Wall clock time and date at job start Sun Mar 29 2020 21:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.81038 * 2 1 4 4 C 1.55024 * 110.87510 * 236.65201 * 2 1 3 5 5 C 1.54260 * 104.27982 * 203.89460 * 4 2 1 6 6 C 1.53878 * 106.60009 * 23.52273 * 5 4 2 7 7 C 1.54264 * 106.59479 * 359.97438 * 6 5 4 8 8 H 1.09001 * 110.48712 * 95.20765 * 7 6 5 9 9 N 1.46904 * 110.48832 * 217.71350 * 7 6 5 10 10 C 1.46899 * 111.00029 * 271.76163 * 9 7 6 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47017 * 54.99767 * 11 10 9 13 13 C 1.47205 * 109.47256 * 295.00102 * 11 10 9 14 14 N 5.87321 * 120.44844 * 73.82760 * 2 1 3 15 15 C 1.52994 * 109.47404 * 174.99689 * 11 10 9 16 16 C 1.50701 * 109.47248 * 184.99754 * 15 11 10 17 17 H 1.07997 * 120.00120 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99825 * 179.97438 * 16 15 11 19 19 N 1.31511 * 119.99974 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00091 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47323 * 89.99961 * 20 18 16 22 22 H 1.48504 * 109.46935 * 209.99740 * 20 18 16 23 23 H 1.48493 * 109.47102 * 329.99583 * 20 18 16 24 24 H 1.09006 * 109.47360 * 296.66258 * 1 2 3 25 25 H 1.08989 * 109.47604 * 56.66822 * 1 2 3 26 26 H 1.09001 * 109.46611 * 176.66752 * 1 2 3 27 27 H 1.09006 * 110.52097 * 85.15275 * 4 2 1 28 28 H 1.08996 * 110.48191 * 322.62126 * 4 2 1 29 29 H 1.09003 * 110.03883 * 264.23230 * 5 4 2 30 30 H 1.09005 * 110.03682 * 142.80214 * 5 4 2 31 31 H 1.09008 * 110.03149 * 240.71389 * 6 5 4 32 32 H 1.08999 * 110.07905 * 119.30618 * 6 5 4 33 33 H 1.00908 * 110.99583 * 35.71075 * 9 7 6 34 34 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 35 35 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 36 36 H 1.09001 * 109.47698 * 305.00111 * 15 11 10 37 37 H 1.09009 * 109.47010 * 65.00116 * 15 11 10 38 38 H 0.97003 * 120.00629 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0824 -0.7963 -1.2100 5 6 3.4951 -1.2298 -0.7672 6 6 3.4929 -1.2296 0.7715 7 6 2.0791 -0.7953 1.2101 8 1 1.4560 -1.6677 1.4071 9 7 2.1509 0.0629 2.4002 10 6 2.1279 -0.7399 3.6303 11 6 2.2047 0.1866 4.8454 12 1 1.4028 0.9231 4.7920 13 6 3.5049 0.8767 4.8550 14 7 4.5064 1.4102 4.8628 15 6 2.0553 -0.6378 6.1256 16 6 2.0078 0.2860 7.3153 17 1 2.0767 1.3543 7.1726 18 6 1.8752 -0.2327 8.5859 19 7 1.8332 0.5735 9.6241 20 14 1.7553 -2.0804 8.8327 21 1 3.1168 -2.6452 9.0128 22 1 0.9372 -2.3666 10.0386 23 1 1.1164 -2.6982 7.6431 24 1 -0.3634 0.4612 0.9184 25 1 -0.3634 0.5646 -0.8585 26 1 -0.3632 -1.0260 -0.0597 27 1 2.1380 -0.1597 -2.0931 28 1 1.4602 -1.6689 -1.4084 29 1 4.2366 -0.5230 -1.1397 30 1 3.7126 -2.2307 -1.1401 31 1 4.2333 -0.5226 1.1459 32 1 3.7096 -2.2300 1.1462 33 1 2.9673 0.6552 2.3702 34 1 1.2038 -1.3166 3.6705 35 1 2.9806 -1.4188 3.6371 36 1 1.1337 -1.2178 6.0789 37 1 2.9052 -1.3133 6.2239 38 1 1.7403 0.2087 10.5181 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389704963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:05 Heat of formation + Delta-G solvation = -23.417269 kcal Electronic energy + Delta-G solvation = -16495.679833 eV Core-core repulsion = 13949.899177 eV Total energy + Delta-G solvation = -2545.780656 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96102 -38.40498 -36.01206 -34.99617 -33.17221 -32.06016 -29.38065 -27.32060 -25.56322 -23.84391 -23.32636 -21.16860 -20.81853 -18.92138 -18.25999 -16.91081 -16.72739 -16.19361 -15.46149 -15.10129 -14.85635 -14.73767 -14.46098 -14.34891 -13.97128 -13.79066 -13.55799 -13.23674 -13.04535 -12.74511 -12.55071 -12.50908 -12.08460 -11.95707 -11.82492 -11.71501 -11.63632 -11.42974 -11.38482 -11.28110 -11.11264 -10.73776 -9.25871 -8.24701 -6.30484 1.43329 1.44376 1.55751 1.93259 1.94487 2.41053 3.11222 3.17516 3.22915 3.73077 3.76911 4.02032 4.15398 4.39138 4.44224 4.50812 4.59672 4.63843 4.67466 4.77935 4.80487 4.89375 4.93902 5.03227 5.09627 5.16021 5.25268 5.26433 5.32845 5.35806 5.46841 5.52330 5.62607 5.64497 6.16711 6.27189 6.37642 6.73431 6.79808 7.34002 8.92336 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.005045 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.292690 B = 5548.202275 C = 5711.935826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.065 0.935 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.157 4.157 7 C 0.086 3.914 8 H 0.093 0.907 9 N -0.686 5.686 10 C 0.076 3.924 11 C 0.023 3.977 12 H 0.119 0.881 13 C 0.249 3.751 14 N -0.507 5.507 15 C -0.002 4.002 16 C -0.532 4.532 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.955 5.955 20 Si 0.948 3.052 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.222 1.222 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.333 0.667 34 H 0.113 0.887 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -8.585 -22.339 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.196 4.196 7 C -0.024 4.024 8 H 0.111 0.889 9 N -0.316 5.316 10 C -0.054 4.054 11 C 0.001 3.999 12 H 0.136 0.864 13 C -0.067 4.067 14 N -0.184 5.184 15 C -0.041 4.041 16 C -0.570 4.570 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.595 5.595 20 Si 0.771 3.229 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.145 1.145 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.278 -7.641 -22.141 23.533 hybrid contribution 0.890 -0.557 1.073 1.501 sum -1.389 -8.198 -21.067 22.649 Atomic orbital electron populations 1.21651 0.94122 1.01850 1.01610 1.22055 0.96171 0.98691 0.93404 0.91678 1.22434 0.95574 1.00020 0.97412 1.22035 0.97755 1.01726 0.94216 1.22895 0.97827 1.01420 0.97455 1.22609 0.95121 0.95200 0.89420 0.88884 1.60614 1.46765 1.22682 1.01517 1.22020 1.03102 0.93736 0.86519 1.19134 0.86317 0.97406 0.97038 0.86370 1.29697 0.94763 0.92026 0.90246 1.80990 1.14226 1.11620 1.11610 1.19583 0.99004 0.95216 0.90288 1.21414 1.50007 0.93700 0.91882 0.95396 1.26047 0.94091 1.03692 0.95535 1.70089 1.52245 1.37758 0.99449 0.85694 0.78638 0.79202 0.79359 1.20268 1.21503 1.14473 0.92947 0.92527 0.92257 0.91070 0.90623 0.92192 0.91059 0.93350 0.91638 0.84907 0.86919 0.94331 0.91638 0.95733 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.29 71.98 0.67 -1.50 16 2 C -0.08 -1.44 3.17 -9.46 -0.03 -1.47 16 3 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.12 -1.62 6.28 31.71 0.20 -1.43 16 5 C -0.12 -1.81 6.80 31.32 0.21 -1.60 16 6 C -0.16 -2.89 6.48 31.32 0.20 -2.69 16 7 C 0.09 1.63 2.61 45.98 0.12 1.75 16 8 H 0.09 1.64 7.75 -2.39 -0.02 1.62 16 9 N -0.69 -16.03 6.34 -486.07 -3.08 -19.12 16 10 C 0.08 1.90 4.97 86.30 0.43 2.33 16 11 C 0.02 0.78 2.42 -12.60 -0.03 0.75 16 12 H 0.12 3.99 8.14 -2.38 -0.02 3.97 16 13 C 0.25 9.95 12.97 89.46 1.16 11.11 16 14 N -0.51 -22.45 18.53 19.99 0.37 -22.08 16 15 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 16 C -0.53 -28.97 9.15 25.60 0.23 -28.74 16 17 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 18 C 0.00 0.17 5.47 84.66 0.46 0.63 16 19 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 20 Si 0.95 41.58 27.47 68.60 1.88 43.46 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.22 -8.27 6.54 99.48 0.65 -7.62 16 24 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.08 0.93 8.02 -2.39 -0.02 0.91 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.05 1.04 7.55 -2.38 -0.02 1.02 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.33 8.61 7.18 -89.69 -0.64 7.97 16 34 H 0.11 2.36 8.08 -2.39 -0.02 2.34 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 2.37 7.20 -2.39 -0.02 2.35 16 37 H 0.02 0.98 7.57 -2.38 -0.02 0.96 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -66.14 311.03 3.53 -62.61 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.32 Total: 15.15 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.73 Total: -20.83 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -2.41 Total: -100.40 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.88 Total: 43.46 kcal Total: -66.14 3.53 -62.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389704963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.196 kcal (2) G-P(sol) polarization free energy of solvation -66.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds