Wall clock time and date at job start Sun Mar 29 2020 21:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.81038 * 2 1 4 4 C 1.55024 * 110.87510 * 236.65201 * 2 1 3 5 5 C 1.54260 * 104.27982 * 203.89460 * 4 2 1 6 6 C 1.53878 * 106.60009 * 23.52273 * 5 4 2 7 7 C 1.54264 * 106.59479 * 359.97438 * 6 5 4 8 8 H 1.09001 * 110.48712 * 95.20765 * 7 6 5 9 9 N 1.46904 * 110.48832 * 217.71350 * 7 6 5 10 10 C 1.46899 * 111.00029 * 271.76163 * 9 7 6 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47017 * 54.99767 * 11 10 9 13 13 C 1.47205 * 109.47256 * 295.00102 * 11 10 9 14 14 N 5.87321 * 120.44844 * 73.82760 * 2 1 3 15 15 C 1.52994 * 109.47404 * 174.99689 * 11 10 9 16 16 C 1.50701 * 109.47248 * 184.99754 * 15 11 10 17 17 H 1.07997 * 120.00120 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99825 * 179.97438 * 16 15 11 19 19 N 1.31511 * 119.99974 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00091 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47323 * 89.99961 * 20 18 16 22 22 H 1.48504 * 109.46935 * 209.99740 * 20 18 16 23 23 H 1.48493 * 109.47102 * 329.99583 * 20 18 16 24 24 H 1.09006 * 109.47360 * 296.66258 * 1 2 3 25 25 H 1.08989 * 109.47604 * 56.66822 * 1 2 3 26 26 H 1.09001 * 109.46611 * 176.66752 * 1 2 3 27 27 H 1.09006 * 110.52097 * 85.15275 * 4 2 1 28 28 H 1.08996 * 110.48191 * 322.62126 * 4 2 1 29 29 H 1.09003 * 110.03883 * 264.23230 * 5 4 2 30 30 H 1.09005 * 110.03682 * 142.80214 * 5 4 2 31 31 H 1.09008 * 110.03149 * 240.71389 * 6 5 4 32 32 H 1.08999 * 110.07905 * 119.30618 * 6 5 4 33 33 H 1.00908 * 110.99583 * 35.71075 * 9 7 6 34 34 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 35 35 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 36 36 H 1.09001 * 109.47698 * 305.00111 * 15 11 10 37 37 H 1.09009 * 109.47010 * 65.00116 * 15 11 10 38 38 H 0.97003 * 120.00629 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0824 -0.7963 -1.2100 5 6 3.4951 -1.2298 -0.7672 6 6 3.4929 -1.2296 0.7715 7 6 2.0791 -0.7953 1.2101 8 1 1.4560 -1.6677 1.4071 9 7 2.1509 0.0629 2.4002 10 6 2.1279 -0.7399 3.6303 11 6 2.2047 0.1866 4.8454 12 1 1.4028 0.9231 4.7920 13 6 3.5049 0.8767 4.8550 14 7 4.5064 1.4102 4.8628 15 6 2.0553 -0.6378 6.1256 16 6 2.0078 0.2860 7.3153 17 1 2.0767 1.3543 7.1726 18 6 1.8752 -0.2327 8.5859 19 7 1.8332 0.5735 9.6241 20 14 1.7553 -2.0804 8.8327 21 1 3.1168 -2.6452 9.0128 22 1 0.9372 -2.3666 10.0386 23 1 1.1164 -2.6982 7.6431 24 1 -0.3634 0.4612 0.9184 25 1 -0.3634 0.5646 -0.8585 26 1 -0.3632 -1.0260 -0.0597 27 1 2.1380 -0.1597 -2.0931 28 1 1.4602 -1.6689 -1.4084 29 1 4.2366 -0.5230 -1.1397 30 1 3.7126 -2.2307 -1.1401 31 1 4.2333 -0.5226 1.1459 32 1 3.7096 -2.2300 1.1462 33 1 2.9673 0.6552 2.3702 34 1 1.2038 -1.3166 3.6705 35 1 2.9806 -1.4188 3.6371 36 1 1.1337 -1.2178 6.0789 37 1 2.9052 -1.3133 6.2239 38 1 1.7403 0.2087 10.5181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389704963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:05 Heat of formation + Delta-G solvation = -4.885247 kcal Electronic energy + Delta-G solvation = -16494.876224 eV Core-core repulsion = 13949.899177 eV Total energy + Delta-G solvation = -2544.977047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08655 -36.98404 -34.57464 -33.27040 -31.52278 -31.33652 -28.00997 -26.16779 -24.63139 -22.67428 -21.51852 -20.39877 -20.02979 -16.91925 -16.74321 -15.98014 -15.62805 -14.79788 -14.14679 -13.98483 -13.76329 -13.53412 -13.16855 -12.84059 -12.73602 -12.40954 -12.16534 -12.01173 -11.83097 -11.45384 -11.32315 -11.17080 -11.06495 -10.89337 -10.70754 -10.61965 -10.58730 -10.30383 -9.97535 -9.72335 -9.32476 -8.61514 -8.28990 -6.10403 -4.11018 3.26787 3.34441 3.34881 3.54000 3.58083 4.15351 4.38365 4.46592 4.53253 4.71054 4.78690 5.16691 5.23542 5.24891 5.33620 5.39741 5.45434 5.50013 5.52884 5.64288 5.72748 5.79422 5.82660 5.96169 6.01722 6.04600 6.06718 6.20710 6.27687 6.35975 6.36919 6.95633 7.08659 7.15802 7.42437 7.64059 8.34160 8.42880 8.93227 9.49434 11.02752 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.005045 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.292690 B = 5548.202275 C = 5711.935826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.157 4.157 7 C 0.087 3.913 8 H 0.085 0.915 9 N -0.683 5.683 10 C 0.065 3.935 11 C 0.016 3.984 12 H 0.116 0.884 13 C 0.239 3.761 14 N -0.469 5.469 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.340 0.660 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.018 0.982 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -5.960 -20.295 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.196 4.196 7 C -0.023 4.023 8 H 0.103 0.897 9 N -0.313 5.313 10 C -0.065 4.065 11 C -0.006 4.006 12 H 0.134 0.866 13 C -0.078 4.078 14 N -0.146 5.146 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.187 1.187 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.387 -5.013 -20.052 20.715 hybrid contribution 0.601 -1.500 0.452 1.678 sum -0.786 -6.514 -19.599 20.668 Atomic orbital electron populations 1.21684 0.94600 1.01295 1.01978 1.22068 0.95820 0.99268 0.93168 0.90422 1.22458 0.95938 0.99760 0.97859 1.22035 0.97404 1.01070 0.95370 1.22918 0.98559 1.01818 0.96330 1.22522 0.94658 0.95128 0.90041 0.89731 1.60602 1.47078 1.22405 1.01169 1.22123 1.01762 0.94739 0.87887 1.19083 0.87695 0.97217 0.96576 0.86601 1.29129 0.94561 0.92741 0.91383 1.80994 1.12841 1.10429 1.10329 1.19631 0.97683 0.95746 0.91240 1.21039 1.51299 0.94712 0.89529 0.90789 1.24991 0.94317 0.97853 0.95938 1.69904 1.49889 1.34984 0.98754 0.86815 0.78475 0.86127 0.78110 1.20330 1.21232 1.18700 0.91546 0.93295 0.93170 0.91830 0.91641 0.92059 0.92117 0.91830 0.91870 0.84156 0.89154 0.94794 0.94295 0.96337 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.29 37.16 0.35 -0.92 16 2 C -0.08 -0.81 3.17 -88.56 -0.28 -1.09 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.12 -1.02 6.28 -25.00 -0.16 -1.17 16 5 C -0.12 -1.06 6.80 -25.61 -0.17 -1.23 16 6 C -0.16 -1.60 6.48 -25.61 -0.17 -1.77 16 7 C 0.09 0.93 2.61 -66.06 -0.17 0.75 16 8 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 9 N -0.68 -8.60 6.34 -104.99 -0.67 -9.27 16 10 C 0.06 0.90 4.97 -3.83 -0.02 0.88 16 11 C 0.02 0.29 2.42 -93.41 -0.23 0.06 16 12 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 13 C 0.24 4.79 12.97 -20.80 -0.27 4.52 16 14 N -0.47 -10.26 18.53 42.11 0.78 -9.48 16 15 C 0.00 -0.09 3.49 -27.89 -0.10 -0.18 16 16 C -0.53 -14.28 9.15 -34.44 -0.32 -14.60 16 17 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.02 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.71 7.55 -51.92 -0.39 0.32 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.34 4.55 7.18 -39.29 -0.28 4.26 16 34 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 37 H 0.02 0.40 7.57 -51.92 -0.39 0.00 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -29.93 311.03 -7.21 -37.14 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.48 Total: 0.14 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.63 Total: -12.84 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.89 Total: -45.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.93 -7.21 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389704963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.253 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds