Wall clock time and date at job start Sun Mar 29 2020 22:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99858 * 2 1 4 4 H 1.48504 * 109.47157 * 240.00056 * 3 2 1 5 5 H 1.48499 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47492 * 119.99984 * 3 2 1 7 7 C 1.37874 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00601 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99835 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47135 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99766 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46803 * 180.02562 * 11 10 9 13 13 C 1.34331 * 125.80755 * 94.99921 * 12 11 10 14 14 N 1.38926 * 107.12220 * 179.73806 * 13 12 11 15 15 C 1.37486 * 139.53714 * 180.21625 * 14 13 12 16 16 C 1.30909 * 116.32362 * 180.02562 * 15 14 13 17 17 S 1.75773 * 109.81852 * 359.97438 * 16 15 14 18 18 C 1.35147 * 106.52943 * 0.24591 * 14 13 12 19 19 N 1.32356 * 108.82339 * 359.97438 * 18 14 13 20 20 H 0.96994 * 119.99903 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47010 * 59.99548 * 9 7 2 22 22 H 1.09004 * 109.46921 * 299.99973 * 9 7 2 23 23 H 1.00904 * 111.00424 * 56.04341 * 10 9 7 24 24 H 1.08992 * 109.47384 * 60.00201 * 11 10 9 25 25 H 1.08996 * 109.47060 * 299.99431 * 11 10 9 26 26 H 1.08002 * 126.44106 * 0.02562 * 13 12 11 27 27 H 1.08003 * 121.83610 * 0.04928 * 15 14 13 28 28 H 1.08004 * 125.08820 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5150 -6.0259 0.0018 13 6 2.9710 -6.6725 1.0874 14 7 3.8769 -7.6278 0.6440 15 6 4.6942 -8.6097 1.1521 16 6 5.4010 -9.2849 0.2813 17 16 5.0672 -8.6970 -1.3413 18 6 3.9319 -7.5105 -0.7013 19 7 3.1118 -6.5429 -1.0794 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8407 -3.5486 0.7819 24 1 0.8803 -4.9818 -0.8885 25 1 0.8809 -4.9812 0.8914 26 1 2.6835 -6.4878 2.1119 27 1 4.7497 -8.8131 2.2113 28 1 6.0865 -10.0835 0.5236 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389330846.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:44 Heat of formation + Delta-G solvation = 77.533351 kcal Electronic energy + Delta-G solvation = -13626.272899 eV Core-core repulsion = 11190.530562 eV Total energy + Delta-G solvation = -2435.742337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.60569 -38.06472 -36.66897 -34.53283 -31.72394 -31.19263 -28.67915 -26.03560 -24.99584 -23.48656 -21.75282 -21.33856 -19.29366 -18.56500 -17.10165 -16.96470 -16.71184 -16.20342 -15.52819 -15.42596 -15.12208 -14.69562 -14.24523 -13.78355 -13.28552 -13.16589 -12.73882 -12.60647 -12.55496 -12.19224 -12.03346 -11.49244 -11.37346 -11.12245 -10.65743 -9.81952 -9.11725 -8.68171 -8.22124 -6.33506 -0.10629 -0.00581 0.77065 1.29541 1.40808 1.45261 1.53072 1.62943 1.75425 2.41050 3.10670 3.39078 3.56428 3.83112 4.12637 4.31905 4.43314 4.55167 4.61892 4.70973 5.07557 5.08575 5.25239 5.42095 5.60258 5.91225 6.01383 6.43531 6.67366 6.77045 6.87614 7.36900 8.89185 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.053879 B = 0.004283 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.554055 B = 6536.490313 C = 6659.540373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.687 5.687 11 C 0.144 3.856 12 C 0.034 3.966 13 C -0.037 4.037 14 N -0.411 5.411 15 C 0.031 3.969 16 C -0.200 4.200 17 S 0.183 5.817 18 C 0.103 3.897 19 N -0.493 5.493 20 H 0.266 0.734 21 H -0.001 1.001 22 H -0.028 1.028 23 H 0.335 0.665 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.215 0.785 27 H 0.221 0.779 28 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.630 -21.578 5.345 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.318 5.318 11 C 0.014 3.986 12 C -0.096 4.096 13 C -0.171 4.171 14 N -0.090 5.090 15 C -0.095 4.095 16 C -0.336 4.336 17 S 0.431 5.569 18 C -0.263 4.263 19 N -0.218 5.218 20 H 0.075 0.925 21 H 0.017 0.983 22 H -0.010 1.010 23 H 0.153 0.847 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.232 0.768 27 H 0.237 0.763 28 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 11.883 -21.570 2.655 24.769 hybrid contribution -0.827 1.181 2.682 3.045 sum 11.056 -20.389 5.337 23.800 Atomic orbital electron populations 1.70078 1.07717 1.28137 1.51277 1.25951 0.95852 1.03341 0.94486 0.85363 0.78112 0.77562 0.79101 1.19701 1.20481 1.18880 1.21482 0.93683 0.91487 1.50995 0.92111 1.19215 0.90500 0.88383 0.93605 1.60466 1.20742 1.00961 1.49646 1.20062 0.92044 0.85495 1.00982 1.20691 1.01041 0.99355 0.88546 1.22919 0.97992 0.94667 1.01486 1.44152 1.31183 1.26242 1.07458 1.21108 0.94303 0.90455 1.03659 1.25680 1.07251 1.07508 0.93181 1.84711 1.38399 1.27423 1.06374 1.26902 1.07850 1.05518 0.86022 1.70396 1.10702 1.09203 1.31500 0.92510 0.98320 1.01029 0.84736 0.91926 0.92490 0.76849 0.76260 0.74102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.18 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.97 45.48 29.54 68.60 2.03 47.50 15 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 15 7 C -0.54 -32.05 9.32 25.60 0.24 -31.81 15 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 15 9 C 0.21 11.84 5.44 85.56 0.47 12.30 15 10 N -0.69 -32.63 6.48 -521.99 -3.38 -36.01 15 11 C 0.14 5.80 6.22 85.56 0.53 6.33 15 12 C 0.03 1.25 6.57 41.36 0.27 1.52 15 13 C -0.04 -1.03 11.93 82.67 0.99 -0.05 15 14 N -0.41 -10.29 3.19 -355.67 -1.13 -11.43 15 15 C 0.03 0.44 11.26 83.86 0.94 1.38 15 16 C -0.20 -2.11 11.11 67.87 0.75 -1.35 15 17 S 0.18 3.60 23.37 -56.49 -1.32 2.28 15 18 C 0.10 3.20 8.93 179.68 1.60 4.80 15 19 N -0.49 -19.58 11.33 -184.82 -2.09 -21.67 15 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 21 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 22 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 15 23 H 0.34 14.90 8.71 -89.69 -0.78 14.12 15 24 H 0.06 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.21 4.25 8.06 -2.91 -0.02 4.23 15 27 H 0.22 1.14 8.06 -2.91 -0.02 1.11 15 28 H 0.24 0.09 8.06 -2.91 -0.02 0.07 15 Total: -1.00 -77.83 266.31 1.04 -76.79 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.40 Total: 6.00 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 6.26 Total: -6.28 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -6.32 Total: -126.29 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.32 Total: 2.28 kcal Total: -77.83 1.04 -76.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389330846.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.327 kcal (2) G-P(sol) polarization free energy of solvation -77.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds