Wall clock time and date at job start Sun Mar 29 2020 21:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40446 * 126.82120 * 2 1 4 4 C 1.30714 * 106.79160 * 180.26013 * 3 2 1 5 5 N 1.33244 * 108.94776 * 359.74775 * 4 3 2 6 6 C 1.30826 * 109.82764 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.96256 * 179.97438 * 6 5 4 8 8 N 1.46910 * 109.47012 * 90.02646 * 7 6 5 9 9 C 1.46895 * 110.99971 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47038 * 174.87619 * 9 8 7 11 11 C 1.50696 * 115.54453 * 296.30160 * 10 9 8 12 12 H 1.08001 * 120.00294 * 95.20676 * 11 10 9 13 13 C 1.37877 * 119.99957 * 274.92366 * 11 10 9 14 14 N 1.31514 * 119.99940 * 355.42608 * 13 11 10 15 15 Si 1.86797 * 119.99963 * 175.42038 * 13 11 10 16 16 H 1.48502 * 109.47311 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47232 * 120.00635 * 15 13 11 18 18 H 1.48500 * 109.47387 * 240.00519 * 15 13 11 19 19 C 1.52992 * 117.50019 * 81.97289 * 10 9 8 20 20 C 1.52997 * 117.49882 * 150.63170 * 10 9 8 21 21 H 1.09007 * 109.46951 * 270.17349 * 1 2 3 22 22 H 1.08997 * 109.47331 * 30.17342 * 1 2 3 23 23 H 1.09001 * 109.47264 * 150.17774 * 1 2 3 24 24 H 1.08002 * 125.52664 * 179.71108 * 4 3 2 25 25 H 1.08991 * 109.46912 * 330.02938 * 7 6 5 26 26 H 1.09002 * 109.47554 * 210.02166 * 7 6 5 27 27 H 1.00901 * 110.99734 * 56.04265 * 8 7 6 28 28 H 1.08996 * 109.47777 * 54.86957 * 9 8 7 29 29 H 1.09010 * 109.46633 * 294.86997 * 9 8 7 30 30 H 0.97010 * 119.99605 * 179.97438 * 14 13 11 31 31 H 1.08998 * 117.49867 * 215.00457 * 19 10 9 32 32 H 1.09002 * 117.49985 * 0.02562 * 19 10 9 33 33 H 1.09005 * 117.50012 * 359.97438 * 20 10 9 34 34 H 1.09000 * 117.49705 * 144.96683 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0057 5 7 3.5096 -0.6556 -0.0037 6 6 2.2708 -1.0761 0.0027 7 6 1.8248 -2.5155 0.0063 8 7 1.6859 -2.9817 1.3926 9 6 1.2521 -4.3845 1.4353 10 6 1.2420 -4.8712 2.8858 11 6 2.5834 -4.8972 3.5719 12 1 2.8948 -4.0615 4.1809 13 6 3.4108 -5.9906 3.4268 14 7 2.9937 -7.0476 2.7647 15 14 5.1243 -5.9704 4.1704 16 1 5.3494 -4.6745 4.8600 17 1 5.2524 -7.0801 5.1489 18 1 6.1331 -6.1406 3.0941 19 6 0.0191 -4.5265 3.7381 20 6 0.2370 -5.9633 3.2575 21 1 -0.3633 0.0031 1.0277 22 1 -0.3634 0.8884 -0.5165 23 1 -0.3634 -0.8916 -0.5111 24 1 4.4254 1.2875 -0.0117 25 1 2.5650 -3.1265 -0.5100 26 1 0.8648 -2.5998 -0.5031 27 1 1.0530 -2.3911 1.9110 28 1 1.9404 -4.9957 0.8517 29 1 0.2487 -4.4673 1.0173 30 1 3.5761 -7.8167 2.6623 31 1 0.1848 -4.3186 4.7952 32 1 -0.7785 -3.9533 3.2654 33 1 -0.4173 -6.3348 2.4687 34 1 0.5463 -6.7010 3.9980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389362915.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:12 Heat of formation + Delta-G solvation = 100.486214 kcal Electronic energy + Delta-G solvation = -16505.957591 eV Core-core repulsion = 13862.009450 eV Total energy + Delta-G solvation = -2643.948141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.06057 -38.83922 -36.31983 -34.86490 -33.86716 -32.35746 -28.87120 -27.88689 -27.19266 -24.81960 -22.96451 -22.79002 -21.48190 -20.81757 -18.22214 -17.80300 -17.09381 -16.81752 -16.35974 -15.76126 -15.39101 -15.17913 -15.05193 -14.25323 -14.17135 -14.01056 -13.53893 -13.30640 -13.08721 -12.82011 -12.60582 -12.48906 -12.33058 -11.95254 -11.25242 -11.00054 -10.86515 -10.73631 -10.56177 -10.29575 -9.87365 -9.14743 -8.02016 -6.07383 0.55188 1.40401 1.40831 1.45413 1.54852 1.93994 2.49467 3.06982 3.28561 3.41349 3.58186 3.71944 3.91129 4.15094 4.34282 4.41730 4.52703 4.58747 4.63523 4.66924 4.74983 4.84089 5.03180 5.09082 5.32558 5.36606 5.48066 5.72370 5.73524 5.81949 5.90564 6.24712 6.47614 6.63896 6.95563 7.14364 7.57992 9.06169 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.006918 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.671176 B = 4046.323603 C = 4786.311286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.377 5.377 3 N -0.345 5.345 4 C 0.190 3.810 5 N -0.567 5.567 6 C 0.284 3.716 7 C 0.143 3.857 8 N -0.676 5.676 9 C 0.126 3.874 10 C 0.018 3.982 11 C -0.478 4.478 12 H 0.040 0.960 13 C 0.025 3.975 14 N -0.910 5.910 15 Si 0.937 3.063 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.285 1.285 19 C -0.189 4.189 20 C -0.156 4.156 21 H 0.091 0.909 22 H 0.106 0.894 23 H 0.114 0.886 24 H 0.244 0.756 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.339 0.661 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.256 0.744 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.460 11.189 -7.177 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.168 5.168 3 N -0.174 5.174 4 C -0.112 4.112 5 N -0.296 5.296 6 C 0.006 3.994 7 C 0.012 3.988 8 N -0.308 5.308 9 C -0.003 4.003 10 C 0.017 3.983 11 C -0.516 4.516 12 H 0.058 0.942 13 C -0.174 4.174 14 N -0.549 5.549 15 Si 0.765 3.235 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.211 1.211 19 C -0.226 4.226 20 C -0.195 4.195 21 H 0.109 0.891 22 H 0.124 0.876 23 H 0.132 0.868 24 H 0.260 0.740 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.157 0.843 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.745 11.422 -7.178 15.083 hybrid contribution 0.230 -0.325 0.322 0.512 sum -6.515 11.098 -6.856 14.581 Atomic orbital electron populations 1.22370 0.71531 1.06605 1.05309 1.50540 1.09225 1.03238 1.53841 1.77908 1.02600 1.09118 1.27735 1.26564 0.96669 0.90274 0.97717 1.70493 1.21237 1.12432 1.25426 1.24384 0.86238 0.92871 0.95860 1.20381 1.01543 0.84849 0.92034 1.59990 1.56415 1.03716 1.10679 1.21223 0.95940 0.86682 0.96420 1.18942 0.89082 0.98448 0.91788 1.20542 1.01070 1.01331 1.28649 0.94182 1.25469 1.00552 0.95357 0.95998 1.70090 1.36594 1.05041 1.43168 0.85828 0.81988 0.77508 0.78178 1.20104 1.20907 1.21072 1.22992 1.01539 0.98562 0.99550 1.22393 1.03535 0.91147 1.02399 0.89057 0.87550 0.86802 0.74005 0.88892 0.90071 0.84279 0.93514 0.95193 0.93502 0.91328 0.88571 0.90466 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 11.33 127.77 1.45 2.68 16 2 N -0.38 -9.73 4.04 -359.87 -1.45 -11.19 16 3 N -0.34 -9.94 12.70 -61.24 -0.78 -10.72 16 4 C 0.19 5.48 13.03 180.76 2.36 7.83 16 5 N -0.57 -19.57 11.19 -191.77 -2.15 -21.71 16 6 C 0.28 8.61 7.50 138.23 1.04 9.65 16 7 C 0.14 4.11 6.00 85.55 0.51 4.62 16 8 N -0.68 -23.89 6.34 -517.91 -3.28 -27.18 16 9 C 0.13 5.00 5.51 86.31 0.48 5.47 16 10 C 0.02 0.84 1.64 -52.93 -0.09 0.75 16 11 C -0.48 -26.11 8.71 25.60 0.22 -25.89 16 12 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 13 C 0.03 1.40 5.43 84.65 0.46 1.86 16 14 N -0.91 -51.82 12.65 21.45 0.27 -51.55 16 15 Si 0.94 45.31 29.54 68.60 2.03 47.34 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 19 C -0.19 -7.48 9.96 30.61 0.30 -7.17 16 20 C -0.16 -6.99 9.15 30.62 0.28 -6.71 16 21 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.11 1.16 7.10 -2.39 -0.02 1.15 16 24 H 0.24 4.91 8.06 -2.91 -0.02 4.89 16 25 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.08 1.68 7.12 -2.39 -0.02 1.67 16 27 H 0.34 10.90 8.78 -89.69 -0.79 10.11 16 28 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 29 H 0.03 1.01 8.10 -2.38 -0.02 0.99 16 30 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 31 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 34 H 0.05 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -68.59 296.44 1.95 -66.63 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.31 Total: 15.27 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 7.01 Total: -6.90 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -7.39 Total: -122.34 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.59 1.95 -66.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389362915.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.119 kcal (2) G-P(sol) polarization free energy of solvation -68.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds