28.85 8.60 25.60 0.22 -28.63 16 16 H 0.05 2.83 7.59 -2.91 -0.02 2.80 16 17 C 0.01 0.67 5.46 84.66 0.46 1.13 16 18 N -0.92 -53.24 13.29 21.45 0.28 -52.96 16 19 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 23 H 0.06 1.30 7.77 -2.38 -0.02 1.28 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.04 0.89 7.35 -2.39 -0.02 0.87 16 26 H 0.06 0.88 7.95 -2.39 -0.02 0.86 16 27 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.26 7.96 -2.39 -0.02 1.25 16 30 H 0.07 1.10 8.11 -2.39 -0.02 1.08 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.52 7.35 -2.39 -0.02 1.50 16 33 H 0.33 9.00 7.16 -89.69 -0.64 8.35 16 34 H 0.10 2.72 8.13 -2.39 -0.02 2.70 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -59.99 314.88 4.54 -55.46 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.38 Total: 12.09 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.19 Total: -18.86 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -2.06 Total: -94.30 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -59.99 4.54 -55.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382365727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -59.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds