Wall clock time and date at job start Sun Mar 29 2020 21:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 109.46980 * 2 1 4 4 C 1.46901 * 111.00316 * 288.17246 * 3 2 1 5 5 C 1.50694 * 109.47008 * 160.35985 * 4 3 2 6 6 H 1.08003 * 120.00330 * 4.89492 * 5 4 3 7 7 C 1.37878 * 120.00079 * 184.89592 * 5 4 3 8 8 N 1.31515 * 120.00462 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99680 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47707 * 90.00067 * 9 7 5 11 11 H 1.48506 * 109.46940 * 209.99933 * 9 7 5 12 12 H 1.48502 * 109.47303 * 329.99447 * 9 7 5 13 13 C 1.46896 * 110.99893 * 164.21570 * 3 2 1 14 14 C 1.50697 * 109.47637 * 293.95827 * 13 3 2 15 15 C 1.40071 * 120.23892 * 89.99352 * 14 13 3 16 16 N 1.31389 * 120.24748 * 180.02562 * 15 14 13 17 17 C 1.34332 * 120.77860 * 0.02562 * 16 15 14 18 18 N 1.31437 * 119.77170 * 179.97438 * 17 16 15 19 19 N 1.37501 * 120.46094 * 0.27606 * 17 16 15 20 20 H 0.97003 * 120.13228 * 179.72508 * 19 17 16 21 21 C 1.35721 * 120.23785 * 270.02555 * 14 13 3 22 22 H 1.09002 * 109.46673 * 299.60181 * 1 2 3 23 23 H 1.08998 * 109.47412 * 59.60660 * 1 2 3 24 24 H 1.09005 * 109.46711 * 179.61205 * 1 2 3 25 25 H 1.09003 * 109.47105 * 240.00919 * 2 1 3 26 26 H 1.08992 * 109.47607 * 120.00287 * 2 1 3 27 27 H 1.08994 * 109.46669 * 280.36107 * 4 3 2 28 28 H 1.09002 * 109.46524 * 40.36102 * 4 3 2 29 29 H 0.96993 * 120.00311 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47551 * 173.95678 * 13 3 2 31 31 H 1.08999 * 109.47332 * 53.95863 * 13 3 2 32 32 H 1.08000 * 119.87082 * 0.02562 * 15 14 13 33 33 H 0.97004 * 119.99463 * 0.02562 * 18 17 16 34 34 H 1.08000 * 120.36772 * 359.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7919 2.0240 -1.3030 5 6 1.8437 3.5216 -1.1439 6 1 2.1053 3.9547 -0.1897 7 6 1.5570 4.3392 -2.2165 8 7 1.6017 5.6462 -2.0776 9 14 1.1038 3.5903 -3.8667 10 1 -0.3673 3.4000 -3.9368 11 1 1.5380 4.4985 -4.9585 12 1 1.7806 2.2770 -4.0169 13 6 3.4394 1.4415 0.3730 14 6 3.6000 1.0044 1.8063 15 6 3.8165 -0.3453 2.1121 16 7 3.9562 -0.7266 3.3616 17 6 3.8937 0.1657 4.3638 18 7 4.0355 -0.2376 5.6066 19 7 3.6762 1.4973 4.0988 20 1 3.6280 2.1371 4.8264 21 6 3.5353 1.9155 2.8100 22 1 -0.3633 0.5077 0.8936 23 1 -0.3634 0.5199 -0.8864 24 1 -0.3633 -1.0277 -0.0070 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.5641 1.7061 -2.0034 28 1 0.8132 1.7327 -1.6843 29 1 1.4004 6.2213 -2.8323 30 1 3.8041 2.4626 0.2616 31 1 4.0121 0.7784 -0.2754 32 1 3.8689 -1.0751 1.3177 33 1 4.1851 -1.1768 5.7976 34 1 3.3688 2.9596 2.5898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389748774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:43 Heat of formation + Delta-G solvation = 72.665633 kcal Electronic energy + Delta-G solvation = -16565.084645 eV Core-core repulsion = 13919.930113 eV Total energy + Delta-G solvation = -2645.154532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83737 -37.38326 -34.47837 -34.21272 -32.60044 -31.08278 -29.75606 -27.28108 -25.01220 -24.35986 -22.45888 -22.29263 -19.88388 -18.11868 -17.63377 -16.90690 -16.76099 -15.37189 -14.95033 -14.63858 -14.39614 -13.92713 -13.71387 -13.45845 -12.78021 -12.46647 -12.11424 -11.73523 -11.40837 -11.37350 -11.12223 -10.90250 -10.56021 -10.43641 -10.25266 -9.95108 -9.81700 -9.51813 -9.37441 -8.62385 -7.59961 -7.42780 -6.12117 -4.09133 0.81108 1.83079 2.76854 3.23464 3.31851 3.32914 3.79397 4.36168 4.38675 4.68987 4.75913 4.92300 5.17730 5.21632 5.47924 5.59300 5.71014 5.81322 5.91243 5.97751 6.12191 6.22662 6.30601 6.39590 6.53353 6.64042 6.77116 6.85399 7.11635 7.55976 7.81981 7.90489 7.93601 8.47969 8.58100 8.95070 9.50311 11.00935 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.036555 B = 0.006149 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.778300 B = 4552.494678 C = 4993.883017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.524 5.524 4 C 0.160 3.840 5 C -0.507 4.507 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.120 3.880 14 C -0.255 4.255 15 C 0.253 3.747 16 N -0.567 5.567 17 C 0.536 3.464 18 N -0.785 5.785 19 N -0.612 5.612 20 H 0.423 0.577 21 C 0.212 3.788 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.024 0.976 26 H 0.061 0.939 27 H -0.010 1.010 28 H 0.028 0.972 29 H 0.264 0.736 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.161 0.839 33 H 0.350 0.650 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 -9.025 5.152 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.249 5.249 4 C 0.034 3.966 5 C -0.545 4.545 6 H 0.097 0.903 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.009 4.009 14 C -0.266 4.266 15 C 0.064 3.936 16 N -0.289 5.289 17 C 0.167 3.833 18 N -0.425 5.425 19 N -0.230 5.230 20 H 0.261 0.739 21 C 0.074 3.926 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.007 0.993 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.178 0.822 33 H 0.168 0.832 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.998 -8.988 6.836 11.684 hybrid contribution -0.014 -0.467 -2.127 2.178 sum 2.984 -9.456 4.710 10.977 Atomic orbital electron populations 1.21749 0.95486 1.00131 1.02839 1.22103 0.96135 0.90866 0.99164 1.62067 1.15443 1.14289 1.33082 1.20230 0.95539 0.95912 0.84899 1.20991 1.46698 0.88166 0.98672 0.90251 1.24887 0.95147 0.94698 0.98540 1.69876 1.49660 1.02837 1.31542 0.86906 0.79249 0.79469 0.84379 1.20194 1.21244 1.19291 1.20630 0.89934 1.02223 0.88104 1.20117 1.15023 0.93695 0.97799 1.23446 0.82086 0.94227 0.93824 1.69943 1.24401 1.33972 1.00593 1.20170 0.91168 0.80984 0.91018 1.69919 1.34159 1.25154 1.13278 1.42399 1.63260 1.08976 1.08394 0.73931 1.22413 0.87428 1.01105 0.81656 0.92259 0.92307 0.93474 0.95778 0.92097 0.99252 0.95406 0.92645 0.88516 0.94657 0.82212 0.83248 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.98 37.16 0.37 -1.81 16 2 C 0.05 0.70 5.52 -3.82 -0.02 0.68 16 3 N -0.52 -9.45 4.37 -237.52 -1.04 -10.49 16 4 C 0.16 3.49 3.65 -4.98 -0.02 3.47 16 5 C -0.51 -13.12 9.17 -34.44 -0.32 -13.44 16 6 H 0.08 2.20 7.90 -52.48 -0.41 1.78 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -26.10 13.96 55.43 0.77 -25.33 16 9 Si 0.87 20.36 27.37 -169.99 -4.65 15.71 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.01 6.69 56.52 0.38 -5.63 16 13 C 0.12 1.83 4.95 -4.98 -0.02 1.81 16 14 C -0.25 -3.35 4.90 -104.84 -0.51 -3.86 16 15 C 0.25 3.27 9.12 -17.05 -0.16 3.11 16 16 N -0.57 -8.41 10.47 -13.79 -0.14 -8.55 16 17 C 0.54 8.02 8.69 -323.05 -2.81 5.22 16 18 N -0.78 -12.34 14.19 29.72 0.42 -11.92 16 19 N -0.61 -7.41 5.42 -13.78 -0.07 -7.49 16 20 H 0.42 4.19 8.93 -40.82 -0.36 3.82 16 21 C 0.21 2.53 10.94 -16.50 -0.18 2.35 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.97 6.52 -51.93 -0.34 0.63 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 26 H 0.06 0.84 5.15 -51.93 -0.27 0.58 16 27 H -0.01 -0.23 7.40 -51.93 -0.38 -0.61 16 28 H 0.03 0.62 5.39 -51.93 -0.28 0.34 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.10 1.61 7.26 -51.93 -0.38 1.23 16 31 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.16 1.68 7.75 -52.49 -0.41 1.27 16 33 H 0.35 5.30 8.90 -40.82 -0.36 4.94 16 34 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 283.05 15.07 4.27 4.27 Total: -1.00 -30.75 283.05 -8.67 -39.42 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.46 Total: 5.07 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.76 Total: -0.69 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.06 Total: -63.77 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.65 Total: 15.71 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.75 -8.67 -39.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389748774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.089 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds