Wall clock time and date at job start Sun Mar 29 2020 22:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99931 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47249 * 179.97438 * 12 11 10 14 14 H 1.09006 * 115.55079 * 29.41971 * 13 12 11 15 15 C 1.52994 * 117.50384 * 243.75047 * 13 12 11 16 16 C 1.52997 * 117.50035 * 175.08591 * 13 12 11 17 17 Cl 1.80303 * 117.50043 * 214.98133 * 16 13 12 18 18 Cl 1.80299 * 117.49954 * 359.97438 * 16 13 12 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 23 23 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 24 24 H 1.00894 * 110.99798 * 56.04180 * 11 10 9 25 25 H 1.08998 * 109.46875 * 300.00097 * 12 11 10 26 26 H 1.09005 * 109.46991 * 60.00073 * 12 11 10 27 27 H 1.09000 * 117.49633 * 359.97438 * 15 13 12 28 28 H 1.09001 * 117.50397 * 145.02080 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0760 -0.0018 13 6 1.6351 -7.3801 -0.0018 14 1 0.6589 -7.3328 -0.4845 15 6 1.7778 -8.2964 1.2150 16 6 2.4182 -8.6893 -0.1186 17 17 1.6554 -10.0359 -1.0436 18 17 4.2131 -8.5772 -0.2465 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.8719 -3.6044 -0.8906 23 1 2.8719 -3.6044 0.8894 24 1 0.8745 -4.9841 -0.7827 25 1 3.0631 -6.0345 -0.8918 26 1 3.0632 -6.0354 0.8882 27 1 2.4419 -7.9704 2.0155 28 1 0.8956 -8.8523 1.5327 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388429091.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:27 Heat of formation + Delta-G solvation = -1.300070 kcal Electronic energy + Delta-G solvation = -12259.104525 eV Core-core repulsion = 9783.174407 eV Total energy + Delta-G solvation = -2475.930118 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.47963 -36.27146 -36.14743 -34.95534 -32.80929 -29.67496 -25.96900 -23.39765 -22.44579 -21.12914 -20.25981 -16.78145 -16.22358 -15.59025 -15.12997 -14.47934 -13.86790 -13.47044 -12.96402 -12.89448 -12.48765 -12.08961 -11.84977 -11.61597 -11.33002 -11.12495 -11.08625 -10.92748 -10.60247 -10.46540 -9.99744 -9.95229 -9.40093 -9.18076 -8.36734 -7.92348 -6.01293 -4.04062 0.98885 2.01016 3.03027 3.32772 3.37175 3.39509 3.91537 4.18144 4.43884 4.79977 5.03224 5.12142 5.34686 5.36986 5.52378 5.70575 5.98144 6.27680 6.35098 6.92880 7.37255 7.68224 7.76281 7.88875 8.04709 8.40874 9.02853 9.59777 11.10076 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.055766 B = 0.004006 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.981333 B = 6988.063515 C = 7282.431062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.688 5.688 12 C 0.083 3.917 13 C -0.102 4.102 14 H 0.131 0.869 15 C -0.135 4.135 16 C -0.005 4.005 17 Cl -0.102 7.102 18 Cl -0.096 7.096 19 H 0.261 0.739 20 H 0.026 0.974 21 H 0.014 0.986 22 H 0.017 0.983 23 H 0.060 0.940 24 H 0.338 0.662 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 -18.601 0.118 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.319 5.319 12 C -0.046 4.046 13 C -0.121 4.121 14 H 0.149 0.851 15 C -0.172 4.172 16 C -0.057 4.057 17 Cl -0.075 7.075 18 Cl -0.069 7.069 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.155 0.845 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.139 0.861 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.870 -18.580 0.716 18.992 hybrid contribution 0.883 0.746 -1.057 1.566 sum 4.753 -17.834 -0.341 18.460 Atomic orbital electron populations 1.69961 1.06033 1.26748 1.50480 1.25004 0.94855 0.99233 0.95252 0.86638 0.79564 0.83066 0.78610 1.21249 1.20206 1.20284 1.21133 0.92965 0.91001 1.51125 0.92784 1.19064 0.93985 0.90337 0.97783 1.22183 0.97061 0.88109 0.98862 1.60607 1.19597 1.01911 1.49829 1.21591 0.93822 0.87830 1.01405 1.23312 1.00061 0.89323 0.99436 0.85098 1.24043 1.02305 1.00125 0.90750 1.26988 0.82134 0.93929 1.02664 1.98742 1.80974 1.51089 1.76736 1.98746 1.11956 1.97838 1.98341 0.92903 0.95589 0.96750 0.96429 0.92192 0.84478 0.94206 0.90355 0.86087 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 15 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 15 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 15 9 C 0.03 0.66 5.23 -27.89 -0.15 0.51 15 10 C 0.07 1.35 5.62 -3.82 -0.02 1.33 15 11 N -0.69 -11.58 6.50 -113.78 -0.74 -12.32 15 12 C 0.08 1.12 5.06 -3.83 -0.02 1.10 15 13 C -0.10 -1.11 5.79 -90.63 -0.52 -1.64 15 14 H 0.13 1.38 8.13 -51.93 -0.42 0.96 15 15 C -0.13 -1.24 9.87 -26.70 -0.26 -1.50 15 16 C -0.01 -0.06 3.62 -26.69 -0.10 -0.15 15 17 Cl -0.10 -1.07 29.29 -51.86 -1.52 -2.59 15 18 Cl -0.10 -1.07 28.24 -51.86 -1.46 -2.54 15 19 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 20 H 0.03 0.72 8.14 -51.92 -0.42 0.29 15 21 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 15 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 15 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.34 5.42 8.72 -39.29 -0.34 5.08 15 25 H 0.04 0.55 8.02 -51.93 -0.42 0.14 15 26 H 0.08 1.06 7.87 -51.93 -0.41 0.65 15 27 H 0.12 1.05 8.03 -51.93 -0.42 0.63 15 28 H 0.12 0.92 8.14 -51.93 -0.42 0.50 15 LS Contribution 275.46 15.07 4.15 4.15 Total: -1.00 -29.33 275.46 -9.00 -38.33 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.66 Total: -1.70 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.48 Total: -13.86 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.00 Total: -38.35 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -2.98 Total: -5.13 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.33 -9.00 -38.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388429091.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.031 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds