Wall clock time and date at job start Sun Mar 29 2020 21:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 112.90549 * 2 1 4 4 C 1.53781 * 113.61366 * 228.75181 * 2 1 3 5 5 C 1.53781 * 87.07780 * 270.88075 * 4 2 1 6 6 C 1.53774 * 87.08595 * 334.56742 * 5 4 2 7 7 H 1.08998 * 113.61967 * 140.05952 * 6 5 4 8 8 N 1.46902 * 113.61375 * 270.88839 * 6 5 4 9 9 C 1.46906 * 110.99573 * 255.49035 * 8 6 5 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.46898 * 54.99835 * 10 9 8 12 12 C 1.47200 * 109.47099 * 295.00398 * 10 9 8 13 13 N 5.90772 * 156.80982 * 140.37385 * 2 1 3 14 14 C 1.52995 * 109.47327 * 174.99789 * 10 9 8 15 15 C 1.50700 * 109.47341 * 184.99922 * 14 10 9 16 16 H 1.07996 * 119.99792 * 0.02562 * 15 14 10 17 17 C 1.37873 * 119.99738 * 180.02562 * 15 14 10 18 18 N 1.31516 * 120.00626 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46863 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47487 * 119.99893 * 19 17 15 22 22 H 1.48502 * 109.47230 * 240.00594 * 19 17 15 23 23 H 1.08996 * 109.46581 * 288.74814 * 1 2 3 24 24 H 1.09001 * 109.47363 * 48.74847 * 1 2 3 25 25 H 1.08997 * 109.46921 * 168.74955 * 1 2 3 26 26 H 1.08999 * 109.46602 * 191.25147 * 3 2 1 27 27 H 1.08998 * 109.47144 * 311.25333 * 3 2 1 28 28 H 1.09000 * 109.47089 * 71.25411 * 3 2 1 29 29 H 1.08999 * 113.61420 * 156.33721 * 4 2 1 30 30 H 1.09000 * 113.61703 * 25.43005 * 4 2 1 31 31 H 1.09004 * 113.61225 * 220.01581 * 5 4 2 32 32 H 1.09003 * 113.61395 * 89.12126 * 5 4 2 33 33 H 1.00896 * 111.00219 * 19.44675 * 8 6 5 34 34 H 1.09002 * 109.46991 * 299.99841 * 9 8 6 35 35 H 1.09000 * 109.47202 * 60.00133 * 9 8 6 36 36 H 1.09002 * 109.47542 * 305.00684 * 14 10 9 37 37 H 1.09006 * 109.46874 * 65.00184 * 14 10 9 38 38 H 0.97002 * 120.00109 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 2.0930 -2.0425 0.0000 6 6 2.1461 -0.9291 1.0593 7 1 1.4957 -1.1093 1.9152 8 7 3.5114 -0.5528 1.4496 9 6 3.8510 -1.0994 2.7702 10 6 5.2772 -0.6879 3.1411 11 1 5.3691 0.3967 3.0829 12 6 6.2269 -1.3117 2.2053 13 7 6.9604 -1.7918 1.4837 14 6 5.5871 -1.1502 4.5662 15 6 6.9443 -0.6394 4.9761 16 1 7.5273 -0.0442 4.2890 17 6 7.4417 -0.9320 6.2283 18 7 6.7319 -1.6573 7.0649 19 14 9.1238 -0.2983 6.7367 20 1 9.7144 0.4865 5.6228 21 1 8.9850 0.5685 7.9344 22 1 10.0095 -1.4466 7.0565 23 1 -0.3632 0.3303 0.9731 24 1 -0.3634 0.6776 -0.7726 25 1 -0.3633 -1.0079 -0.2005 26 1 3.1954 1.3517 -0.2005 27 1 1.6428 2.0078 -0.7726 28 1 1.9628 1.8726 0.9731 29 1 3.1591 -0.6498 -1.3490 30 1 1.4946 -1.1086 -1.9146 31 1 2.9718 -2.6874 -0.0001 32 1 1.1569 -2.6010 -0.0001 33 1 4.1804 -0.8465 0.7537 34 1 3.1553 -0.7111 3.5140 35 1 3.7829 -2.1869 2.7417 36 1 4.8310 -0.7599 5.2474 37 1 5.5823 -2.2396 4.6039 38 1 7.0817 -1.8628 7.9460 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382365729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:46 Heat of formation + Delta-G solvation = 22.507673 kcal Electronic energy + Delta-G solvation = -16559.954394 eV Core-core repulsion = 14016.165193 eV Total energy + Delta-G solvation = -2543.789201 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04674 -36.96496 -34.44934 -33.20969 -31.28207 -30.17030 -27.42687 -26.56427 -24.37717 -22.85107 -22.16668 -21.76473 -18.04400 -16.70896 -16.58703 -15.73603 -15.19140 -14.62792 -14.31272 -14.20522 -13.70338 -13.17790 -13.02926 -12.92018 -12.60926 -12.33762 -12.11946 -12.04572 -11.79710 -11.42663 -11.31481 -11.17242 -11.03518 -10.79972 -10.69445 -10.52952 -10.30002 -10.10683 -9.99061 -9.51483 -9.20099 -8.45951 -8.24118 -6.09717 -4.12763 3.28553 3.36748 3.41477 3.56678 3.62116 4.10788 4.41585 4.46923 4.63748 4.76255 4.80147 4.96938 5.22916 5.28458 5.43365 5.53143 5.55172 5.63652 5.69541 5.74651 5.77193 5.84702 5.90639 5.97941 6.10490 6.15274 6.20974 6.36180 6.43936 6.52312 6.56815 7.18878 7.43361 7.47539 7.53427 7.85621 8.23174 8.39699 8.92126 9.52857 11.01220 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.041795 B = 0.004781 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.774252 B = 5855.108557 C = 5998.443797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.119 4.119 4 C -0.133 4.133 5 C -0.173 4.173 6 C 0.077 3.923 7 H 0.084 0.916 8 N -0.669 5.669 9 C 0.068 3.932 10 C 0.006 3.994 11 H 0.111 0.889 12 C 0.241 3.759 13 N -0.477 5.477 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.339 0.661 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 2.948 -11.674 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.176 4.176 4 C -0.170 4.170 5 C -0.213 4.213 6 C -0.035 4.035 7 H 0.102 0.898 8 N -0.298 5.298 9 C -0.061 4.061 10 C -0.016 4.016 11 H 0.129 0.871 12 C -0.075 4.075 13 N -0.154 5.154 14 C -0.006 4.006 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.261 2.769 -12.326 17.605 hybrid contribution 0.882 -0.568 0.477 1.152 sum -11.379 2.201 -11.849 16.575 Atomic orbital electron populations 1.21566 0.93443 1.01484 1.01888 1.21937 0.94805 0.95475 0.95995 1.21481 1.00818 0.94283 1.01055 1.23024 1.01016 0.96439 0.96529 1.23595 1.02132 0.97156 0.98376 1.22707 0.91170 0.93638 0.95945 0.89763 1.60401 1.02146 1.62722 1.04575 1.22114 0.96004 0.97451 0.90562 1.19339 0.87403 1.00618 0.94200 0.87137 1.29316 0.93522 0.92527 0.92160 1.81010 1.10366 1.10821 1.13233 1.19166 0.97816 0.97395 0.86272 1.21188 1.02128 1.33415 0.99644 0.92450 1.24952 0.97519 0.94939 0.96559 1.69949 1.37574 1.37976 1.07557 0.86540 0.84218 0.78746 0.78608 1.19670 1.20809 1.21012 0.92241 0.92503 0.92761 0.91973 0.94094 0.92337 0.90231 0.91904 0.91763 0.89988 0.84207 0.89020 0.94708 0.94190 0.95773 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.07 37.16 0.34 -0.75 16 2 C -0.08 -0.82 1.37 -153.69 -0.21 -1.03 16 3 C -0.12 -1.27 8.61 37.16 0.32 -0.95 16 4 C -0.13 -1.34 6.94 -25.92 -0.18 -1.52 16 5 C -0.17 -1.83 7.26 -25.92 -0.19 -2.02 16 6 C 0.08 0.87 3.71 -66.90 -0.25 0.62 16 7 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 8 N -0.67 -8.80 5.45 -105.86 -0.58 -9.38 16 9 C 0.07 1.01 4.98 -3.82 -0.02 0.99 16 10 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 11 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 12 C 0.24 4.89 12.97 -20.78 -0.27 4.62 16 13 N -0.48 -10.42 18.53 42.13 0.78 -9.64 16 14 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 15 C -0.53 -14.03 8.60 -34.44 -0.30 -14.32 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.43 7.34 -51.93 -0.38 0.05 16 26 H 0.06 0.72 7.57 -51.93 -0.39 0.33 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.86 7.83 -51.93 -0.41 0.45 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.08 0.77 7.65 -51.93 -0.40 0.38 16 33 H 0.34 4.71 7.14 -39.29 -0.28 4.43 16 34 H 0.09 1.28 8.13 -51.93 -0.42 0.85 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -28.69 314.71 -6.98 -35.67 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.45 Total: -0.67 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.20 Total: -12.22 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.94 Total: -43.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.69 -6.98 -35.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382365729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.182 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds