Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.05265 * 2 1 4 4 C 1.54257 * 110.03239 * 238.57325 * 2 1 3 5 5 C 1.54890 * 104.19520 * 217.10642 * 4 2 1 6 6 C 1.54886 * 102.75126 * 37.94242 * 5 4 2 7 7 C 1.53879 * 110.02899 * 121.40519 * 2 1 3 8 8 H 1.09002 * 110.03435 * 238.57019 * 7 2 1 9 9 N 1.46900 * 110.07534 * 359.97438 * 7 2 1 10 10 C 1.46900 * 111.00006 * 204.28099 * 9 7 2 11 11 C 1.52999 * 109.46760 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47370 * 54.99956 * 11 10 9 13 13 C 1.47203 * 109.47484 * 294.99868 * 11 10 9 14 14 N 5.39824 * 53.05607 * 91.61904 * 2 1 3 15 15 C 1.52999 * 109.46987 * 174.99877 * 11 10 9 16 16 C 1.50696 * 109.47364 * 184.99665 * 15 11 10 17 17 H 1.07999 * 120.00137 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00225 * 179.97438 * 16 15 11 19 19 N 1.31513 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00029 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47279 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47421 * 120.00679 * 20 18 16 23 23 H 1.48505 * 109.46979 * 240.00293 * 20 18 16 24 24 H 1.09003 * 109.47083 * 298.59209 * 1 2 3 25 25 H 1.08998 * 109.47017 * 58.59178 * 1 2 3 26 26 H 1.09000 * 109.47375 * 178.59190 * 1 2 3 27 27 H 1.09002 * 110.48576 * 98.43374 * 4 2 1 28 28 H 1.08997 * 110.49000 * 335.78650 * 4 2 1 29 29 H 1.09003 * 110.75715 * 279.63207 * 5 4 2 30 30 H 1.08996 * 110.91807 * 156.33576 * 5 4 2 31 31 H 1.08994 * 110.49258 * 203.37966 * 6 5 4 32 32 H 1.09005 * 110.59664 * 80.78672 * 6 5 4 33 33 H 1.00899 * 110.99752 * 80.32251 * 9 7 2 34 34 H 1.08993 * 109.46980 * 299.99480 * 10 9 7 35 35 H 1.08992 * 109.47101 * 60.00252 * 10 9 7 36 36 H 1.08999 * 109.47568 * 305.00275 * 15 11 10 37 37 H 1.09003 * 109.46881 * 64.99981 * 15 11 10 38 38 H 0.96999 * 120.00268 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0584 -0.7556 -1.2367 5 6 3.3137 -1.5008 -0.7188 6 6 2.8875 -1.9405 0.7039 7 6 2.0571 -0.7533 1.2339 8 1 2.6867 -0.0951 1.8326 9 7 0.9335 -1.2459 2.0419 10 6 1.3363 -1.4395 3.4413 11 6 0.1423 -1.9512 4.2495 12 1 -0.2530 -2.8532 3.7823 13 6 -0.9053 -0.9177 4.2853 14 7 -1.7145 -0.1219 4.3127 15 6 0.5919 -2.2712 5.6765 16 6 -0.5526 -2.8896 6.4371 17 1 -1.5053 -3.0399 5.9512 18 6 -0.3832 -3.2647 7.7531 19 7 0.7771 -3.0822 8.3447 20 14 -1.8017 -4.0319 8.6956 21 1 -2.9899 -4.1281 7.8102 22 1 -1.4147 -5.3905 9.1533 23 1 -2.1281 -3.1874 9.8728 24 1 -0.3633 0.4918 0.9024 25 1 -0.3633 0.5355 -0.8771 26 1 -0.3634 -1.0273 -0.0253 27 1 2.3298 -0.0539 -2.0253 28 1 1.3143 -1.4662 -1.5964 29 1 4.1710 -0.8291 -0.6748 30 1 3.5357 -2.3679 -1.3408 31 1 3.7636 -2.1035 1.3314 32 1 2.2777 -2.8430 0.6598 33 1 0.5545 -2.0966 1.6537 34 1 2.1463 -2.1672 3.4888 35 1 1.6756 -0.4905 3.8563 36 1 1.4278 -2.9701 5.6461 37 1 0.9043 -1.3528 6.1736 38 1 0.8962 -3.3457 9.2706 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389704967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = -18.852642 kcal Electronic energy + Delta-G solvation = -16574.019994 eV Core-core repulsion = 14028.437276 eV Total energy + Delta-G solvation = -2545.582718 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05662 -38.24620 -35.91134 -34.99246 -32.85703 -31.96667 -29.00873 -27.10505 -25.64922 -24.16820 -23.46407 -21.64367 -20.00289 -18.64622 -18.24669 -17.02011 -16.62282 -16.11464 -15.39411 -15.34398 -14.85486 -14.43642 -14.25825 -14.17035 -13.97337 -13.72209 -13.22596 -13.07273 -12.95834 -12.92367 -12.55935 -12.49005 -12.32744 -11.88493 -11.83837 -11.62888 -11.51556 -11.42037 -11.32959 -11.25556 -11.02197 -10.55882 -9.16752 -8.19728 -6.27929 1.38965 1.42165 1.52598 2.09561 2.16312 2.41563 3.15729 3.24323 3.39243 3.74481 3.81974 4.10025 4.24823 4.38327 4.49081 4.58467 4.62719 4.72654 4.78024 4.80989 4.84036 4.89268 5.00596 5.07284 5.11650 5.19214 5.30588 5.35826 5.46938 5.48484 5.54698 5.62343 5.67154 5.79559 6.14362 6.26063 6.60216 6.83847 6.95221 7.40904 8.91474 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.040685 B = 0.004922 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.055969 B = 5687.033011 C = 6102.758755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.150 4.150 7 C 0.085 3.915 8 H 0.071 0.929 9 N -0.688 5.688 10 C 0.079 3.921 11 C 0.020 3.980 12 H 0.119 0.881 13 C 0.266 3.734 14 N -0.515 5.515 15 C 0.037 3.963 16 C -0.538 4.538 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.949 3.051 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.286 1.286 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.348 0.652 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.035 0.965 37 H -0.001 1.001 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.438 0.687 -18.363 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.189 4.189 7 C -0.025 4.025 8 H 0.089 0.911 9 N -0.319 5.319 10 C -0.051 4.051 11 C -0.001 4.001 12 H 0.136 0.864 13 C -0.050 4.050 14 N -0.193 5.193 15 C -0.001 4.001 16 C -0.576 4.576 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.775 3.225 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.212 1.212 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.168 0.832 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.027 2.492 -18.044 18.896 hybrid contribution 0.110 -1.304 1.063 1.686 sum 5.137 1.188 -16.980 17.780 Atomic orbital electron populations 1.21452 0.94881 1.01328 0.99842 1.21764 0.96106 0.98809 0.93981 0.91513 1.22436 0.97295 0.98980 0.96696 1.22400 0.97647 1.00168 0.95412 1.23084 1.00260 0.98089 0.97487 1.22260 0.90216 0.96025 0.93958 0.91054 1.60666 1.32687 1.37240 1.01345 1.21861 0.94410 1.00807 0.88024 1.19174 0.89490 0.92344 0.99131 0.86370 1.29334 0.93032 0.93015 0.89611 1.80945 1.12816 1.13198 1.12308 1.18989 0.96346 0.96125 0.88669 1.21592 0.98484 1.40323 0.97222 0.92777 1.25713 0.97863 0.96405 0.98771 1.70038 1.24745 1.48772 1.12876 0.85638 0.79923 0.78440 0.78540 1.19355 1.19757 1.21173 0.94346 0.93631 0.92864 0.91109 0.91435 0.91248 0.90824 0.91602 0.91121 0.83190 0.91794 0.91667 0.94674 0.98281 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.06 71.98 0.58 -1.99 16 2 C -0.09 -1.67 3.50 -10.07 -0.04 -1.71 16 3 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.12 -1.76 6.36 31.67 0.20 -1.56 16 5 C -0.12 -1.68 6.91 31.88 0.22 -1.46 16 6 C -0.15 -2.52 6.43 31.67 0.20 -2.32 16 7 C 0.09 1.74 3.21 45.64 0.15 1.89 16 8 H 0.07 1.57 7.82 -2.39 -0.02 1.55 16 9 N -0.69 -16.52 4.16 -487.84 -2.03 -18.54 16 10 C 0.08 2.22 4.87 86.30 0.42 2.64 16 11 C 0.02 0.73 2.35 -12.60 -0.03 0.70 16 12 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 13 C 0.27 11.07 13.67 89.45 1.22 12.29 16 14 N -0.52 -23.53 18.53 20.00 0.37 -23.16 16 15 C 0.04 1.74 4.42 29.85 0.13 1.87 16 16 C -0.54 -28.61 8.60 25.60 0.22 -28.39 16 17 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 18 C 0.01 0.62 5.46 84.66 0.46 1.08 16 19 N -0.92 -53.27 13.29 21.45 0.28 -52.98 16 20 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H 0.04 1.05 7.81 -2.39 -0.02 1.03 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 1.14 7.47 -2.39 -0.02 1.12 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.01 7.84 -2.39 -0.02 1.00 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.17 7.57 -2.38 -0.02 1.15 16 33 H 0.35 7.51 7.65 -89.69 -0.69 6.82 16 34 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 35 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 36 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -61.92 312.18 4.73 -57.19 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.34 Total: 8.85 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 3.74 Total: -16.95 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -1.37 Total: -94.69 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -61.92 4.73 -57.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389704967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.338 kcal (2) G-P(sol) polarization free energy of solvation -61.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds