Wall clock time and date at job start Sun Mar 29 2020 21:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40446 * 126.82120 * 2 1 4 4 C 1.30714 * 106.79160 * 180.26013 * 3 2 1 5 5 N 1.33244 * 108.94776 * 359.74775 * 4 3 2 6 6 C 1.30826 * 109.82764 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.96256 * 179.97438 * 6 5 4 8 8 N 1.46910 * 109.47012 * 90.02646 * 7 6 5 9 9 C 1.46895 * 110.99971 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47038 * 174.87619 * 9 8 7 11 11 C 1.50696 * 115.54453 * 296.30160 * 10 9 8 12 12 H 1.08001 * 120.00294 * 95.20676 * 11 10 9 13 13 C 1.37877 * 119.99957 * 274.92366 * 11 10 9 14 14 N 1.31514 * 119.99940 * 355.42608 * 13 11 10 15 15 Si 1.86797 * 119.99963 * 175.42038 * 13 11 10 16 16 H 1.48502 * 109.47311 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47232 * 120.00635 * 15 13 11 18 18 H 1.48500 * 109.47387 * 240.00519 * 15 13 11 19 19 C 1.52992 * 117.50019 * 81.97289 * 10 9 8 20 20 C 1.52997 * 117.49882 * 150.63170 * 10 9 8 21 21 H 1.09007 * 109.46951 * 270.17349 * 1 2 3 22 22 H 1.08997 * 109.47331 * 30.17342 * 1 2 3 23 23 H 1.09001 * 109.47264 * 150.17774 * 1 2 3 24 24 H 1.08002 * 125.52664 * 179.71108 * 4 3 2 25 25 H 1.08991 * 109.46912 * 330.02938 * 7 6 5 26 26 H 1.09002 * 109.47554 * 210.02166 * 7 6 5 27 27 H 1.00901 * 110.99734 * 56.04265 * 8 7 6 28 28 H 1.08996 * 109.47777 * 54.86957 * 9 8 7 29 29 H 1.09010 * 109.46633 * 294.86997 * 9 8 7 30 30 H 0.97010 * 119.99605 * 179.97438 * 14 13 11 31 31 H 1.08998 * 117.49867 * 215.00457 * 19 10 9 32 32 H 1.09002 * 117.49985 * 0.02562 * 19 10 9 33 33 H 1.09005 * 117.50012 * 359.97438 * 20 10 9 34 34 H 1.09000 * 117.49705 * 144.96683 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0057 5 7 3.5096 -0.6556 -0.0037 6 6 2.2708 -1.0761 0.0027 7 6 1.8248 -2.5155 0.0063 8 7 1.6859 -2.9817 1.3926 9 6 1.2521 -4.3845 1.4353 10 6 1.2420 -4.8712 2.8858 11 6 2.5834 -4.8972 3.5719 12 1 2.8948 -4.0615 4.1809 13 6 3.4108 -5.9906 3.4268 14 7 2.9937 -7.0476 2.7647 15 14 5.1243 -5.9704 4.1704 16 1 5.3494 -4.6745 4.8600 17 1 5.2524 -7.0801 5.1489 18 1 6.1331 -6.1406 3.0941 19 6 0.0191 -4.5265 3.7381 20 6 0.2370 -5.9633 3.2575 21 1 -0.3633 0.0031 1.0277 22 1 -0.3634 0.8884 -0.5165 23 1 -0.3634 -0.8916 -0.5111 24 1 4.4254 1.2875 -0.0117 25 1 2.5650 -3.1265 -0.5100 26 1 0.8648 -2.5998 -0.5031 27 1 1.0530 -2.3911 1.9110 28 1 1.9404 -4.9957 0.8517 29 1 0.2487 -4.4673 1.0173 30 1 3.5761 -7.8167 2.6623 31 1 0.1848 -4.3186 4.7952 32 1 -0.7785 -3.9533 3.2654 33 1 -0.4173 -6.3348 2.4687 34 1 0.5463 -6.7010 3.9980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389362915.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:12 Heat of formation + Delta-G solvation = 120.958993 kcal Electronic energy + Delta-G solvation = -16505.069825 eV Core-core repulsion = 13862.009450 eV Total energy + Delta-G solvation = -2643.060374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.94159 -37.16501 -34.89887 -33.81568 -31.81376 -31.11884 -27.72344 -26.62649 -25.30964 -23.33387 -21.87645 -21.05758 -20.29463 -19.01131 -16.92481 -16.24772 -15.98505 -15.13781 -14.75674 -14.43347 -13.96641 -13.67488 -13.57533 -13.22150 -13.12835 -12.64713 -12.28990 -11.63590 -11.41376 -11.23839 -10.85407 -10.69303 -10.40286 -10.15908 -9.82040 -9.62511 -9.54984 -9.33616 -8.91510 -8.32584 -8.06205 -7.76107 -5.92604 -3.94692 1.68456 2.36428 3.10425 3.38418 3.46747 3.52865 4.20496 4.47423 4.52454 4.75712 4.95272 5.00813 5.11082 5.25567 5.36849 5.42648 5.61297 5.79673 6.09597 6.23084 6.38312 6.42217 6.52322 6.55866 6.71074 6.79090 6.87657 7.13205 7.44813 7.49757 7.77014 7.91963 8.00987 8.27168 8.55390 9.04882 9.69346 11.16572 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.006918 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.671176 B = 4046.323603 C = 4786.311286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.384 5.384 3 N -0.332 5.332 4 C 0.197 3.803 5 N -0.526 5.526 6 C 0.295 3.705 7 C 0.136 3.864 8 N -0.657 5.657 9 C 0.109 3.891 10 C 0.048 3.952 11 C -0.468 4.468 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.284 1.284 19 C -0.218 4.218 20 C -0.150 4.150 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.215 0.785 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.331 0.669 28 H 0.078 0.922 29 H 0.000 1.000 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 10.066 -6.633 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.175 5.175 3 N -0.160 5.160 4 C -0.106 4.106 5 N -0.253 5.253 6 C 0.018 3.982 7 C 0.004 3.996 8 N -0.288 5.288 9 C -0.019 4.019 10 C 0.047 3.953 11 C -0.506 4.506 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.526 5.526 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.255 4.255 20 C -0.188 4.188 21 H 0.099 0.901 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.232 0.768 25 H 0.126 0.874 26 H 0.059 0.941 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.326 10.285 -6.639 13.350 hybrid contribution -0.156 -0.040 0.133 0.209 sum -5.482 10.245 -6.505 13.317 Atomic orbital electron populations 1.21930 0.74272 1.04564 1.03981 1.50280 1.07764 1.04197 1.55288 1.77964 1.02271 1.08292 1.27456 1.25960 0.95621 0.90745 0.98258 1.70540 1.19700 1.10923 1.24112 1.24417 0.86087 0.92381 0.95279 1.20446 1.00042 0.85458 0.93630 1.60210 1.55708 1.04535 1.08325 1.21612 0.95213 0.86046 0.99039 1.18816 0.89888 0.96831 0.89785 1.20321 0.99118 1.02227 1.28898 0.92299 1.24923 0.97939 0.95302 0.95247 1.70020 1.35824 1.04723 1.41990 0.86579 0.85055 0.77768 0.78845 1.19758 1.21469 1.21018 1.23006 1.02308 1.00038 1.00144 1.22497 1.03072 0.90870 1.02349 0.90110 0.89126 0.89169 0.76842 0.87424 0.94056 0.85213 0.90329 0.98163 0.93370 0.90526 0.92346 0.92231 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 11.33 59.85 0.68 1.55 16 2 N -0.38 -5.39 4.04 -65.10 -0.26 -5.66 16 3 N -0.33 -5.06 12.70 29.29 0.37 -4.68 16 4 C 0.20 2.95 13.03 -91.81 -1.20 1.75 16 5 N -0.53 -9.24 11.19 -11.97 -0.13 -9.38 16 6 C 0.30 4.72 7.50 -155.70 -1.17 3.55 16 7 C 0.14 2.08 6.00 -4.97 -0.03 2.05 16 8 N -0.66 -12.18 6.34 -115.05 -0.73 -12.91 16 9 C 0.11 2.25 5.51 -3.83 -0.02 2.23 16 10 C 0.05 1.12 1.64 -155.67 -0.25 0.87 16 11 C -0.47 -12.70 8.71 -34.44 -0.30 -13.00 16 12 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 13 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 14 N -0.89 -25.00 12.65 55.43 0.70 -24.29 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 C -0.22 -4.56 9.96 -26.70 -0.27 -4.82 16 20 C -0.15 -3.42 9.15 -26.70 -0.24 -3.67 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 0.66 7.10 -51.93 -0.37 0.29 16 24 H 0.22 2.31 8.06 -52.49 -0.42 1.88 16 25 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 26 H 0.04 0.51 7.12 -51.93 -0.37 0.14 16 27 H 0.33 5.74 8.78 -39.29 -0.34 5.40 16 28 H 0.08 1.81 8.13 -51.93 -0.42 1.39 16 29 H 0.00 0.01 8.10 -51.92 -0.42 -0.41 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 296.44 15.07 4.47 4.47 Total: -1.00 -31.74 296.44 -8.36 -40.10 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.85 Total: 3.29 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.90 Total: -7.72 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.05 Total: -56.92 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.74 -8.36 -40.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389362915.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.056 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds