Wall clock time and date at job start Sun Mar 29 2020 21:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 112.90549 * 2 1 4 4 C 1.53781 * 113.61366 * 228.75181 * 2 1 3 5 5 C 1.53781 * 87.07780 * 270.88075 * 4 2 1 6 6 C 1.53774 * 87.08595 * 334.56742 * 5 4 2 7 7 H 1.08998 * 113.61967 * 140.05952 * 6 5 4 8 8 N 1.46902 * 113.61375 * 270.88839 * 6 5 4 9 9 C 1.46906 * 110.99573 * 255.49035 * 8 6 5 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.46898 * 54.99835 * 10 9 8 12 12 C 1.47200 * 109.47099 * 295.00398 * 10 9 8 13 13 N 5.90772 * 156.80982 * 140.37385 * 2 1 3 14 14 C 1.52995 * 109.47327 * 174.99789 * 10 9 8 15 15 C 1.50700 * 109.47341 * 184.99922 * 14 10 9 16 16 H 1.07996 * 119.99792 * 0.02562 * 15 14 10 17 17 C 1.37873 * 119.99738 * 180.02562 * 15 14 10 18 18 N 1.31516 * 120.00626 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46863 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47487 * 119.99893 * 19 17 15 22 22 H 1.48502 * 109.47230 * 240.00594 * 19 17 15 23 23 H 1.08996 * 109.46581 * 288.74814 * 1 2 3 24 24 H 1.09001 * 109.47363 * 48.74847 * 1 2 3 25 25 H 1.08997 * 109.46921 * 168.74955 * 1 2 3 26 26 H 1.08999 * 109.46602 * 191.25147 * 3 2 1 27 27 H 1.08998 * 109.47144 * 311.25333 * 3 2 1 28 28 H 1.09000 * 109.47089 * 71.25411 * 3 2 1 29 29 H 1.08999 * 113.61420 * 156.33721 * 4 2 1 30 30 H 1.09000 * 113.61703 * 25.43005 * 4 2 1 31 31 H 1.09004 * 113.61225 * 220.01581 * 5 4 2 32 32 H 1.09003 * 113.61395 * 89.12126 * 5 4 2 33 33 H 1.00896 * 111.00219 * 19.44675 * 8 6 5 34 34 H 1.09002 * 109.46991 * 299.99841 * 9 8 6 35 35 H 1.09000 * 109.47202 * 60.00133 * 9 8 6 36 36 H 1.09002 * 109.47542 * 305.00684 * 14 10 9 37 37 H 1.09006 * 109.46874 * 65.00184 * 14 10 9 38 38 H 0.97002 * 120.00109 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1460 -0.9290 -1.0594 5 6 2.0930 -2.0425 0.0000 6 6 2.1461 -0.9291 1.0593 7 1 1.4957 -1.1093 1.9152 8 7 3.5114 -0.5528 1.4496 9 6 3.8510 -1.0994 2.7702 10 6 5.2772 -0.6879 3.1411 11 1 5.3691 0.3967 3.0829 12 6 6.2269 -1.3117 2.2053 13 7 6.9604 -1.7918 1.4837 14 6 5.5871 -1.1502 4.5662 15 6 6.9443 -0.6394 4.9761 16 1 7.5273 -0.0442 4.2890 17 6 7.4417 -0.9320 6.2283 18 7 6.7319 -1.6573 7.0649 19 14 9.1238 -0.2983 6.7367 20 1 9.7144 0.4865 5.6228 21 1 8.9850 0.5685 7.9344 22 1 10.0095 -1.4466 7.0565 23 1 -0.3632 0.3303 0.9731 24 1 -0.3634 0.6776 -0.7726 25 1 -0.3633 -1.0079 -0.2005 26 1 3.1954 1.3517 -0.2005 27 1 1.6428 2.0078 -0.7726 28 1 1.9628 1.8726 0.9731 29 1 3.1591 -0.6498 -1.3490 30 1 1.4946 -1.1086 -1.9146 31 1 2.9718 -2.6874 -0.0001 32 1 1.1569 -2.6010 -0.0001 33 1 4.1804 -0.8465 0.7537 34 1 3.1553 -0.7111 3.5140 35 1 3.7829 -2.1869 2.7417 36 1 4.8310 -0.7599 5.2474 37 1 5.5823 -2.2396 4.6039 38 1 7.0817 -1.8628 7.9460 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382365729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:46 Heat of formation + Delta-G solvation = 6.644459 kcal Electronic energy + Delta-G solvation = -16560.642274 eV Core-core repulsion = 14016.165193 eV Total energy + Delta-G solvation = -2544.477081 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92836 -38.51063 -35.98228 -34.98837 -32.79783 -31.12772 -28.47912 -27.95698 -25.53788 -24.11000 -23.55497 -23.05002 -18.95739 -18.52559 -18.22595 -16.94493 -16.52420 -16.08930 -15.27858 -15.20097 -15.03608 -14.56491 -14.38213 -14.13186 -13.95195 -13.89970 -13.45641 -13.09464 -13.05344 -12.82844 -12.75851 -12.49814 -12.34986 -12.23675 -12.15492 -11.89515 -11.60345 -11.38713 -11.22410 -10.94758 -10.70907 -10.55958 -9.29006 -8.20027 -6.28263 1.38916 1.41870 1.52364 1.92946 1.95088 2.41189 3.08395 3.15155 3.24345 3.63122 3.79813 3.92700 4.08201 4.21378 4.42404 4.48418 4.58864 4.71688 4.75161 4.86093 4.94386 4.95854 4.98960 5.00556 5.04422 5.15424 5.25264 5.31104 5.40126 5.46964 5.59093 5.62954 5.68847 5.79128 6.11988 6.23028 6.36911 6.73935 6.86853 7.40534 8.91126 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.041795 B = 0.004781 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.774252 B = 5855.108557 C = 5998.443797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.117 4.117 4 C -0.131 4.131 5 C -0.169 4.169 6 C 0.068 3.932 7 H 0.089 0.911 8 N -0.667 5.667 9 C 0.081 3.919 10 C 0.019 3.981 11 H 0.123 0.877 12 C 0.251 3.749 13 N -0.505 5.505 14 C 0.038 3.962 15 C -0.539 4.539 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.285 1.285 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.334 0.666 34 H 0.105 0.895 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.000 1.000 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 3.646 -12.321 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.077 4.077 3 C -0.175 4.175 4 C -0.168 4.168 5 C -0.209 4.209 6 C -0.043 4.043 7 H 0.107 0.893 8 N -0.296 5.296 9 C -0.050 4.050 10 C -0.003 4.003 11 H 0.140 0.860 12 C -0.065 4.065 13 N -0.182 5.182 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.775 3.225 20 H -0.194 1.194 21 H -0.198 1.198 22 H -0.211 1.211 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.194 3.476 -12.984 18.835 hybrid contribution 1.150 -0.789 0.659 1.543 sum -12.044 2.687 -12.325 17.441 Atomic orbital electron populations 1.21563 0.91916 1.02271 1.02385 1.21948 0.95873 0.94778 0.95073 1.21453 1.00130 0.94845 1.01053 1.23001 1.00775 0.96121 0.96933 1.23581 1.02243 0.96904 0.98134 1.22835 0.90050 0.94760 0.96654 0.89332 1.60393 1.03089 1.62557 1.03604 1.21946 0.93765 0.97293 0.91950 1.19235 0.89062 1.00921 0.91059 0.85975 1.29658 0.93101 0.91874 0.91854 1.81008 1.11263 1.11747 1.14216 1.18986 0.96304 0.95673 0.89073 1.21586 1.03544 1.32978 0.99594 0.92829 1.25706 1.00815 0.95318 0.96867 1.70038 1.39153 1.39195 1.07977 0.85640 0.80220 0.78198 0.78488 1.19406 1.19752 1.21115 0.92048 0.91603 0.91994 0.93319 0.92949 0.92980 0.91255 0.90638 0.93213 0.88483 0.84751 0.87683 0.95078 0.94492 0.98175 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.07 71.98 0.65 -1.13 16 2 C -0.08 -1.38 1.37 -51.65 -0.07 -1.45 16 3 C -0.12 -2.31 8.61 71.98 0.62 -1.69 16 4 C -0.13 -2.42 6.94 31.12 0.22 -2.20 16 5 C -0.17 -3.30 7.26 31.12 0.23 -3.08 16 6 C 0.07 1.42 3.71 45.44 0.17 1.59 16 7 H 0.09 1.80 7.85 -2.39 -0.02 1.78 16 8 N -0.67 -16.79 5.45 -488.84 -2.67 -19.45 16 9 C 0.08 2.29 4.98 86.30 0.43 2.72 16 10 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 11 H 0.12 4.17 8.14 -2.39 -0.02 4.15 16 12 C 0.25 10.09 12.97 89.45 1.16 11.25 16 13 N -0.50 -21.96 18.53 20.00 0.37 -21.59 16 14 C 0.04 1.78 4.42 29.85 0.13 1.91 16 15 C -0.54 -28.71 8.60 25.60 0.22 -28.49 16 16 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 17 C 0.01 0.65 5.46 84.65 0.46 1.11 16 18 N -0.92 -53.17 13.29 21.45 0.28 -52.88 16 19 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.81 7.34 -2.39 -0.02 0.79 16 26 H 0.05 1.08 7.57 -2.39 -0.02 1.06 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.43 7.83 -2.39 -0.02 1.41 16 30 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 31 H 0.05 1.12 8.10 -2.38 -0.02 1.10 16 32 H 0.10 1.60 7.65 -2.39 -0.02 1.58 16 33 H 0.33 9.05 7.14 -89.70 -0.64 8.41 16 34 H 0.10 2.75 8.13 -2.39 -0.02 2.73 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 38 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -59.99 314.71 4.59 -55.40 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.38 Total: 11.69 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.19 Total: -18.79 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -2.01 Total: -93.93 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -59.99 4.59 -55.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382365729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.044 kcal (2) G-P(sol) polarization free energy of solvation -59.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds