Wall clock time and date at job start Sun Mar 29 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99858 * 2 1 4 4 H 1.48504 * 109.47157 * 240.00056 * 3 2 1 5 5 H 1.48499 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47492 * 119.99984 * 3 2 1 7 7 C 1.37874 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00601 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99835 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99766 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46803 * 180.02562 * 11 10 9 13 13 C 1.34331 * 125.80755 * 94.99921 * 12 11 10 14 14 N 1.38926 * 107.12220 * 179.73806 * 13 12 11 15 15 C 1.37486 * 139.53714 * 180.21625 * 14 13 12 16 16 C 1.30909 * 116.32362 * 180.02562 * 15 14 13 17 17 S 1.75773 * 109.81852 * 359.97438 * 16 15 14 18 18 C 1.35147 * 106.52943 * 0.24591 * 14 13 12 19 19 N 1.32356 * 108.82339 * 359.97438 * 18 14 13 20 20 H 0.96994 * 119.99903 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47010 * 59.99548 * 9 7 2 22 22 H 1.09004 * 109.46921 * 299.99973 * 9 7 2 23 23 H 1.00904 * 111.00424 * 56.04341 * 10 9 7 24 24 H 1.08992 * 109.47384 * 60.00201 * 11 10 9 25 25 H 1.08996 * 109.47060 * 299.99431 * 11 10 9 26 26 H 1.08002 * 126.44106 * 0.02562 * 13 12 11 27 27 H 1.08003 * 121.83610 * 0.04928 * 15 14 13 28 28 H 1.08004 * 125.08820 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5150 -6.0259 0.0018 13 6 2.9710 -6.6725 1.0874 14 7 3.8769 -7.6278 0.6440 15 6 4.6942 -8.6097 1.1521 16 6 5.4010 -9.2849 0.2813 17 16 5.0672 -8.6970 -1.3413 18 6 3.9319 -7.5105 -0.7013 19 7 3.1118 -6.5429 -1.0794 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8407 -3.5486 0.7819 24 1 0.8803 -4.9818 -0.8885 25 1 0.8809 -4.9812 0.8914 26 1 2.6835 -6.4878 2.1119 27 1 4.7497 -8.8131 2.2113 28 1 6.0865 -10.0835 0.5236 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389330846.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:44 Heat of formation + Delta-G solvation = 101.932289 kcal Electronic energy + Delta-G solvation = -13625.214882 eV Core-core repulsion = 11190.530562 eV Total energy + Delta-G solvation = -2434.684320 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.55023 -36.92683 -34.97925 -32.43399 -30.72931 -29.73411 -26.91359 -24.33318 -24.06702 -21.42205 -20.75666 -20.13480 -18.38830 -16.41344 -16.01750 -15.91916 -15.10580 -14.60799 -14.42686 -14.10357 -13.51850 -13.25976 -12.93491 -12.01344 -11.81245 -11.44728 -11.35086 -11.16091 -10.70387 -10.65320 -10.50464 -10.01587 -9.84524 -9.19664 -8.73711 -8.43590 -7.73551 -7.23956 -5.99196 -4.00807 0.82495 0.84164 1.51892 2.18624 2.53353 3.01116 3.37061 3.40567 3.44533 4.36533 4.47221 4.60625 4.90771 5.06466 5.28618 5.36594 5.41053 5.68490 5.98847 6.07860 6.24176 6.63273 6.86551 7.27384 7.44530 7.81776 7.90265 8.16283 8.43625 8.64087 9.07894 9.63658 11.11904 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.053879 B = 0.004283 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.554055 B = 6536.490313 C = 6659.540373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.681 5.681 11 C 0.137 3.863 12 C 0.072 3.928 13 C -0.056 4.056 14 N -0.413 5.413 15 C 0.056 3.944 16 C -0.233 4.233 17 S 0.176 5.824 18 C 0.130 3.870 19 N -0.434 5.434 20 H 0.262 0.738 21 H 0.031 0.969 22 H -0.012 1.012 23 H 0.328 0.672 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.182 0.818 27 H 0.179 0.821 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.372 -20.225 3.752 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.312 5.312 11 C 0.007 3.993 12 C -0.059 4.059 13 C -0.187 4.187 14 N -0.093 5.093 15 C -0.073 4.073 16 C -0.371 4.371 17 S 0.425 5.575 18 C -0.236 4.236 19 N -0.157 5.157 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.006 0.994 23 H 0.144 0.856 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.199 0.801 27 H 0.196 0.804 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 9.599 -20.169 1.047 22.361 hybrid contribution -0.199 0.954 3.200 3.345 sum 9.400 -19.214 4.246 21.808 Atomic orbital electron populations 1.69952 1.06045 1.26872 1.50925 1.24981 0.94892 0.99325 0.95375 0.86530 0.79404 0.82629 0.78650 1.20130 1.21346 1.20318 1.21143 0.93515 0.90195 1.50334 0.92023 1.19581 0.90525 0.87099 0.95961 1.60635 1.21125 1.00389 1.49081 1.20217 0.91507 0.86448 1.01176 1.20984 0.99471 0.98259 0.87158 1.22625 0.99176 0.95746 1.01174 1.43887 1.31346 1.25968 1.08101 1.20363 0.94494 0.91147 1.01339 1.25023 1.08187 1.07874 0.95970 1.84688 1.40082 1.28971 1.03749 1.26267 1.07593 1.05364 0.84343 1.70582 1.08443 1.06791 1.29885 0.92872 0.95119 0.99436 0.85551 0.89827 0.94379 0.80079 0.80403 0.78954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.49 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 7 C -0.51 -14.96 9.32 -34.44 -0.32 -15.28 15 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 9 C 0.19 5.24 5.44 -4.98 -0.03 5.22 15 10 N -0.68 -15.59 6.48 -116.34 -0.75 -16.34 15 11 C 0.14 2.64 6.22 -4.97 -0.03 2.61 15 12 C 0.07 1.30 6.57 -83.08 -0.55 0.75 15 13 C -0.06 -0.81 11.93 -15.71 -0.19 -1.00 15 14 N -0.41 -5.58 3.19 -63.77 -0.20 -5.78 15 15 C 0.06 0.51 11.26 -16.71 -0.19 0.32 15 16 C -0.23 -1.76 11.11 29.04 0.32 -1.43 15 17 S 0.18 1.90 23.37 -107.50 -2.51 -0.61 15 18 C 0.13 2.05 8.93 -88.71 -0.79 1.26 15 19 N -0.43 -8.32 11.33 -9.77 -0.11 -8.43 15 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 21 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 22 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 15 23 H 0.33 7.13 8.71 -39.29 -0.34 6.78 15 24 H 0.08 1.67 8.14 -51.93 -0.42 1.25 15 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.18 2.03 8.06 -52.49 -0.42 1.61 15 27 H 0.18 0.95 8.06 -52.48 -0.42 0.53 15 28 H 0.19 0.67 8.06 -52.48 -0.42 0.25 15 LS Contribution 266.31 15.07 4.01 4.01 Total: -1.00 -34.27 266.31 -8.56 -42.83 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -2.85 Total: -0.27 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.87 Total: -6.03 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.33 Total: -57.05 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.51 Total: -0.61 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.27 -8.56 -42.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389330846.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.767 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds