Wall clock time and date at job start Sun Mar 29 2020 22:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48494 * 109.47178 * 270.00044 * 3 2 1 5 5 H 1.48497 * 109.47078 * 30.00488 * 3 2 1 6 6 H 1.48507 * 109.47236 * 150.00042 * 3 2 1 7 7 C 1.37882 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99421 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00301 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47167 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47063 * 179.97438 * 10 9 7 12 12 C 1.46905 * 111.00187 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47210 * 180.02562 * 12 11 10 14 14 H 1.08999 * 115.56452 * 330.68838 * 13 12 11 15 15 C 1.52997 * 117.50138 * 116.38245 * 13 12 11 16 16 C 1.53000 * 60.00347 * 107.48485 * 15 13 12 17 17 Cl 1.80293 * 117.50038 * 252.51181 * 16 15 13 18 18 Cl 1.80296 * 117.49611 * 107.48742 * 16 15 13 19 19 H 0.96996 * 120.00104 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47263 * 59.99665 * 9 7 2 21 21 H 1.09002 * 109.46963 * 299.99844 * 9 7 2 22 22 H 1.09003 * 109.47085 * 60.00326 * 10 9 7 23 23 H 1.08996 * 109.47337 * 300.00297 * 10 9 7 24 24 H 1.00906 * 110.99797 * 56.05240 * 11 10 9 25 25 H 1.08995 * 109.46557 * 60.00238 * 12 11 10 26 26 H 1.09003 * 109.47160 * 300.00737 * 12 11 10 27 27 H 1.09002 * 117.49910 * 359.97438 * 15 13 12 28 28 H 1.09002 * 117.49884 * 214.98139 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4905 -2.6365 -0.0022 12 6 6.0170 -4.0080 -0.0015 13 6 7.5464 -3.9671 -0.0021 14 1 7.9935 -3.0977 -0.4842 15 6 8.2692 -4.5502 1.2137 16 6 8.2886 -5.2999 -0.1199 17 17 7.2940 -6.7982 -0.2472 18 17 9.8358 -5.3121 -1.0455 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6803 0.8888 21 1 3.8745 -0.6800 -0.8912 22 1 3.6579 -3.1506 -0.8908 23 1 3.6585 -3.1502 0.8892 24 1 5.8527 -2.1101 0.7788 25 1 5.6668 -4.5319 -0.8908 26 1 5.6682 -4.5306 0.8892 27 1 7.6552 -4.9626 2.0143 28 1 9.1918 -4.0644 1.5316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388429068.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:25 Heat of formation + Delta-G solvation = -17.167551 kcal Electronic energy + Delta-G solvation = -12303.538392 eV Core-core repulsion = 9826.920208 eV Total energy + Delta-G solvation = -2476.618183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.42589 -37.43162 -37.02236 -36.21427 -34.74478 -31.92347 -27.71705 -24.93499 -23.23639 -22.44268 -21.49489 -18.95747 -17.80401 -16.58870 -16.34887 -16.24860 -15.09931 -14.95055 -14.63611 -14.27286 -13.88947 -13.59941 -13.25139 -12.97963 -12.78473 -12.37379 -12.22797 -12.02225 -11.92256 -11.77024 -11.65422 -11.40306 -11.26438 -10.75901 -10.73175 -9.37341 -8.28602 -6.33521 0.17654 1.17576 1.39949 1.40913 1.53446 2.19154 2.38400 2.94962 3.07214 3.30955 3.63407 3.96392 4.25362 4.44004 4.49154 4.63880 4.68916 4.75305 4.96524 5.02112 5.29845 5.50606 5.64341 6.07068 6.26122 6.53276 6.75548 7.31465 8.88056 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.049424 B = 0.004320 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.393149 B = 6479.845697 C = 6840.239058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.004 4.004 10 C 0.086 3.914 11 N -0.689 5.689 12 C 0.087 3.913 13 C -0.110 4.110 14 H 0.141 0.859 15 C -0.123 4.123 16 C -0.006 4.006 17 Cl -0.106 7.106 18 Cl -0.101 7.101 19 H 0.266 0.734 20 H 0.024 0.976 21 H 0.022 0.978 22 H 0.054 0.946 23 H 0.020 0.980 24 H 0.348 0.652 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.129 0.871 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.521 -9.452 2.401 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.042 4.042 10 C -0.042 4.042 11 N -0.321 5.321 12 C -0.042 4.042 13 C -0.130 4.130 14 H 0.159 0.841 15 C -0.160 4.160 16 C -0.058 4.058 17 Cl -0.079 7.079 18 Cl -0.074 7.074 19 H 0.075 0.925 20 H 0.042 0.958 21 H 0.041 0.959 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.166 0.834 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.147 0.853 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 21.467 -9.421 1.630 23.500 hybrid contribution -0.538 0.051 0.553 0.773 sum 20.929 -9.370 2.183 23.034 Atomic orbital electron populations 1.70069 1.08398 1.28234 1.52556 1.26044 0.95645 1.03717 0.93990 0.85566 0.79525 0.77823 0.79130 1.19440 1.21129 1.16545 1.21431 0.92102 0.93158 1.50681 0.95114 1.19436 0.93378 0.94386 0.97010 1.21623 0.86039 0.97520 0.99068 1.60437 1.07596 1.13600 1.50456 1.21528 0.91069 0.90228 1.01355 1.23224 0.94787 0.93886 1.01070 0.84126 1.24269 1.04344 0.97396 0.90012 1.26932 0.87932 0.87354 1.03600 1.98753 1.70620 1.40141 1.98409 1.98747 1.33452 1.98307 1.76926 0.92477 0.95797 0.95926 0.92781 0.96149 0.83362 0.91009 0.93901 0.85285 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.89 13.96 21.45 0.30 -59.59 15 2 C 0.00 0.16 5.47 84.66 0.46 0.62 15 3 Si 0.96 44.07 27.47 68.60 1.88 45.95 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 15 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 15 7 C -0.54 -30.87 9.66 25.60 0.25 -30.62 15 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 15 9 C 0.00 -0.20 4.30 29.85 0.13 -0.07 15 10 C 0.09 3.31 5.62 86.30 0.49 3.79 15 11 N -0.69 -20.21 6.50 -513.90 -3.34 -23.55 15 12 C 0.09 2.07 5.06 86.30 0.44 2.51 15 13 C -0.11 -1.99 5.79 -10.79 -0.06 -2.05 15 14 H 0.14 2.50 8.14 -2.39 -0.02 2.48 15 15 C -0.12 -1.61 9.86 30.59 0.30 -1.31 15 16 C -0.01 -0.11 3.62 30.60 0.11 0.00 15 17 Cl -0.11 -2.18 28.23 -2.72 -0.08 -2.26 15 18 Cl -0.10 -1.87 29.29 -2.72 -0.08 -1.95 15 19 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 20 H 0.02 1.05 7.20 -2.38 -0.02 1.03 15 21 H 0.02 1.03 7.57 -2.39 -0.02 1.02 15 22 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.02 0.79 8.14 -2.39 -0.02 0.77 15 24 H 0.35 9.03 8.73 -89.69 -0.78 8.25 15 25 H 0.07 1.89 8.02 -2.39 -0.02 1.87 15 26 H 0.04 0.98 7.87 -2.39 -0.02 0.96 15 27 H 0.13 1.51 8.03 -2.39 -0.02 1.50 15 28 H 0.14 1.30 8.14 -2.39 -0.02 1.28 15 Total: -1.00 -64.62 271.87 1.11 -63.51 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 0.32 Total: 5.02 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 2.11 Total: -27.12 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.04 Total: -83.14 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 17 Polarization: -4.05 SS G_CDS: -0.16 Total: -4.21 kcal Total: -64.62 1.11 -63.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388429068.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.339 kcal (2) G-P(sol) polarization free energy of solvation -64.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds