Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.05265 * 2 1 4 4 C 1.54257 * 110.03239 * 238.57325 * 2 1 3 5 5 C 1.54890 * 104.19520 * 217.10642 * 4 2 1 6 6 C 1.54886 * 102.75126 * 37.94242 * 5 4 2 7 7 C 1.53879 * 110.02899 * 121.40519 * 2 1 3 8 8 H 1.09002 * 110.03435 * 238.57019 * 7 2 1 9 9 N 1.46900 * 110.07534 * 359.97438 * 7 2 1 10 10 C 1.46900 * 111.00006 * 204.28099 * 9 7 2 11 11 C 1.52999 * 109.46760 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47370 * 54.99956 * 11 10 9 13 13 C 1.47203 * 109.47484 * 294.99868 * 11 10 9 14 14 N 5.39824 * 53.05607 * 91.61904 * 2 1 3 15 15 C 1.52999 * 109.46987 * 174.99877 * 11 10 9 16 16 C 1.50696 * 109.47364 * 184.99665 * 15 11 10 17 17 H 1.07999 * 120.00137 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00225 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00029 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47279 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47421 * 120.00679 * 20 18 16 23 23 H 1.48505 * 109.46979 * 240.00293 * 20 18 16 24 24 H 1.09003 * 109.47083 * 298.59209 * 1 2 3 25 25 H 1.08998 * 109.47017 * 58.59178 * 1 2 3 26 26 H 1.09000 * 109.47375 * 178.59190 * 1 2 3 27 27 H 1.09002 * 110.48576 * 98.43374 * 4 2 1 28 28 H 1.08997 * 110.49000 * 335.78650 * 4 2 1 29 29 H 1.09003 * 110.75715 * 279.63207 * 5 4 2 30 30 H 1.08996 * 110.91807 * 156.33576 * 5 4 2 31 31 H 1.08994 * 110.49258 * 203.37966 * 6 5 4 32 32 H 1.09005 * 110.59664 * 80.78672 * 6 5 4 33 33 H 1.00899 * 110.99752 * 80.32251 * 9 7 2 34 34 H 1.08993 * 109.46980 * 299.99480 * 10 9 7 35 35 H 1.08992 * 109.47101 * 60.00252 * 10 9 7 36 36 H 1.08999 * 109.47568 * 305.00275 * 15 11 10 37 37 H 1.09003 * 109.46881 * 64.99981 * 15 11 10 38 38 H 0.96999 * 120.00268 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0584 -0.7556 -1.2367 5 6 3.3137 -1.5008 -0.7188 6 6 2.8875 -1.9405 0.7039 7 6 2.0571 -0.7533 1.2339 8 1 2.6867 -0.0951 1.8326 9 7 0.9335 -1.2459 2.0419 10 6 1.3363 -1.4395 3.4413 11 6 0.1423 -1.9512 4.2495 12 1 -0.2530 -2.8532 3.7823 13 6 -0.9053 -0.9177 4.2853 14 7 -1.7145 -0.1219 4.3127 15 6 0.5919 -2.2712 5.6765 16 6 -0.5526 -2.8896 6.4371 17 1 -1.5053 -3.0399 5.9512 18 6 -0.3832 -3.2647 7.7531 19 7 0.7771 -3.0822 8.3447 20 14 -1.8017 -4.0319 8.6956 21 1 -2.9899 -4.1281 7.8102 22 1 -1.4147 -5.3905 9.1533 23 1 -2.1281 -3.1874 9.8728 24 1 -0.3633 0.4918 0.9024 25 1 -0.3633 0.5355 -0.8771 26 1 -0.3634 -1.0273 -0.0253 27 1 2.3298 -0.0539 -2.0253 28 1 1.3143 -1.4662 -1.5964 29 1 4.1710 -0.8291 -0.6748 30 1 3.5357 -2.3679 -1.3408 31 1 3.7636 -2.1035 1.3314 32 1 2.2777 -2.8430 0.6598 33 1 0.5545 -2.0966 1.6537 34 1 2.1463 -2.1672 3.4888 35 1 1.6756 -0.4905 3.8563 36 1 1.4278 -2.9701 5.6461 37 1 0.9043 -1.3528 6.1736 38 1 0.8962 -3.3457 9.2706 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389704967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = -2.885694 kcal Electronic energy + Delta-G solvation = -16573.327615 eV Core-core repulsion = 14028.437276 eV Total energy + Delta-G solvation = -2544.890340 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.15416 -36.72314 -34.40304 -33.23053 -31.34512 -31.06483 -27.65630 -25.75025 -24.72088 -22.71239 -21.73644 -20.92340 -19.10828 -17.05687 -16.42896 -15.98413 -15.29958 -14.61870 -14.26687 -13.98154 -13.72772 -13.42811 -13.03361 -12.77094 -12.36242 -12.10171 -11.97157 -11.89853 -11.42439 -11.30439 -11.12176 -11.05734 -10.85633 -10.73382 -10.66674 -10.60218 -10.43743 -10.40648 -10.21077 -9.51790 -9.19595 -8.45898 -8.16701 -6.09445 -4.12432 3.28579 3.36889 3.41648 3.77580 3.86968 4.26654 4.42569 4.51970 4.59284 4.86242 4.95828 5.26763 5.28878 5.35244 5.39948 5.48782 5.54960 5.62494 5.68353 5.75660 5.77332 5.87809 5.93849 6.01849 6.08689 6.15596 6.25353 6.37882 6.42948 6.52607 6.61545 7.22621 7.43319 7.53074 7.57329 7.86218 8.23858 8.61622 8.92776 9.53159 11.01539 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040685 B = 0.004922 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.055969 B = 5687.033011 C = 6102.758755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.153 4.153 7 C 0.087 3.913 8 H 0.078 0.922 9 N -0.683 5.683 10 C 0.065 3.935 11 C 0.009 3.991 12 H 0.098 0.902 13 C 0.256 3.744 14 N -0.480 5.480 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.341 0.659 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 1.533 -16.962 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.159 4.159 5 C -0.161 4.161 6 C -0.193 4.193 7 C -0.024 4.024 8 H 0.097 0.903 9 N -0.313 5.313 10 C -0.065 4.065 11 C -0.013 4.013 12 H 0.115 0.885 13 C -0.061 4.061 14 N -0.157 5.157 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.763 3.342 -16.624 17.613 hybrid contribution 0.189 -1.597 0.644 1.732 sum 4.953 1.745 -15.980 16.821 Atomic orbital electron populations 1.21529 0.94012 1.01605 1.00908 1.21767 0.96962 0.98591 0.93382 0.91420 1.22479 0.97177 0.98933 0.97360 1.22409 0.97756 0.99726 0.96165 1.23133 1.00549 0.98811 0.96779 1.22220 0.90655 0.95413 0.94078 0.90337 1.60731 1.31659 1.36714 1.02199 1.22093 0.95956 1.01074 0.87347 1.19209 0.88839 0.92030 1.01195 0.88455 1.28828 0.93344 0.93308 0.90593 1.80948 1.11506 1.11925 1.11312 1.19167 0.97401 0.97818 0.86359 1.21191 0.97714 1.40726 0.96712 0.92455 1.24954 0.95695 0.95695 0.97639 1.69947 1.23086 1.47569 1.12478 0.86541 0.82644 0.78924 0.80010 1.19664 1.20877 1.20960 0.91515 0.94491 0.92917 0.92114 0.91618 0.91697 0.91915 0.91652 0.91372 0.84012 0.93405 0.90670 0.94507 0.95600 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.06 37.16 0.30 -1.11 16 2 C -0.09 -0.91 3.50 -89.50 -0.31 -1.22 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -1.08 6.36 -25.08 -0.16 -1.23 16 5 C -0.12 -1.04 6.91 -24.74 -0.17 -1.21 16 6 C -0.15 -1.47 6.43 -25.07 -0.16 -1.63 16 7 C 0.09 0.95 3.21 -66.59 -0.21 0.74 16 8 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 9 N -0.68 -8.66 4.16 -105.55 -0.44 -9.10 16 10 C 0.07 0.95 4.87 -3.82 -0.02 0.93 16 11 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 12 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 13 C 0.26 5.36 13.67 -20.78 -0.28 5.08 16 14 N -0.48 -10.95 18.53 42.13 0.78 -10.17 16 15 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 16 C -0.53 -14.03 8.60 -34.44 -0.30 -14.32 16 17 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.07 0.93 7.81 -51.93 -0.41 0.52 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.60 7.47 -51.93 -0.39 0.21 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.58 7.84 -51.93 -0.41 0.18 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.66 7.57 -51.93 -0.39 0.26 16 33 H 0.34 4.01 7.65 -39.29 -0.30 3.71 16 34 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 35 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -29.34 312.18 -7.47 -36.81 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.48 Total: -1.89 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.76 Total: -11.82 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 1.08 Total: -44.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.34 -7.47 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389704967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.925 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds