Wall clock time and date at job start Sun Mar 29 2020 22:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99931 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47249 * 179.97438 * 12 11 10 14 14 H 1.09006 * 115.55079 * 29.41971 * 13 12 11 15 15 C 1.52994 * 117.50384 * 243.75047 * 13 12 11 16 16 C 1.52997 * 117.50035 * 175.08591 * 13 12 11 17 17 Cl 1.80303 * 117.50043 * 214.98133 * 16 13 12 18 18 Cl 1.80299 * 117.49954 * 359.97438 * 16 13 12 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 23 23 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 24 24 H 1.00894 * 110.99798 * 56.04180 * 11 10 9 25 25 H 1.08998 * 109.46875 * 300.00097 * 12 11 10 26 26 H 1.09005 * 109.46991 * 60.00073 * 12 11 10 27 27 H 1.09000 * 117.49633 * 359.97438 * 15 13 12 28 28 H 1.09001 * 117.50397 * 145.02080 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0760 -0.0018 13 6 1.6351 -7.3801 -0.0018 14 1 0.6589 -7.3328 -0.4845 15 6 1.7778 -8.2964 1.2150 16 6 2.4182 -8.6893 -0.1186 17 17 1.6554 -10.0359 -1.0436 18 17 4.2131 -8.5772 -0.2465 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.8719 -3.6044 -0.8906 23 1 2.8719 -3.6044 0.8894 24 1 0.8745 -4.9841 -0.7827 25 1 3.0631 -6.0345 -0.8918 26 1 3.0632 -6.0354 0.8882 27 1 2.4419 -7.9704 2.0155 28 1 0.8956 -8.8523 1.5327 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388429091.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:27 Heat of formation + Delta-G solvation = -19.196324 kcal Electronic energy + Delta-G solvation = -12259.880565 eV Core-core repulsion = 9783.174407 eV Total energy + Delta-G solvation = -2476.706158 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.39742 -37.40231 -37.02331 -36.20328 -34.77186 -31.47882 -27.54902 -25.10225 -23.24867 -22.59437 -21.56381 -18.53128 -17.54485 -16.84640 -16.45297 -16.22012 -15.18950 -14.68071 -14.53265 -14.18121 -13.75416 -13.42602 -13.07167 -12.89663 -12.71141 -12.60950 -12.43290 -12.18441 -11.98032 -11.90924 -11.43259 -11.31845 -11.25752 -10.71733 -10.54630 -9.32314 -8.19435 -6.30641 0.16308 1.17683 1.41535 1.44379 1.52327 2.19531 2.41651 3.00100 3.14140 3.35833 3.64932 3.97093 4.22333 4.51791 4.53910 4.68212 4.70911 4.71795 5.01710 5.07717 5.45363 5.68445 5.78358 6.10881 6.25216 6.50518 6.86564 7.38509 8.92385 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.055766 B = 0.004006 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.981333 B = 6988.063515 C = 7282.431062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.083 3.917 11 N -0.691 5.691 12 C 0.088 3.912 13 C -0.110 4.110 14 H 0.136 0.864 15 C -0.119 4.119 16 C -0.006 4.006 17 Cl -0.102 7.102 18 Cl -0.104 7.104 19 H 0.264 0.736 20 H -0.003 1.003 21 H -0.007 1.007 22 H 0.019 0.981 23 H 0.060 0.940 24 H 0.342 0.658 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -19.000 0.390 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.323 5.323 12 C -0.041 4.041 13 C -0.130 4.130 14 H 0.154 0.846 15 C -0.156 4.156 16 C -0.057 4.057 17 Cl -0.075 7.075 18 Cl -0.077 7.077 19 H 0.073 0.927 20 H 0.015 0.985 21 H 0.011 0.989 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.160 0.840 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.732 -19.004 0.987 19.609 hybrid contribution 0.584 0.810 -1.151 1.524 sum 5.316 -18.194 -0.164 18.955 Atomic orbital electron populations 1.70095 1.07765 1.27858 1.51350 1.25963 0.95772 1.03320 0.94662 0.85497 0.78265 0.78089 0.79169 1.20825 1.19153 1.19230 1.21599 0.93558 0.92318 1.51000 0.92161 1.18916 0.94301 0.92119 0.95243 1.21786 0.95641 0.88166 0.98940 1.60490 1.20046 1.01497 1.50222 1.21555 0.93488 0.87642 1.01386 1.23178 1.00008 0.88366 1.01436 0.84616 1.24202 1.02755 0.98567 0.90099 1.27018 0.81604 0.93515 1.03608 1.98746 1.80882 1.50930 1.76897 1.98748 1.12736 1.97857 1.98393 0.92736 0.98483 0.98904 0.96255 0.92126 0.84031 0.94420 0.90171 0.85291 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.22 15 2 C 0.00 0.05 5.46 84.66 0.46 0.52 15 3 Si 0.97 43.99 29.54 68.60 2.03 46.01 15 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 7 C -0.55 -30.96 9.11 25.60 0.23 -30.73 15 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 15 9 C 0.03 1.66 5.23 29.85 0.16 1.82 15 10 C 0.08 3.40 5.62 86.30 0.49 3.89 15 11 N -0.69 -22.82 6.50 -513.88 -3.34 -26.16 15 12 C 0.09 2.26 5.06 86.30 0.44 2.70 15 13 C -0.11 -2.22 5.79 -10.80 -0.06 -2.28 15 14 H 0.14 2.63 8.13 -2.38 -0.02 2.61 15 15 C -0.12 -1.89 9.87 30.62 0.30 -1.59 15 16 C -0.01 -0.11 3.62 30.62 0.11 0.00 15 17 Cl -0.10 -1.95 29.29 -2.72 -0.08 -2.03 15 18 Cl -0.10 -2.19 28.24 -2.72 -0.08 -2.26 15 19 H 0.26 15.06 8.31 -92.71 -0.77 14.29 15 20 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 15 21 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 15 22 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 23 H 0.06 2.45 8.14 -2.39 -0.02 2.44 15 24 H 0.34 10.85 8.72 -89.70 -0.78 10.07 15 25 H 0.04 1.00 8.02 -2.39 -0.02 0.98 15 26 H 0.08 2.03 7.87 -2.38 -0.02 2.01 15 27 H 0.13 1.90 8.03 -2.39 -0.02 1.88 15 28 H 0.14 1.71 8.14 -2.39 -0.02 1.69 15 Total: -1.00 -62.17 275.46 1.31 -60.86 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.37 Total: 5.47 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 2.12 Total: -25.68 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.06 Total: -82.38 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -4.14 SS G_CDS: -0.16 Total: -4.29 kcal Total: -62.17 1.31 -60.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388429091.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.669 kcal (2) G-P(sol) polarization free energy of solvation -62.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds